Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47851 * 110.99856 * 2 1 4 4 C 1.54908 * 104.79756 * 213.64066 * 3 2 1 5 5 C 1.55141 * 101.65222 * 37.06753 * 4 3 2 6 6 H 1.09005 * 110.85776 * 82.80082 * 5 4 3 7 7 C 1.50697 * 110.70599 * 205.96390 * 5 4 3 8 8 H 1.08005 * 119.99841 * 113.60196 * 7 5 4 9 9 C 1.37875 * 120.00058 * 293.60122 * 7 5 4 10 10 N 1.31517 * 120.00197 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00138 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47152 * 59.99811 * 11 9 7 13 13 H 1.48493 * 109.47465 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47245 * 300.00071 * 11 9 7 15 15 C 1.47445 * 110.99997 * 239.16045 * 2 1 3 16 16 H 1.08994 * 109.88952 * 242.65942 * 15 2 1 17 17 C 1.53000 * 109.88807 * 3.84783 * 15 2 1 18 18 C 1.53006 * 109.47259 * 183.03174 * 17 15 2 19 19 C 1.52998 * 117.49642 * 243.43550 * 18 17 15 20 20 C 1.52997 * 117.49873 * 174.77705 * 18 17 15 21 21 H 1.09008 * 109.46653 * 182.07274 * 1 2 3 22 22 H 1.08996 * 109.46884 * 302.06316 * 1 2 3 23 23 H 1.08989 * 109.47430 * 62.07203 * 1 2 3 24 24 H 1.09006 * 110.37087 * 332.46888 * 3 2 1 25 25 H 1.08995 * 110.37249 * 94.80850 * 3 2 1 26 26 H 1.09004 * 110.98726 * 278.98057 * 4 3 2 27 27 H 1.08995 * 111.02406 * 155.17348 * 4 3 2 28 28 H 0.97001 * 119.99840 * 180.02562 * 10 9 7 29 29 H 1.09002 * 109.47417 * 303.03385 * 17 15 2 30 30 H 1.09002 * 109.47341 * 63.03034 * 17 15 2 31 31 H 1.08995 * 115.54408 * 29.10698 * 18 17 15 32 32 H 1.08997 * 117.50446 * 359.97438 * 19 18 17 33 33 H 1.08998 * 117.49602 * 145.02436 * 19 18 17 34 34 H 1.09003 * 117.49652 * 214.98146 * 20 18 17 35 35 H 1.09003 * 117.49717 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3046 1.3029 -0.8297 5 6 2.9157 0.2823 -1.9315 6 1 2.3751 0.7725 -2.7412 7 6 4.1382 -0.4228 -2.4601 8 1 4.2679 -1.4811 -2.2877 9 6 5.0909 0.2830 -3.1637 10 7 4.9332 1.5717 -3.3732 11 14 6.6059 -0.5912 -3.8195 12 1 6.1906 -1.6656 -4.7567 13 1 7.4692 0.3830 -4.5340 14 1 7.3626 -1.1861 -2.6886 15 6 1.9974 -0.7057 -1.1819 16 1 2.5697 -1.5783 -0.8676 17 6 0.8437 -1.1356 -2.0903 18 6 1.3963 -1.9319 -3.2742 19 6 1.2064 -1.3415 -4.6728 20 6 0.3860 -2.5582 -4.2374 21 1 -0.3633 -1.0271 0.0372 22 1 -0.3633 0.5455 0.8709 23 1 -0.3634 0.4813 -0.9079 24 1 1.2888 2.0593 -0.4723 25 1 2.2147 1.7039 1.0182 26 1 4.1302 0.9283 -0.2244 27 1 3.5500 2.2719 -1.2641 28 1 5.6033 2.0682 -3.8685 29 1 0.1495 -1.7582 -1.5260 30 1 0.3224 -0.2519 -2.4584 31 1 2.3164 -2.4834 -3.0812 32 1 0.6875 -0.3861 -4.7497 33 1 2.0015 -1.5050 -5.4003 34 1 0.6417 -3.5216 -4.6786 35 1 -0.6724 -2.4033 -4.0275 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = 22.796937 kcal Electronic energy + Delta-G solvation = -14582.435965 eV Core-core repulsion = 12387.848978 eV Total energy + Delta-G solvation = -2194.586987 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.83499 -36.34868 -33.10672 -30.60672 -30.14272 -26.07433 -24.91894 -23.29583 -21.82214 -20.17808 -19.80021 -18.64310 -16.45998 -15.21701 -14.76217 -14.47362 -14.28565 -13.75825 -13.30132 -12.76984 -12.44153 -11.88591 -11.56968 -11.30653 -11.01929 -10.96483 -10.74297 -10.63300 -10.51147 -10.45480 -10.08393 -9.77475 -9.59799 -9.41095 -8.89256 -8.80472 -8.33152 -7.48017 -5.97324 -3.97935 3.33645 3.38583 3.41182 4.41012 4.46938 4.81050 5.28515 5.36670 5.48235 5.53685 5.70147 5.82237 5.96032 5.97074 6.04496 6.13143 6.20393 6.21147 6.34110 6.38722 6.46201 6.54752 6.64896 6.74813 6.89018 7.03215 7.24307 7.28477 7.65146 7.68308 7.88277 7.95780 8.07114 8.48026 9.02030 9.64577 11.12958 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.013747 C = 0.009695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.973389 B = 2036.327497 C = 2887.524892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.035 3.965 4 C -0.109 4.109 5 C 0.048 3.952 6 H 0.033 0.967 7 C -0.498 4.498 8 H 0.054 0.946 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.886 3.114 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.278 1.278 15 C 0.074 3.926 16 H 0.077 0.923 17 C -0.094 4.094 18 C -0.120 4.120 19 C -0.165 4.165 20 C -0.202 4.202 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.025 0.975 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.259 0.741 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 -3.366 1.637 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.259 5.259 3 C -0.093 4.093 4 C -0.148 4.148 5 C 0.029 3.971 6 H 0.051 0.949 7 C -0.536 4.536 8 H 0.073 0.927 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.714 3.286 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.034 4.034 16 H 0.095 0.905 17 C -0.132 4.132 18 C -0.139 4.139 19 C -0.202 4.202 20 C -0.239 4.239 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.300 -3.459 2.019 8.326 hybrid contribution 0.590 0.080 -1.188 1.329 sum -6.709 -3.379 0.831 7.558 Atomic orbital electron populations 1.22498 0.89975 1.01003 0.99454 1.63766 1.06240 1.14828 1.41084 1.23144 0.97920 0.88739 0.99448 1.22668 0.93795 1.01423 0.96900 1.19802 0.93647 0.91183 0.92485 0.94907 1.20955 1.04159 0.94739 1.33784 0.92743 1.24924 0.97976 0.94792 0.96078 1.69946 1.35124 1.06837 1.41133 0.86765 0.83348 0.79385 0.79124 1.20396 1.21491 1.20339 1.22688 0.94567 0.98435 0.87685 0.90535 1.21690 0.97905 0.98142 0.95465 1.22106 0.99309 1.01767 0.90673 1.22812 1.02041 0.96299 0.99011 1.22999 0.96920 0.97488 1.06512 0.91928 0.92908 0.95688 0.95153 0.92202 0.92549 0.91329 0.93156 0.92570 0.92740 0.87348 0.89639 0.89223 0.89704 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.26 60.06 0.50 0.81 16 2 N -0.54 -10.48 5.44 -231.56 -1.26 -11.74 16 3 C 0.04 0.70 6.73 -2.29 -0.02 0.68 16 4 C -0.11 -2.57 5.94 -24.59 -0.15 -2.72 16 5 C 0.05 1.17 1.92 -89.95 -0.17 1.00 16 6 H 0.03 0.88 7.80 -51.93 -0.40 0.48 16 7 C -0.50 -13.19 7.73 -34.44 -0.27 -13.45 16 8 H 0.05 1.43 7.31 -52.48 -0.38 1.05 16 9 C 0.06 1.73 5.36 -17.82 -0.10 1.64 16 10 N -0.89 -25.34 12.48 55.43 0.69 -24.64 16 11 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.07 1.54 3.04 -66.72 -0.20 1.34 16 16 H 0.08 1.70 7.63 -51.93 -0.40 1.31 16 17 C -0.09 -1.71 3.62 -26.73 -0.10 -1.81 16 18 C -0.12 -2.18 4.81 -90.62 -0.44 -2.62 16 19 C -0.16 -2.92 10.18 -26.70 -0.27 -3.19 16 20 C -0.20 -3.09 10.25 -26.70 -0.27 -3.37 16 21 H 0.06 0.93 6.72 -51.92 -0.35 0.58 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.02 0.40 6.50 -51.94 -0.34 0.07 16 24 H 0.03 0.58 7.80 -51.93 -0.40 0.18 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.38 8.04 -51.93 -0.42 0.97 16 27 H 0.07 1.72 7.76 -51.93 -0.40 1.32 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.06 0.93 6.42 -51.93 -0.33 0.59 16 30 H 0.05 1.01 6.56 -51.93 -0.34 0.67 16 31 H 0.11 2.14 7.60 -51.93 -0.39 1.74 16 32 H 0.09 1.51 8.03 -51.93 -0.42 1.10 16 33 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 273.80 15.07 4.13 4.13 Total: -1.00 -27.38 273.80 -8.77 -36.16 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.83 Total: 1.62 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.48 Total: -21.68 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.57 Total: -36.38 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.38 -8.77 -36.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.954 kcal (2) G-P(sol) polarization free energy of solvation -27.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds