Wall clock time and date at job start Mon Mar 30 2020 02:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47471 * 2 1 4 4 C 1.46902 * 111.00376 * 185.22165 * 3 2 1 5 5 C 1.50705 * 108.80901 * 66.47842 * 4 3 2 6 6 H 1.08002 * 119.99635 * 265.24792 * 5 4 3 7 7 C 1.37877 * 119.99989 * 85.25931 * 5 4 3 8 8 N 1.31515 * 120.00013 * 161.27769 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 341.27302 * 7 5 4 10 10 H 1.48494 * 109.47223 * 95.86904 * 9 7 5 11 11 H 1.48502 * 109.46979 * 215.86670 * 9 7 5 12 12 H 1.48495 * 109.47208 * 335.86721 * 9 7 5 13 13 C 1.51411 * 108.76049 * 308.05098 * 4 3 2 14 14 C 1.51271 * 112.84608 * 192.35687 * 13 4 3 15 15 C 1.51421 * 112.83977 * 63.02281 * 14 13 4 16 16 C 1.52127 * 112.27096 * 313.50423 * 15 14 13 17 17 H 1.08993 * 115.60836 * 228.34719 * 16 15 14 18 18 C 1.51152 * 115.71761 * 88.12212 * 16 15 14 19 19 C 1.51445 * 108.84200 * 184.95296 * 4 3 2 20 20 H 1.09003 * 114.52344 * 284.50710 * 19 4 3 21 21 H 1.08995 * 109.47006 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47035 * 300.00299 * 1 2 3 23 23 H 1.09009 * 109.46662 * 59.99366 * 1 2 3 24 24 H 1.09004 * 109.47359 * 240.00166 * 2 1 3 25 25 H 1.09002 * 109.47381 * 120.00189 * 2 1 3 26 26 H 1.00903 * 111.00264 * 309.18389 * 3 2 1 27 27 H 0.97002 * 120.00143 * 179.97438 * 8 7 5 28 28 H 1.09000 * 108.80245 * 313.23079 * 13 4 3 29 29 H 1.09000 * 108.80765 * 71.59706 * 13 4 3 30 30 H 1.09003 * 108.80490 * 183.87912 * 14 13 4 31 31 H 1.08988 * 108.81136 * 302.15305 * 14 13 4 32 32 H 1.09001 * 108.92342 * 74.22689 * 15 14 13 33 33 H 1.09003 * 108.91615 * 192.88376 * 15 14 13 34 34 H 1.08995 * 117.06723 * 140.08970 * 18 16 15 35 35 H 1.09001 * 117.67649 * 355.36973 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4829 1.4260 -0.1248 5 6 3.8690 0.9105 -1.4873 6 1 4.1356 -0.1282 -1.6159 7 6 3.8821 1.7648 -2.5694 8 7 4.5513 1.4415 -3.6544 9 14 2.9490 3.3814 -2.4944 10 1 3.8769 4.4704 -2.0967 11 1 2.3745 3.6837 -3.8300 12 1 1.8541 3.2751 -1.4970 13 6 4.0871 0.5225 0.9293 14 6 5.5791 0.7174 1.0847 15 6 5.9440 2.1087 1.5580 16 6 5.2040 3.1922 0.7880 17 1 5.8208 4.0096 0.4147 18 6 3.8531 3.5838 1.3414 19 6 3.9445 2.8627 0.0034 20 1 3.7627 3.4768 -0.8786 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5140 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.5792 1.9243 -0.7302 27 1 4.5602 2.0424 -4.4158 28 1 3.6045 0.7262 1.8851 29 1 3.8966 -0.5148 0.6541 30 1 5.9551 -0.0087 1.8055 31 1 6.0593 0.5361 0.1233 32 1 5.6993 2.1975 2.6165 33 1 7.0164 2.2557 1.4299 34 1 3.5992 4.6436 1.3263 35 1 3.4719 3.0199 2.1928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:08 Heat of formation + Delta-G solvation = 18.248389 kcal Electronic energy + Delta-G solvation = -15039.040327 eV Core-core repulsion = 12844.256100 eV Total energy + Delta-G solvation = -2194.784227 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03454 -36.97269 -34.53784 -33.97653 -32.07039 -28.52043 -27.48727 -24.41233 -23.89030 -22.45899 -21.32774 -20.01958 -18.05188 -17.43246 -16.75335 -15.91051 -15.58386 -15.27316 -14.95117 -14.47372 -14.20309 -14.06283 -13.80881 -12.95235 -12.79813 -12.65126 -12.42211 -12.22983 -12.12462 -11.97261 -11.60573 -11.45647 -11.34677 -10.79143 -10.59382 -10.51497 -10.31871 -8.86575 -8.36909 -6.32498 1.20501 1.29337 1.41335 2.23785 2.89736 3.10021 3.73630 3.83280 4.05997 4.18163 4.35008 4.40894 4.46890 4.51848 4.60359 4.66502 4.77146 4.89970 4.95801 5.00443 5.04220 5.12594 5.16881 5.26663 5.41422 5.42912 5.44989 5.50437 5.58837 5.68371 5.72930 6.20364 6.65979 6.66435 6.85276 7.32501 8.79730 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.021507 B = 0.019262 C = 0.014225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.593819 B = 1453.292759 C = 1967.873096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.055 3.945 3 N -0.688 5.688 4 C 0.240 3.760 5 C -0.530 4.530 6 H 0.025 0.975 7 C 0.022 3.978 8 N -0.935 5.935 9 Si 0.951 3.049 10 H -0.284 1.284 11 H -0.315 1.315 12 H -0.225 1.225 13 C -0.081 4.081 14 C -0.108 4.108 15 C -0.075 4.075 16 C -0.148 4.148 17 H 0.092 0.908 18 C -0.154 4.154 19 C -0.155 4.155 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.006 0.994 25 H 0.067 0.933 26 H 0.323 0.677 27 H 0.262 0.738 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 2.395 11.174 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 N -0.321 5.321 4 C 0.150 3.850 5 C -0.569 4.569 6 H 0.043 0.957 7 C -0.177 4.177 8 N -0.574 5.574 9 Si 0.783 3.217 10 H -0.213 1.213 11 H -0.245 1.245 12 H -0.150 1.150 13 C -0.119 4.119 14 C -0.146 4.146 15 C -0.112 4.112 16 C -0.166 4.166 17 H 0.111 0.889 18 C -0.191 4.191 19 C -0.173 4.173 20 H 0.078 0.922 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.024 0.976 25 H 0.086 0.914 26 H 0.143 0.857 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.069 2.454 11.713 12.355 hybrid contribution 0.106 0.330 -2.085 2.113 sum -2.963 2.784 9.628 10.452 Atomic orbital electron populations 1.21744 0.94276 1.02044 1.01737 1.21781 0.95497 0.90896 0.99240 1.61479 1.07101 1.11666 1.51902 1.17550 0.85441 0.89734 0.92228 1.21731 1.45916 0.95522 0.93779 0.95687 1.25869 0.95045 1.01443 0.95312 1.70163 1.40641 1.39792 1.06846 0.86078 0.80209 0.80041 0.75355 1.21347 1.24492 1.15000 1.20630 0.95600 0.97962 0.97663 1.20732 0.96046 0.97486 1.00368 1.20532 0.99422 0.92213 0.99021 1.21737 0.90744 1.01163 1.02998 0.88934 1.22670 0.99501 1.00123 0.96774 1.21843 1.03423 0.97577 0.94471 0.92228 0.91126 0.91470 0.93928 0.97570 0.91433 0.85677 0.92854 0.92041 0.94242 0.90661 0.94958 0.89991 0.91177 0.88830 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 10.12 71.98 0.73 -3.51 16 2 C 0.06 2.12 5.46 86.30 0.47 2.59 16 3 N -0.69 -28.81 6.07 -479.05 -2.91 -31.72 16 4 C 0.24 10.81 0.41 1.75 0.00 10.81 16 5 C -0.53 -29.64 6.92 25.60 0.18 -29.46 16 6 H 0.02 1.58 7.96 -2.91 -0.02 1.56 16 7 C 0.02 1.28 5.27 84.65 0.45 1.73 16 8 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 9 Si 0.95 45.85 23.56 68.60 1.62 47.47 16 10 H -0.28 -13.49 6.67 99.48 0.66 -12.83 16 11 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 12 H -0.23 -9.81 4.83 99.48 0.48 -9.33 16 13 C -0.08 -3.20 3.18 29.51 0.09 -3.11 16 14 C -0.11 -3.94 5.67 29.51 0.17 -3.77 16 15 C -0.07 -2.37 5.82 29.79 0.17 -2.20 16 16 C -0.15 -5.39 6.12 -12.02 -0.07 -5.46 16 17 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 18 C -0.15 -5.21 9.55 29.75 0.28 -4.92 16 19 C -0.16 -6.67 3.70 -11.88 -0.04 -6.71 16 20 H 0.06 2.81 1.54 -2.39 0.00 2.81 16 21 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.01 0.27 7.11 -2.39 -0.02 0.25 16 25 H 0.07 2.41 6.73 -2.39 -0.02 2.40 16 26 H 0.32 14.19 5.01 -89.69 -0.45 13.74 16 27 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.06 2.19 7.84 -2.39 -0.02 2.17 16 29 H 0.04 1.64 6.86 -2.39 -0.02 1.62 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.03 1.40 7.75 -2.39 -0.02 1.38 16 32 H 0.08 2.16 8.04 -2.39 -0.02 2.14 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.09 2.83 8.14 -2.39 -0.02 2.82 16 35 H 0.11 3.33 7.81 -2.39 -0.02 3.31 16 Total: -1.00 -63.87 256.37 1.78 -62.10 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.34 Total: 24.48 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 2.42 Total: -44.01 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -2.61 Total: -90.03 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.62 Total: 47.47 kcal Total: -63.87 1.78 -62.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.346 kcal (2) G-P(sol) polarization free energy of solvation -63.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds