Wall clock time and date at job start Mon Mar 30 2020 02:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47851 * 110.99856 * 2 1 4 4 C 1.54908 * 104.79756 * 213.64066 * 3 2 1 5 5 C 1.55141 * 101.65222 * 37.06753 * 4 3 2 6 6 H 1.09005 * 110.85776 * 82.80082 * 5 4 3 7 7 C 1.50697 * 110.70599 * 205.96390 * 5 4 3 8 8 H 1.08005 * 119.99841 * 113.60196 * 7 5 4 9 9 C 1.37875 * 120.00058 * 293.60122 * 7 5 4 10 10 N 1.31517 * 120.00197 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 120.00138 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47152 * 59.99811 * 11 9 7 13 13 H 1.48493 * 109.47465 * 180.02562 * 11 9 7 14 14 H 1.48509 * 109.47245 * 300.00071 * 11 9 7 15 15 C 1.47445 * 110.99997 * 239.16045 * 2 1 3 16 16 H 1.08994 * 109.88952 * 242.65942 * 15 2 1 17 17 C 1.53000 * 109.88807 * 3.84783 * 15 2 1 18 18 C 1.53006 * 109.47259 * 183.03174 * 17 15 2 19 19 C 1.52998 * 117.49642 * 243.43550 * 18 17 15 20 20 C 1.52997 * 117.49873 * 174.77705 * 18 17 15 21 21 H 1.09008 * 109.46653 * 182.07274 * 1 2 3 22 22 H 1.08996 * 109.46884 * 302.06316 * 1 2 3 23 23 H 1.08989 * 109.47430 * 62.07203 * 1 2 3 24 24 H 1.09006 * 110.37087 * 332.46888 * 3 2 1 25 25 H 1.08995 * 110.37249 * 94.80850 * 3 2 1 26 26 H 1.09004 * 110.98726 * 278.98057 * 4 3 2 27 27 H 1.08995 * 111.02406 * 155.17348 * 4 3 2 28 28 H 0.97001 * 119.99840 * 180.02562 * 10 9 7 29 29 H 1.09002 * 109.47417 * 303.03385 * 17 15 2 30 30 H 1.09002 * 109.47341 * 63.03034 * 17 15 2 31 31 H 1.08995 * 115.54408 * 29.10698 * 18 17 15 32 32 H 1.08997 * 117.50446 * 359.97438 * 19 18 17 33 33 H 1.08998 * 117.49602 * 145.02436 * 19 18 17 34 34 H 1.09003 * 117.49652 * 214.98146 * 20 18 17 35 35 H 1.09003 * 117.49717 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3803 0.0000 4 6 3.3046 1.3029 -0.8297 5 6 2.9157 0.2823 -1.9315 6 1 2.3751 0.7725 -2.7412 7 6 4.1382 -0.4228 -2.4601 8 1 4.2679 -1.4811 -2.2877 9 6 5.0909 0.2830 -3.1637 10 7 4.9332 1.5717 -3.3732 11 14 6.6059 -0.5912 -3.8195 12 1 6.1906 -1.6656 -4.7567 13 1 7.4692 0.3830 -4.5340 14 1 7.3626 -1.1861 -2.6886 15 6 1.9974 -0.7057 -1.1819 16 1 2.5697 -1.5783 -0.8676 17 6 0.8437 -1.1356 -2.0903 18 6 1.3963 -1.9319 -3.2742 19 6 1.2064 -1.3415 -4.6728 20 6 0.3860 -2.5582 -4.2374 21 1 -0.3633 -1.0271 0.0372 22 1 -0.3633 0.5455 0.8709 23 1 -0.3634 0.4813 -0.9079 24 1 1.2888 2.0593 -0.4723 25 1 2.2147 1.7039 1.0182 26 1 4.1302 0.9283 -0.2244 27 1 3.5500 2.2719 -1.2641 28 1 5.6033 2.0682 -3.8685 29 1 0.1495 -1.7582 -1.5260 30 1 0.3224 -0.2519 -2.4584 31 1 2.3164 -2.4834 -3.0812 32 1 0.6875 -0.3861 -4.7497 33 1 2.0015 -1.5050 -5.4003 34 1 0.6417 -3.5216 -4.6786 35 1 -0.6724 -2.4033 -4.0275 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158528.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:38 Heat of formation + Delta-G solvation = 6.831270 kcal Electronic energy + Delta-G solvation = -14583.128288 eV Core-core repulsion = 12387.848978 eV Total energy + Delta-G solvation = -2195.279310 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44988 -37.77227 -35.07982 -32.39084 -31.76532 -27.89972 -26.43617 -25.10120 -23.14274 -21.88031 -21.40683 -20.28132 -18.46034 -16.80648 -16.52752 -16.19819 -15.81218 -15.28313 -14.81924 -14.44783 -14.03068 -13.64086 -13.17599 -12.96738 -12.91544 -12.60033 -12.39868 -12.32803 -12.04447 -12.02979 -11.79598 -11.48730 -11.28632 -10.94485 -10.84324 -10.47415 -10.37188 -9.03944 -8.08045 -6.13793 1.41182 1.41972 1.48739 2.45147 3.03914 3.24210 3.29268 3.87520 4.09418 4.13110 4.27422 4.30047 4.44887 4.49701 4.59686 4.72009 4.80176 4.83138 4.84110 4.92037 5.02271 5.05828 5.12163 5.18545 5.33110 5.39835 5.45386 5.54532 5.67345 5.77631 5.96669 6.23198 6.39277 6.44555 6.93041 7.51437 9.01553 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.013747 C = 0.009695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.973389 B = 2036.327497 C = 2887.524892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.543 5.543 3 C 0.046 3.954 4 C -0.108 4.108 5 C 0.048 3.952 6 H 0.002 0.998 7 C -0.503 4.503 8 H 0.051 0.949 9 C 0.015 3.985 10 N -0.922 5.922 11 Si 0.943 3.057 12 H -0.272 1.272 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.081 3.919 16 H 0.060 0.940 17 C -0.082 4.082 18 C -0.142 4.142 19 C -0.184 4.184 20 C -0.162 4.162 21 H 0.080 0.920 22 H 0.073 0.927 23 H 0.025 0.975 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.044 0.956 28 H 0.257 0.743 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.994 -4.588 2.135 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.267 5.267 3 C -0.082 4.082 4 C -0.147 4.147 5 C 0.028 3.972 6 H 0.020 0.980 7 C -0.542 4.542 8 H 0.069 0.931 9 C -0.183 4.183 10 N -0.562 5.562 11 Si 0.769 3.231 12 H -0.197 1.197 13 H -0.214 1.214 14 H -0.199 1.199 15 C -0.027 4.027 16 H 0.078 0.922 17 C -0.120 4.120 18 C -0.161 4.161 19 C -0.221 4.221 20 C -0.199 4.199 21 H 0.098 0.902 22 H 0.092 0.908 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.766 -4.695 2.524 10.259 hybrid contribution 1.037 0.467 -1.330 1.750 sum -7.729 -4.227 1.194 8.890 Atomic orbital electron populations 1.22611 0.87366 1.02578 1.00453 1.63746 1.08693 1.14114 1.40108 1.23041 0.95868 0.89450 0.99804 1.22500 0.95354 0.99760 0.97057 1.19684 0.93433 0.91986 0.92062 0.98009 1.21244 1.04930 0.94656 1.33370 0.93098 1.25620 1.00675 0.95395 0.96610 1.70071 1.35982 1.08059 1.42072 0.85847 0.80181 0.78423 0.78632 1.19709 1.21425 1.19870 1.22454 0.95019 0.96942 0.88306 0.92158 1.21571 0.97042 0.98321 0.95079 1.22060 1.00085 1.02906 0.91038 1.22805 1.02983 0.97680 0.98681 1.23074 0.97228 0.96818 1.02806 0.90185 0.90811 0.95658 0.94392 0.90208 0.94288 0.93770 0.93395 0.89987 0.93125 0.89454 0.90104 0.90457 0.87966 0.87603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 8.26 127.69 1.06 1.57 16 2 N -0.54 -20.24 5.44 -886.53 -4.83 -25.06 16 3 C 0.05 1.78 6.73 86.77 0.58 2.36 16 4 C -0.11 -5.19 5.94 31.98 0.19 -5.00 16 5 C 0.05 2.37 1.92 -10.36 -0.02 2.35 16 6 H 0.00 0.10 7.80 -2.38 -0.02 0.08 16 7 C -0.50 -27.30 7.73 25.60 0.20 -27.10 16 8 H 0.05 2.73 7.31 -2.91 -0.02 2.71 16 9 C 0.02 0.84 5.36 84.65 0.45 1.30 16 10 N -0.92 -53.88 12.48 21.45 0.27 -53.61 16 11 Si 0.94 44.07 29.54 68.60 2.03 46.09 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 14 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 15 C 0.08 3.33 3.04 45.26 0.14 3.47 16 16 H 0.06 2.68 7.63 -2.39 -0.02 2.66 16 17 C -0.08 -2.86 3.62 30.60 0.11 -2.75 16 18 C -0.14 -5.04 4.81 -10.79 -0.05 -5.09 16 19 C -0.18 -6.46 10.18 30.62 0.31 -6.15 16 20 C -0.16 -4.51 10.25 30.62 0.31 -4.20 16 21 H 0.08 2.05 6.72 -2.38 -0.02 2.03 16 22 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.02 0.74 6.50 -2.39 -0.02 0.72 16 24 H 0.04 1.41 7.80 -2.38 -0.02 1.39 16 25 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 26 H 0.04 1.96 8.04 -2.39 -0.02 1.94 16 27 H 0.04 2.29 7.76 -2.39 -0.02 2.27 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.08 2.42 6.42 -2.39 -0.02 2.41 16 30 H 0.05 1.80 6.56 -2.39 -0.02 1.79 16 31 H 0.09 3.46 7.60 -2.39 -0.02 3.44 16 32 H 0.08 2.87 8.03 -2.39 -0.02 2.85 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.83 16 34 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -59.31 273.80 1.79 -57.52 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.04 Total: 14.30 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 3.28 Total: -39.24 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -4.56 Total: -78.68 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -59.31 1.79 -57.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158528.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.352 kcal (2) G-P(sol) polarization free energy of solvation -59.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds