Wall clock time and date at job start Mon Mar 30 2020 02:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48680 * 111.00238 * 2 1 4 4 C 1.54992 * 103.31873 * 200.95290 * 3 2 1 5 5 C 1.54743 * 102.93723 * 37.07624 * 4 3 2 6 6 H 1.08993 * 110.35745 * 96.94084 * 5 4 3 7 7 C 1.50696 * 110.35121 * 219.12211 * 5 4 3 8 8 H 1.08000 * 120.00617 * 54.72962 * 7 5 4 9 9 C 1.37879 * 119.99968 * 234.72843 * 7 5 4 10 10 N 1.31512 * 119.99826 * 0.02562 * 9 7 5 11 11 Si 1.86799 * 120.00366 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47030 * 90.00138 * 11 9 7 13 13 H 1.48494 * 109.47411 * 210.00415 * 11 9 7 14 14 H 1.48502 * 109.47124 * 330.00295 * 11 9 7 15 15 C 1.47287 * 111.00078 * 242.77588 * 2 1 3 16 16 C 1.53707 * 110.41666 * 24.75593 * 15 2 1 17 17 C 1.55020 * 104.05740 * 216.15659 * 16 15 2 18 18 C 1.54944 * 102.82228 * 37.44583 * 17 16 15 19 19 C 1.53305 * 110.66330 * 266.24116 * 15 2 1 20 20 H 1.08994 * 109.46973 * 50.74278 * 1 2 3 21 21 H 1.08993 * 109.46633 * 290.73878 * 1 2 3 22 22 H 1.09003 * 109.46914 * 170.73721 * 1 2 3 23 23 H 1.09001 * 110.64767 * 319.40534 * 3 2 1 24 24 H 1.08995 * 110.65111 * 82.49396 * 3 2 1 25 25 H 1.09001 * 110.71962 * 155.43975 * 4 3 2 26 26 H 1.09002 * 110.71850 * 278.70859 * 4 3 2 27 27 H 0.97002 * 120.00411 * 179.97438 * 10 9 7 28 28 H 1.09007 * 110.50509 * 334.79600 * 16 15 2 29 29 H 1.08998 * 110.51886 * 97.50455 * 16 15 2 30 30 H 1.08997 * 110.74164 * 279.11508 * 17 16 15 31 31 H 1.09002 * 110.74423 * 155.77968 * 17 16 15 32 32 H 1.08996 * 110.47864 * 203.69253 * 18 17 16 33 33 H 1.08994 * 110.48216 * 81.05307 * 18 17 16 34 34 H 1.08999 * 110.07628 * 239.51391 * 19 15 2 35 35 H 1.09005 * 110.07149 * 1.05438 * 19 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0019 1.3880 0.0000 4 6 3.4448 1.2165 -0.5393 5 6 3.2858 0.1089 -1.6081 6 1 3.1879 0.5502 -2.5999 7 6 4.4627 -0.8314 -1.5676 8 1 4.7336 -1.3181 -0.6423 9 6 5.1939 -1.0703 -2.7119 10 7 4.8645 -0.4773 -3.8385 11 14 6.6533 -2.2352 -2.6616 12 1 6.1958 -3.6152 -2.9641 13 1 7.6577 -1.8142 -3.6711 14 1 7.2667 -2.2022 -1.3095 15 6 1.9968 -0.6290 -1.2227 16 6 0.9678 -0.5361 -2.3607 17 6 1.1357 -1.8713 -3.1302 18 6 1.4011 -2.8916 -1.9947 19 6 2.2785 -2.1174 -0.9870 20 1 -0.3633 0.6503 -0.7957 21 1 -0.3632 0.3639 0.9610 22 1 -0.3633 -1.0143 -0.1654 23 1 1.4166 2.0244 -0.6637 24 1 2.0153 1.7946 1.0112 25 1 3.7995 2.1421 -0.9929 26 1 4.1174 0.8926 0.2549 27 1 5.3791 -0.6450 -4.6435 28 1 -0.0414 -0.4522 -1.9570 29 1 1.1918 0.3100 -3.0103 30 1 1.9861 -1.8207 -3.8101 31 1 0.2229 -2.1233 -3.6700 32 1 1.9370 -3.7593 -2.3792 33 1 0.4639 -3.1963 -1.5290 34 1 3.3320 -2.3319 -1.1664 35 1 2.0085 -2.3924 0.0326 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:42 Heat of formation + Delta-G solvation = -8.586621 kcal Electronic energy + Delta-G solvation = -15088.824053 eV Core-core repulsion = 12892.876173 eV Total energy + Delta-G solvation = -2195.947880 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.08899 -36.17734 -35.15930 -32.62042 -29.79734 -29.37984 -27.40477 -25.42495 -23.97086 -21.65548 -21.40028 -19.30606 -18.08114 -16.92360 -16.62284 -16.08217 -15.90255 -15.03521 -14.68736 -14.08532 -13.82595 -13.55922 -13.47948 -12.92718 -12.72483 -12.44282 -12.28209 -12.16768 -11.98542 -11.83798 -11.66541 -11.60721 -11.18786 -10.94712 -10.77481 -10.57895 -10.42352 -9.07615 -8.06797 -6.06367 1.40994 1.43353 1.52021 2.45742 3.20070 3.32164 3.97547 3.99411 4.11215 4.33751 4.38389 4.49859 4.66426 4.72453 4.80488 4.84708 4.91470 4.94489 4.98616 5.04420 5.09902 5.16262 5.29241 5.32220 5.34439 5.58685 5.59099 5.66853 5.73859 5.88043 6.07709 6.36313 6.45745 6.54332 7.02221 7.50584 9.01950 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033445 B = 0.013659 C = 0.011552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.000787 B = 2049.441870 C = 2423.312728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.525 5.525 3 C 0.042 3.958 4 C -0.121 4.121 5 C 0.026 3.974 6 H 0.035 0.965 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.017 3.983 10 N -0.925 5.925 11 Si 0.939 3.061 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.099 3.901 16 C -0.144 4.144 17 C -0.111 4.111 18 C -0.113 4.113 19 C -0.115 4.115 20 H 0.031 0.969 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.037 0.963 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.258 0.742 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.133 -0.693 4.536 9.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.248 5.248 3 C -0.086 4.086 4 C -0.159 4.159 5 C 0.007 3.993 6 H 0.053 0.947 7 C -0.526 4.526 8 H 0.068 0.932 9 C -0.181 4.181 10 N -0.565 5.565 11 Si 0.766 3.234 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.193 1.193 15 C 0.009 3.991 16 C -0.182 4.182 17 C -0.149 4.149 18 C -0.151 4.151 19 C -0.153 4.153 20 H 0.050 0.950 21 H 0.094 0.906 22 H 0.087 0.913 23 H 0.056 0.944 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.917 -0.962 4.839 9.328 hybrid contribution 0.812 0.050 -1.138 1.399 sum -7.104 -0.912 3.701 8.062 Atomic orbital electron populations 1.22569 0.88043 1.01579 1.00918 1.64734 1.08303 1.14457 1.37273 1.23199 0.95141 0.89952 1.00325 1.22664 0.95648 0.98607 0.99005 1.19796 0.92132 0.92927 0.94494 0.94686 1.21083 1.12000 1.24941 0.94576 0.93153 1.25589 0.99545 0.97442 0.95513 1.70016 1.41351 1.44720 1.00386 0.85837 0.80035 0.79730 0.77837 1.20126 1.21380 1.19310 1.22094 0.94572 0.95524 0.86881 1.23095 1.00168 0.97416 0.97542 1.22295 1.00115 0.95120 0.97403 1.22302 0.99307 0.97295 0.96168 1.22426 1.02289 0.93174 0.97387 0.95026 0.90558 0.91273 0.94436 0.89616 0.93577 0.92927 0.93268 0.89187 0.94624 0.94329 0.90848 0.92918 0.90937 0.89841 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 8.18 127.69 1.04 1.54 16 2 N -0.52 -19.48 5.09 -860.05 -4.38 -23.86 16 3 C 0.04 1.50 6.57 86.64 0.57 2.07 16 4 C -0.12 -5.28 6.61 31.87 0.21 -5.06 16 5 C 0.03 1.29 2.89 -10.80 -0.03 1.26 16 6 H 0.03 1.98 6.10 -2.39 -0.01 1.96 16 7 C -0.49 -26.20 5.54 25.60 0.14 -26.06 16 8 H 0.05 2.73 7.24 -2.91 -0.02 2.71 16 9 C 0.02 0.94 5.46 84.66 0.46 1.40 16 10 N -0.92 -53.61 12.64 21.45 0.27 -53.34 16 11 Si 0.94 43.57 29.54 68.60 2.03 45.59 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 C 0.10 4.17 0.77 3.94 0.00 4.17 16 16 C -0.14 -5.57 5.35 31.52 0.17 -5.40 16 17 C -0.11 -4.25 6.91 31.95 0.22 -4.03 16 18 C -0.11 -4.10 6.84 31.74 0.22 -3.88 16 19 C -0.12 -4.84 5.93 31.18 0.19 -4.65 16 20 H 0.03 0.90 6.38 -2.39 -0.02 0.88 16 21 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.07 1.93 7.63 -2.39 -0.02 1.92 16 23 H 0.04 1.30 7.85 -2.39 -0.02 1.28 16 24 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 2.35 7.86 -2.39 -0.02 2.33 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.09 2.96 4.64 -2.38 -0.01 2.95 16 29 H 0.03 1.51 7.36 -2.39 -0.02 1.49 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 4.06 4.64 -2.39 -0.01 4.05 16 35 H 0.05 2.05 7.94 -2.38 -0.02 2.03 16 Total: -1.00 -58.36 262.60 2.16 -56.20 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 1.05 Total: 14.07 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 3.19 Total: -38.66 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -4.11 Total: -77.21 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -58.36 2.16 -56.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.613 kcal (2) G-P(sol) polarization free energy of solvation -58.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds