Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47471 * 2 1 4 4 C 1.46902 * 111.00376 * 185.22165 * 3 2 1 5 5 C 1.50705 * 108.80901 * 66.47842 * 4 3 2 6 6 H 1.08002 * 119.99635 * 265.24792 * 5 4 3 7 7 C 1.37877 * 119.99989 * 85.25931 * 5 4 3 8 8 N 1.31515 * 120.00013 * 161.27769 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 341.27302 * 7 5 4 10 10 H 1.48494 * 109.47223 * 95.86904 * 9 7 5 11 11 H 1.48502 * 109.46979 * 215.86670 * 9 7 5 12 12 H 1.48495 * 109.47208 * 335.86721 * 9 7 5 13 13 C 1.51411 * 108.76049 * 308.05098 * 4 3 2 14 14 C 1.51271 * 112.84608 * 192.35687 * 13 4 3 15 15 C 1.51421 * 112.83977 * 63.02281 * 14 13 4 16 16 C 1.52127 * 112.27096 * 313.50423 * 15 14 13 17 17 H 1.08993 * 115.60836 * 228.34719 * 16 15 14 18 18 C 1.51152 * 115.71761 * 88.12212 * 16 15 14 19 19 C 1.51445 * 108.84200 * 184.95296 * 4 3 2 20 20 H 1.09003 * 114.52344 * 284.50710 * 19 4 3 21 21 H 1.08995 * 109.47006 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47035 * 300.00299 * 1 2 3 23 23 H 1.09009 * 109.46662 * 59.99366 * 1 2 3 24 24 H 1.09004 * 109.47359 * 240.00166 * 2 1 3 25 25 H 1.09002 * 109.47381 * 120.00189 * 2 1 3 26 26 H 1.00903 * 111.00264 * 309.18389 * 3 2 1 27 27 H 0.97002 * 120.00143 * 179.97438 * 8 7 5 28 28 H 1.09000 * 108.80245 * 313.23079 * 13 4 3 29 29 H 1.09000 * 108.80765 * 71.59706 * 13 4 3 30 30 H 1.09003 * 108.80490 * 183.87912 * 14 13 4 31 31 H 1.08988 * 108.81136 * 302.15305 * 14 13 4 32 32 H 1.09001 * 108.92342 * 74.22689 * 15 14 13 33 33 H 1.09003 * 108.91615 * 192.88376 * 15 14 13 34 34 H 1.08995 * 117.06723 * 140.08970 * 18 16 15 35 35 H 1.09001 * 117.67649 * 355.36973 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4829 1.4260 -0.1248 5 6 3.8690 0.9105 -1.4873 6 1 4.1356 -0.1282 -1.6159 7 6 3.8821 1.7648 -2.5694 8 7 4.5513 1.4415 -3.6544 9 14 2.9490 3.3814 -2.4944 10 1 3.8769 4.4704 -2.0967 11 1 2.3745 3.6837 -3.8300 12 1 1.8541 3.2751 -1.4970 13 6 4.0871 0.5225 0.9293 14 6 5.5791 0.7174 1.0847 15 6 5.9440 2.1087 1.5580 16 6 5.2040 3.1922 0.7880 17 1 5.8208 4.0096 0.4147 18 6 3.8531 3.5838 1.3414 19 6 3.9445 2.8627 0.0034 20 1 3.7627 3.4768 -0.8786 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5140 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.5792 1.9243 -0.7302 27 1 4.5602 2.0424 -4.4158 28 1 3.6045 0.7262 1.8851 29 1 3.8966 -0.5148 0.6541 30 1 5.9551 -0.0087 1.8055 31 1 6.0593 0.5361 0.1233 32 1 5.6993 2.1975 2.6165 33 1 7.0164 2.2557 1.4299 34 1 3.5992 4.6436 1.3263 35 1 3.4719 3.0199 2.1928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261126618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = 37.251284 kcal Electronic energy + Delta-G solvation = -15038.216299 eV Core-core repulsion = 12844.256100 eV Total energy + Delta-G solvation = -2193.960199 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39361 -35.33351 -32.51412 -32.39922 -30.42060 -26.96681 -25.57598 -22.71783 -22.24340 -20.90722 -19.74889 -18.15031 -16.26991 -15.64140 -15.01375 -14.28281 -13.84080 -13.60953 -13.24417 -12.74209 -12.53046 -12.48227 -12.23353 -11.47629 -11.17070 -10.96699 -10.70397 -10.60534 -10.38013 -10.28869 -9.95754 -9.84295 -9.64816 -9.01522 -8.92843 -8.64390 -8.54148 -7.02799 -6.19255 -4.12808 3.17218 3.29689 3.36401 4.29788 4.56405 5.08185 5.32767 5.42672 5.63311 5.69021 5.83541 5.92099 6.00296 6.03382 6.04194 6.17189 6.25923 6.36422 6.45408 6.53878 6.55552 6.61077 6.61795 6.72099 6.89704 6.96859 6.98277 7.16731 7.19483 7.33915 7.69383 8.23994 8.53089 8.62635 8.89857 9.48694 10.93296 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.019262 C = 0.014225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.593819 B = 1453.292759 C = 1967.873096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 N -0.696 5.696 4 C 0.238 3.762 5 C -0.538 4.538 6 H 0.072 0.928 7 C 0.078 3.922 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.286 1.286 11 H -0.305 1.305 12 H -0.251 1.251 13 C -0.083 4.083 14 C -0.110 4.110 15 C -0.076 4.076 16 C -0.143 4.143 17 H 0.088 0.912 18 C -0.184 4.184 19 C -0.112 4.112 20 H 0.080 0.920 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.331 0.669 27 H 0.263 0.737 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.173 1.155 8.318 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 N -0.331 5.331 4 C 0.149 3.851 5 C -0.577 4.577 6 H 0.090 0.910 7 C -0.126 4.126 8 N -0.519 5.519 9 Si 0.720 3.280 10 H -0.215 1.215 11 H -0.235 1.235 12 H -0.177 1.177 13 C -0.121 4.121 14 C -0.148 4.148 15 C -0.113 4.113 16 C -0.162 4.162 17 H 0.106 0.894 18 C -0.221 4.221 19 C -0.130 4.130 20 H 0.097 0.903 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.152 0.848 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.121 1.223 8.823 9.157 hybrid contribution -0.232 0.845 -1.208 1.492 sum -2.353 2.069 7.615 8.235 Atomic orbital electron populations 1.21807 0.97235 1.00328 1.01254 1.21693 0.92972 0.92248 1.00342 1.61432 1.08057 1.10774 1.52885 1.17585 0.84664 0.88594 0.94253 1.21476 1.47414 0.97720 0.91119 0.90975 1.25089 0.94237 0.97604 0.95701 1.70021 1.38200 1.37903 1.05726 0.87160 0.80918 0.84368 0.75513 1.21537 1.23472 1.17652 1.20672 0.94387 0.99333 0.97690 1.20737 0.97456 0.95178 1.01424 1.20487 0.98691 0.94312 0.97844 1.21527 0.90474 1.00465 1.03747 0.89392 1.22609 1.00943 0.99420 0.99169 1.21926 0.99795 0.98135 0.93123 0.90264 0.93344 0.92945 0.93516 0.94150 0.92551 0.84783 0.92698 0.94092 0.92857 0.93674 0.91063 0.92973 0.92669 0.90688 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.12 37.16 0.38 -2.05 16 2 C 0.06 1.12 5.46 -3.82 -0.02 1.10 16 3 N -0.70 -15.15 6.07 -102.77 -0.62 -15.77 16 4 C 0.24 5.45 0.41 -134.34 -0.05 5.39 16 5 C -0.54 -14.52 6.92 -34.44 -0.24 -14.76 16 6 H 0.07 2.14 7.96 -52.49 -0.42 1.72 16 7 C 0.08 2.18 5.27 -17.82 -0.09 2.08 16 8 N -0.88 -26.39 13.96 55.43 0.77 -25.62 16 9 Si 0.89 21.75 23.56 -169.99 -4.00 17.74 16 10 H -0.29 -7.02 6.67 56.52 0.38 -6.64 16 11 H -0.31 -7.62 7.11 56.52 0.40 -7.21 16 12 H -0.25 -5.76 4.83 56.52 0.27 -5.48 16 13 C -0.08 -1.70 3.18 -28.41 -0.09 -1.79 16 14 C -0.11 -2.09 5.67 -28.40 -0.16 -2.25 16 15 C -0.08 -1.34 5.82 -27.97 -0.16 -1.50 16 16 C -0.14 -2.83 6.12 -92.51 -0.57 -3.40 16 17 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 18 C -0.18 -3.52 9.55 -28.04 -0.27 -3.78 16 19 C -0.11 -2.52 3.70 -92.29 -0.34 -2.86 16 20 H 0.08 1.93 1.54 -51.93 -0.08 1.85 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 24 H 0.04 0.88 7.11 -51.93 -0.37 0.51 16 25 H 0.06 1.05 6.73 -51.93 -0.35 0.70 16 26 H 0.33 7.54 5.01 -39.29 -0.20 7.34 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.04 0.80 7.84 -51.93 -0.41 0.39 16 29 H 0.05 1.11 6.86 -51.93 -0.36 0.75 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.54 7.75 -51.94 -0.40 1.13 16 32 H 0.05 0.82 8.04 -51.93 -0.42 0.41 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.09 1.72 7.81 -51.93 -0.41 1.31 16 LS Contribution 256.37 15.07 3.86 3.86 Total: -1.00 -28.54 256.37 -7.26 -35.81 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.65 Total: 7.80 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -1.62 Total: -23.82 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.15 Total: -41.39 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.00 Total: 17.74 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.54 -7.26 -35.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.057 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds