Wall clock time and date at job start Mon Mar 30 2020 02:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.49002 * 111.16814 * 2 1 4 4 C 1.54940 * 103.26040 * 159.69123 * 3 2 1 5 5 C 1.54585 * 102.91967 * 322.54031 * 4 3 2 6 6 H 1.09006 * 110.31097 * 263.03711 * 5 4 3 7 7 C 1.50701 * 110.39161 * 140.91563 * 5 4 3 8 8 H 1.08003 * 120.00605 * 244.23193 * 7 5 4 9 9 C 1.37880 * 119.99947 * 64.23581 * 7 5 4 10 10 N 1.31515 * 119.99731 * 359.97438 * 9 7 5 11 11 Si 1.86807 * 120.00031 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47078 * 59.99810 * 11 9 7 13 13 H 1.48491 * 109.47033 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46805 * 299.99781 * 11 9 7 15 15 C 1.47907 * 111.00094 * 117.19828 * 2 1 3 16 16 H 1.09001 * 109.91579 * 333.50691 * 15 2 1 17 17 C 1.52997 * 109.91682 * 94.60086 * 15 2 1 18 18 C 1.52995 * 109.47585 * 288.21862 * 17 15 2 19 19 C 1.52995 * 117.50292 * 241.92199 * 18 17 15 20 20 C 1.52999 * 117.50215 * 173.26249 * 18 17 15 21 21 H 1.08999 * 109.47360 * 301.86400 * 1 2 3 22 22 H 1.08995 * 109.47455 * 61.86188 * 1 2 3 23 23 H 1.09004 * 109.47279 * 181.86806 * 1 2 3 24 24 H 1.09004 * 110.69135 * 41.22646 * 3 2 1 25 25 H 1.09002 * 110.75461 * 278.18807 * 3 2 1 26 26 H 1.09001 * 110.72582 * 204.18165 * 4 3 2 27 27 H 1.09000 * 110.87441 * 80.97042 * 4 3 2 28 28 H 0.97001 * 119.99350 * 180.02562 * 10 9 7 29 29 H 1.09002 * 109.47272 * 48.22705 * 17 15 2 30 30 H 1.09006 * 109.46847 * 168.21583 * 17 15 2 31 31 H 1.09000 * 115.54893 * 27.59894 * 18 17 15 32 32 H 1.09000 * 117.49600 * 0.02562 * 19 18 17 33 33 H 1.09000 * 117.49560 * 145.01555 * 19 18 17 34 34 H 1.09000 * 117.49989 * 214.98497 * 20 18 17 35 35 H 1.09004 * 117.49742 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0070 1.3895 0.0000 4 6 3.4542 1.2102 0.5234 5 6 3.3000 0.1066 1.5948 6 1 3.2163 0.5511 2.5866 7 6 4.4706 -0.8413 1.5446 8 1 4.3164 -1.8763 1.2776 9 6 5.7386 -0.3870 1.8396 10 7 5.9265 0.8735 2.1643 11 14 7.1897 -1.5618 1.7767 12 1 7.3176 -2.1174 0.4055 13 1 8.4328 -0.8323 2.1337 14 1 6.9720 -2.6695 2.7414 15 6 1.9990 -0.6311 1.2281 16 1 1.2758 -0.5332 2.0378 17 6 2.2935 -2.1099 0.9688 18 6 0.9763 -2.8777 0.8414 19 6 0.6987 -3.9794 1.8661 20 6 1.0527 -4.3474 0.4231 21 1 -0.3634 0.5425 0.8728 22 1 -0.3634 0.4846 -0.9061 23 1 -0.3634 -1.0271 0.0335 24 1 1.4309 2.0256 0.6720 25 1 2.0111 1.8021 -1.0089 26 1 3.8197 2.1343 0.9714 27 1 4.1185 0.8817 -0.2759 28 1 6.8186 1.1930 2.3715 29 1 2.8635 -2.2103 0.0451 30 1 2.8721 -2.5161 1.7985 31 1 0.1260 -2.2965 0.4845 32 1 1.4545 -4.1570 2.6312 33 1 -0.3342 -4.1231 2.1831 34 1 0.2526 -4.7331 -0.2087 35 1 2.0415 -4.7672 0.2382 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158529.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:40 Heat of formation + Delta-G solvation = 15.926794 kcal Electronic energy + Delta-G solvation = -14447.590031 eV Core-core repulsion = 12252.705132 eV Total energy + Delta-G solvation = -2194.884898 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26910 -37.78099 -35.11061 -32.47719 -31.82876 -27.80155 -26.10020 -25.46860 -23.14579 -22.05542 -21.10430 -20.73376 -18.08013 -16.85844 -16.59305 -16.15137 -15.79910 -15.26352 -14.75794 -14.49332 -13.76556 -13.55195 -13.52942 -12.99662 -12.87972 -12.63599 -12.40425 -12.29379 -12.19061 -11.95672 -11.59710 -11.39152 -11.13106 -10.74876 -10.61955 -10.44804 -10.43809 -9.19134 -8.07836 -6.13891 1.42718 1.43919 1.50674 2.46420 3.03611 3.24105 3.29837 3.87394 4.07520 4.18475 4.23478 4.31855 4.41066 4.47023 4.53397 4.72300 4.80528 4.84628 4.92695 4.94729 5.06343 5.15151 5.19205 5.27582 5.35473 5.41203 5.46788 5.63576 5.70430 5.77072 5.90415 6.23069 6.37423 6.46888 6.94069 7.52787 9.02453 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.025525 B = 0.012323 C = 0.008843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.683521 B = 2271.560490 C = 3165.496341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.523 5.523 3 C 0.038 3.962 4 C -0.086 4.086 5 C 0.033 3.967 6 H -0.007 1.007 7 C -0.522 4.522 8 H 0.078 0.922 9 C 0.009 3.991 10 N -0.925 5.925 11 Si 0.947 3.053 12 H -0.272 1.272 13 H -0.289 1.289 14 H -0.270 1.270 15 C 0.085 3.915 16 H 0.030 0.970 17 C -0.048 4.048 18 C -0.169 4.169 19 C -0.182 4.182 20 C -0.177 4.177 21 H 0.022 0.978 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.257 0.743 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -5.238 -3.297 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.247 5.247 3 C -0.090 4.090 4 C -0.125 4.125 5 C 0.014 3.986 6 H 0.011 0.989 7 C -0.560 4.560 8 H 0.096 0.904 9 C -0.189 4.189 10 N -0.565 5.565 11 Si 0.774 3.226 12 H -0.197 1.197 13 H -0.215 1.215 14 H -0.196 1.196 15 C -0.024 4.024 16 H 0.048 0.952 17 C -0.086 4.086 18 C -0.187 4.187 19 C -0.219 4.219 20 C -0.214 4.214 21 H 0.041 0.959 22 H 0.097 0.903 23 H 0.101 0.899 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.183 -5.410 -3.711 12.113 hybrid contribution 0.939 0.354 0.977 1.400 sum -9.244 -5.056 -2.735 10.885 Atomic orbital electron populations 1.22803 0.87526 1.02586 1.00882 1.64796 1.08345 1.14454 1.37119 1.23322 0.95392 0.89858 1.00398 1.22165 0.94034 0.98235 0.98032 1.19506 0.92543 0.93472 0.93041 0.98889 1.21866 0.92061 0.96970 1.45120 0.90442 1.25771 1.01492 0.96365 0.95275 1.70109 1.22307 1.15818 1.48282 0.85770 0.78906 0.79263 0.78707 1.19691 1.21494 1.19550 1.22244 0.95321 0.95351 0.89434 0.95193 1.21013 0.94165 0.92856 1.00539 1.22814 1.00012 0.91128 1.04728 1.23087 1.02616 1.03682 0.92544 1.22977 1.02899 0.97645 0.97840 0.95937 0.90323 0.89852 0.94290 0.89812 0.94531 0.94420 0.93436 0.92990 0.92540 0.86705 0.89812 0.87540 0.87386 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.23 127.69 1.18 1.46 16 2 N -0.52 -19.53 5.16 -882.77 -4.56 -24.09 16 3 C 0.04 1.45 6.58 86.56 0.57 2.02 16 4 C -0.09 -4.16 5.75 31.80 0.18 -3.98 16 5 C 0.03 1.71 2.86 -10.67 -0.03 1.68 16 6 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 7 C -0.52 -28.56 7.52 25.60 0.19 -28.36 16 8 H 0.08 4.08 4.71 -2.91 -0.01 4.06 16 9 C 0.01 0.50 5.34 84.66 0.45 0.95 16 10 N -0.93 -54.74 12.63 21.45 0.27 -54.47 16 11 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 C 0.08 3.54 2.55 45.06 0.11 3.66 16 16 H 0.03 1.23 7.69 -2.39 -0.02 1.21 16 17 C -0.05 -1.89 3.66 30.59 0.11 -1.77 16 18 C -0.17 -5.17 5.64 -10.80 -0.06 -5.23 16 19 C -0.18 -4.83 10.18 30.61 0.31 -4.51 16 20 C -0.18 -4.61 10.25 30.62 0.31 -4.30 16 21 H 0.02 0.63 8.01 -2.39 -0.02 0.61 16 22 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 23 H 0.08 2.17 4.78 -2.38 -0.01 2.16 16 24 H 0.04 1.41 7.99 -2.38 -0.02 1.39 16 25 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.04 1.87 8.12 -2.39 -0.02 1.85 16 27 H 0.04 1.96 7.86 -2.39 -0.02 1.94 16 28 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.05 2.24 7.64 -2.39 -0.02 2.22 16 30 H 0.06 2.41 6.25 -2.38 -0.01 2.39 16 31 H 0.12 3.27 4.47 -2.39 -0.01 3.26 16 32 H 0.08 2.36 8.03 -2.39 -0.02 2.34 16 33 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -60.16 270.92 2.13 -58.03 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 1.05 Total: 12.65 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 3.34 Total: -38.39 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -4.29 Total: -78.56 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -60.16 2.13 -58.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158529.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.954 kcal (2) G-P(sol) polarization free energy of solvation -60.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds