Wall clock time and date at job start Mon Mar 30 2020 02:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46900 * 109.47273 * 2 1 4 4 C 1.46901 * 110.99907 * 174.91229 * 3 2 1 5 5 C 1.50707 * 108.81271 * 304.98163 * 4 3 2 6 6 H 1.08000 * 119.99841 * 123.84203 * 5 4 3 7 7 C 1.37876 * 119.99841 * 303.56125 * 5 4 3 8 8 N 1.31515 * 120.00454 * 355.41735 * 7 5 4 9 9 Si 1.86802 * 119.99490 * 175.41721 * 7 5 4 10 10 H 1.48503 * 109.46962 * 60.00351 * 9 7 5 11 11 H 1.48501 * 109.46801 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47458 * 300.00160 * 9 7 5 13 13 C 1.51407 * 108.75796 * 186.55717 * 4 3 2 14 14 C 1.51277 * 112.84273 * 286.10695 * 13 4 3 15 15 C 1.51423 * 112.84239 * 296.97684 * 14 13 4 16 16 C 1.52138 * 112.26667 * 46.49300 * 15 14 13 17 17 H 1.08999 * 114.95591 * 130.37120 * 16 15 14 18 18 C 1.53684 * 116.28930 * 272.28925 * 16 15 14 19 19 C 1.51440 * 108.84099 * 63.45874 * 4 3 2 20 20 H 1.09003 * 114.52745 * 318.28049 * 19 4 3 21 21 H 1.08996 * 109.47222 * 60.00089 * 1 2 3 22 22 H 1.08997 * 109.47317 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47297 * 299.99649 * 1 2 3 24 24 H 1.08996 * 109.46960 * 239.99711 * 2 1 3 25 25 H 1.09004 * 109.46638 * 120.00097 * 2 1 3 26 26 H 1.00899 * 110.99762 * 298.86650 * 3 2 1 27 27 H 0.96995 * 120.00044 * 179.97438 * 8 7 5 28 28 H 1.08996 * 108.80825 * 46.96849 * 13 4 3 29 29 H 1.08996 * 108.81199 * 165.23563 * 13 4 3 30 30 H 1.09003 * 108.80950 * 176.11616 * 14 13 4 31 31 H 1.08992 * 108.72440 * 57.78877 * 14 13 4 32 32 H 1.08996 * 108.92199 * 285.77896 * 15 14 13 33 33 H 1.08997 * 108.92264 * 167.20617 * 15 14 13 34 34 H 1.09005 * 117.53854 * 4.36524 * 18 16 15 35 35 H 1.08995 * 117.60486 * 219.07648 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4831 1.4259 0.1216 5 6 3.8902 0.6568 1.3521 6 1 4.5897 -0.1620 1.2702 7 6 3.3741 1.0023 2.5831 8 7 2.5979 2.0577 2.6981 9 14 3.7776 -0.0289 4.0875 10 1 5.2468 -0.0357 4.3035 11 1 3.1053 0.5494 5.2787 12 1 3.3018 -1.4197 3.8765 13 6 3.9184 2.8674 0.2797 14 6 3.8255 3.6537 -1.0093 15 6 4.7435 3.1219 -2.0897 16 6 4.6626 1.6084 -2.2214 17 1 4.5188 1.2423 -3.2379 18 6 5.6000 0.7952 -1.3148 19 6 4.0937 0.7617 -1.0947 20 1 3.5892 -0.1505 -1.4133 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5139 0.8900 26 1 1.7115 1.8774 -0.8249 27 1 2.2346 2.3004 3.5640 28 1 3.2870 3.3450 1.0289 29 1 4.9505 2.8865 0.6294 30 1 4.0860 4.6926 -0.8068 31 1 2.7978 3.6137 -1.3702 32 1 5.7695 3.4016 -1.8509 33 1 4.4680 3.5747 -3.0421 34 1 6.2030 1.3442 -0.5914 35 1 6.0673 -0.0934 -1.7389 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126615.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:05 Heat of formation + Delta-G solvation = 4.378108 kcal Electronic energy + Delta-G solvation = -14942.635154 eV Core-core repulsion = 12747.249467 eV Total energy + Delta-G solvation = -2195.385687 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.67550 -36.54071 -34.30601 -33.62824 -31.60905 -28.47053 -27.09940 -24.13696 -23.42831 -22.30366 -21.74199 -18.74907 -17.83066 -17.10768 -16.46552 -16.07188 -15.16374 -15.10572 -14.75014 -14.05668 -14.03552 -13.71031 -13.41873 -12.87747 -12.81224 -12.48907 -12.41093 -12.09778 -11.94624 -11.86070 -11.67470 -11.34631 -11.18457 -10.79181 -10.44938 -10.39439 -10.06390 -8.45866 -7.79807 -5.97768 1.42149 1.44713 1.49402 2.50978 3.08696 3.35550 3.95357 3.99311 4.20098 4.32142 4.40493 4.46925 4.54951 4.71662 4.75645 4.77764 4.95745 4.97058 5.09648 5.10566 5.15934 5.21252 5.33393 5.46191 5.48828 5.55016 5.57695 5.70954 5.85230 5.90809 6.21468 6.53424 6.83183 7.11723 7.48936 7.69051 9.15735 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027440 B = 0.014088 C = 0.012005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.164385 B = 1986.986331 C = 2331.769643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.072 3.928 3 N -0.655 5.655 4 C 0.273 3.727 5 C -0.529 4.529 6 H 0.034 0.966 7 C 0.049 3.951 8 N -0.863 5.863 9 Si 0.920 3.080 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.280 1.280 13 C -0.085 4.085 14 C -0.113 4.113 15 C -0.079 4.079 16 C -0.146 4.146 17 H 0.107 0.893 18 C -0.174 4.174 19 C -0.160 4.160 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.040 0.960 24 H 0.007 0.993 25 H 0.047 0.953 26 H 0.306 0.694 27 H 0.249 0.751 28 H 0.066 0.934 29 H 0.014 0.986 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.610 -0.037 -8.290 8.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.058 4.058 3 N -0.284 5.284 4 C 0.184 3.816 5 C -0.568 4.568 6 H 0.053 0.947 7 C -0.154 4.154 8 N -0.498 5.498 9 Si 0.748 3.252 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.205 1.205 13 C -0.123 4.123 14 C -0.151 4.151 15 C -0.117 4.117 16 C -0.164 4.164 17 H 0.125 0.875 18 C -0.212 4.212 19 C -0.180 4.180 20 H 0.091 0.909 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.122 0.878 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.373 0.182 -7.459 7.471 hybrid contribution 0.560 -1.063 0.418 1.272 sum 0.933 -0.881 -7.041 7.157 Atomic orbital electron populations 1.21655 0.95351 1.00945 1.01129 1.21586 0.94522 0.91339 0.98309 1.60799 1.12557 1.13127 1.41915 1.17262 0.83645 0.91643 0.89061 1.21037 1.26821 1.16436 0.92530 0.94747 1.25343 0.94887 0.95396 0.99804 1.70126 1.32071 1.24614 1.23026 0.86247 0.77972 0.79885 0.81091 1.20565 1.21404 1.20536 1.20663 0.98434 0.96758 0.96463 1.20888 0.99438 0.98813 0.95941 1.20565 0.99508 0.92571 0.99015 1.22178 1.04769 0.94284 0.95197 0.87490 1.22842 0.93117 1.02360 1.02899 1.22529 0.96332 1.00166 0.98953 0.90866 0.92553 0.91951 0.94126 0.97477 0.93437 0.87811 0.94128 0.91580 0.96719 0.92594 0.93031 0.92427 0.90193 0.90521 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 10.22 71.98 0.74 -4.00 16 2 C 0.07 3.08 5.74 86.30 0.50 3.58 16 3 N -0.66 -29.85 5.16 -479.07 -2.47 -32.32 16 4 C 0.27 12.78 0.28 1.75 0.00 12.78 16 5 C -0.53 -28.35 6.15 25.60 0.16 -28.20 16 6 H 0.03 1.90 7.73 -2.91 -0.02 1.88 16 7 C 0.05 2.69 4.95 84.65 0.42 3.11 16 8 N -0.86 -48.34 10.79 21.45 0.23 -48.10 16 9 Si 0.92 43.81 29.54 68.60 2.03 45.83 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 11 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 C -0.08 -3.92 4.02 29.51 0.12 -3.80 16 14 C -0.11 -4.12 5.67 29.52 0.17 -3.95 16 15 C -0.08 -2.47 5.84 29.79 0.17 -2.30 16 16 C -0.15 -4.87 6.19 -11.18 -0.07 -4.94 16 17 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 18 C -0.17 -6.41 9.64 30.58 0.29 -6.11 16 19 C -0.16 -6.50 4.37 -11.88 -0.05 -6.55 16 20 H 0.07 3.03 6.21 -2.39 -0.01 3.02 16 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 24 H 0.01 0.30 6.36 -2.39 -0.02 0.28 16 25 H 0.05 2.35 6.52 -2.38 -0.02 2.33 16 26 H 0.31 12.84 7.74 -89.69 -0.69 12.15 16 27 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 28 H 0.07 3.50 6.32 -2.39 -0.02 3.49 16 29 H 0.01 0.70 7.76 -2.39 -0.02 0.68 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.85 7.19 -2.39 -0.02 1.83 16 32 H 0.06 1.76 8.07 -2.39 -0.02 1.74 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 3.05 7.87 -2.38 -0.02 3.04 16 35 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -56.99 266.96 2.59 -54.40 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.36 Total: 20.57 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 2.44 Total: -40.38 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.24 Total: -80.42 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -56.99 2.59 -54.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126615.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.780 kcal (2) G-P(sol) polarization free energy of solvation -56.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds