Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48567 * 111.00054 * 2 1 4 4 C 1.54379 * 104.59595 * 200.96198 * 3 2 1 5 5 C 1.54262 * 105.06141 * 23.84577 * 4 3 2 6 6 H 1.09001 * 110.32946 * 241.10660 * 5 4 3 7 7 C 1.50706 * 110.40914 * 118.93996 * 5 4 3 8 8 H 1.07999 * 119.99901 * 273.09646 * 7 5 4 9 9 C 1.37872 * 119.99767 * 93.09606 * 7 5 4 10 10 N 1.31515 * 120.00287 * 179.11614 * 9 7 5 11 11 Si 1.86805 * 120.00160 * 359.11512 * 9 7 5 12 12 H 1.48496 * 109.47246 * 90.84327 * 11 9 7 13 13 H 1.48500 * 109.47293 * 210.84810 * 11 9 7 14 14 H 1.48503 * 109.47170 * 330.84699 * 11 9 7 15 15 C 1.48561 * 111.00097 * 244.57852 * 2 1 3 16 16 H 1.08994 * 110.50930 * 40.20862 * 15 2 1 17 17 C 1.53002 * 110.41153 * 277.81658 * 15 2 1 18 18 C 1.52994 * 109.46881 * 180.19213 * 17 15 2 19 19 C 1.53001 * 117.49930 * 115.91682 * 18 17 15 20 20 C 1.53003 * 117.49479 * 184.57444 * 18 17 15 21 21 H 1.09000 * 109.47280 * 171.84232 * 1 2 3 22 22 H 1.09008 * 109.47502 * 291.84036 * 1 2 3 23 23 H 1.08997 * 109.47517 * 51.84222 * 1 2 3 24 24 H 1.08998 * 110.41458 * 82.17823 * 3 2 1 25 25 H 1.09000 * 110.50594 * 319.78371 * 3 2 1 26 26 H 1.09002 * 110.32455 * 264.95559 * 4 3 2 27 27 H 1.08996 * 110.32655 * 142.74445 * 4 3 2 28 28 H 0.96998 * 120.00002 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.46611 * 60.19227 * 17 15 2 30 30 H 1.08998 * 109.47035 * 300.19452 * 17 15 2 31 31 H 1.08998 * 115.55064 * 330.24084 * 18 17 15 32 32 H 1.08998 * 117.49857 * 215.00208 * 19 18 17 33 33 H 1.08998 * 117.49389 * 0.02562 * 19 18 17 34 34 H 1.09000 * 117.50142 * 359.97438 * 20 18 17 35 35 H 1.09000 * 117.49905 * 144.97710 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4432 1.2502 -0.5345 5 6 3.4433 -0.0539 -1.3584 6 1 4.1483 -0.7693 -0.9351 7 6 3.7903 0.2331 -2.7966 8 1 3.0136 0.5077 -3.4951 9 6 5.0992 0.1453 -3.2207 10 7 5.3998 0.3788 -4.4796 11 14 6.4460 -0.3054 -2.0071 12 1 6.6300 -1.7789 -1.9966 13 1 7.7161 0.3492 -2.4115 14 1 6.0624 0.1552 -0.6484 15 6 2.0013 -0.5954 -1.2526 16 1 1.4104 -0.2731 -2.1099 17 6 2.0105 -2.1223 -1.1559 18 6 2.5664 -2.7122 -2.4535 19 6 3.8781 -3.4952 -2.3685 20 6 2.5579 -4.2354 -2.5975 21 1 -0.3634 -1.0173 -0.1458 22 1 -0.3634 0.3823 0.9539 23 1 -0.3634 0.6349 -0.8080 24 1 2.0078 1.7918 1.0120 25 1 1.4104 2.0229 -0.6592 26 1 4.1483 1.1749 0.2934 27 1 3.6936 2.0996 -1.1700 28 1 6.3207 0.3173 -4.7778 29 1 0.9937 -2.4825 -0.9993 30 1 2.6377 -2.4295 -0.3190 31 1 2.3906 -2.1207 -3.3519 32 1 4.5653 -3.4188 -3.2111 33 1 4.3447 -3.5904 -1.3881 34 1 2.1567 -4.8172 -1.7677 35 1 2.3763 -4.6460 -3.5908 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261158531.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = 18.633857 kcal Electronic energy + Delta-G solvation = -14615.915368 eV Core-core repulsion = 12421.147857 eV Total energy + Delta-G solvation = -2194.767511 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.66710 -36.42495 -33.03001 -31.05635 -30.30186 -26.70922 -24.59528 -23.17050 -21.76701 -20.13968 -19.92506 -18.89197 -16.79467 -15.28106 -14.90331 -14.31057 -14.10255 -13.72616 -13.12554 -13.04035 -12.89734 -12.47450 -11.74236 -11.17724 -11.08662 -10.96805 -10.85368 -10.77501 -10.47965 -10.28824 -10.14027 -9.72617 -9.57887 -9.47657 -9.03386 -8.90351 -8.46930 -7.89681 -6.03963 -4.00925 3.32299 3.40957 3.45633 4.43279 4.47351 4.66839 5.24903 5.41266 5.51218 5.57104 5.60740 5.66933 5.81405 5.95872 6.02684 6.08941 6.11742 6.14371 6.25004 6.34650 6.41227 6.55019 6.56994 6.69365 6.74366 6.87702 6.98008 7.12272 7.16692 7.44591 7.46490 7.71090 7.89668 8.57204 8.99386 9.60706 11.09132 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.015963 C = 0.010998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.636623 B = 1753.650134 C = 2545.313307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.038 3.962 4 C -0.129 4.129 5 C 0.024 3.976 6 H 0.039 0.961 7 C -0.497 4.497 8 H 0.069 0.931 9 C 0.076 3.924 10 N -0.903 5.903 11 Si 0.869 3.131 12 H -0.274 1.274 13 H -0.293 1.293 14 H -0.263 1.263 15 C 0.074 3.926 16 H 0.050 0.950 17 C -0.064 4.064 18 C -0.121 4.121 19 C -0.170 4.170 20 C -0.199 4.199 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.022 0.978 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.068 0.932 28 H 0.262 0.738 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 -3.794 6.859 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.246 5.246 3 C -0.090 4.090 4 C -0.167 4.167 5 C 0.005 3.995 6 H 0.057 0.943 7 C -0.535 4.535 8 H 0.088 0.912 9 C -0.125 4.125 10 N -0.541 5.541 11 Si 0.696 3.304 12 H -0.200 1.200 13 H -0.219 1.219 14 H -0.187 1.187 15 C -0.033 4.033 16 H 0.068 0.932 17 C -0.102 4.102 18 C -0.139 4.139 19 C -0.207 4.207 20 C -0.236 4.236 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.041 0.959 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.752 -4.082 7.210 10.086 hybrid contribution 0.535 0.282 -0.184 0.632 sum -5.217 -3.799 7.026 9.540 Atomic orbital electron populations 1.22453 0.89763 1.01052 1.00068 1.65285 1.06641 1.15609 1.37081 1.23031 0.97191 0.89479 0.99299 1.22777 0.93510 1.01700 0.98745 1.19836 0.91542 0.92031 0.96121 0.94290 1.20925 0.94013 1.46169 0.92444 0.91250 1.24943 0.98377 0.94554 0.94642 1.69903 1.19005 1.50118 1.15121 0.86979 0.81569 0.79159 0.82664 1.19961 1.21936 1.18734 1.22782 0.98083 0.93509 0.88945 0.93238 1.20961 0.99216 0.94594 0.95384 1.22143 1.00054 0.91476 1.00248 1.22854 0.90998 1.04525 1.02351 1.22979 1.03066 0.95902 1.01677 0.91949 0.92316 0.95902 0.91874 0.94598 0.93626 0.91285 0.92848 0.93188 0.92168 0.86865 0.89147 0.89806 0.89828 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.50 60.06 0.57 0.81 16 2 N -0.52 -9.63 5.34 -230.34 -1.23 -10.86 16 3 C 0.04 0.70 6.49 -2.18 -0.01 0.68 16 4 C -0.13 -2.74 6.29 -25.35 -0.16 -2.90 16 5 C 0.02 0.56 1.63 -90.38 -0.15 0.41 16 6 H 0.04 0.94 5.46 -51.93 -0.28 0.65 16 7 C -0.50 -13.30 7.75 -34.44 -0.27 -13.56 16 8 H 0.07 2.04 7.87 -52.49 -0.41 1.63 16 9 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -26.94 13.96 55.43 0.77 -26.16 16 11 Si 0.87 21.38 26.94 -169.99 -4.58 16.80 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.26 -6.28 6.50 56.52 0.37 -5.91 16 15 C 0.07 1.51 1.87 -66.07 -0.12 1.38 16 16 H 0.05 1.07 7.59 -51.93 -0.39 0.68 16 17 C -0.06 -1.17 5.11 -26.73 -0.14 -1.31 16 18 C -0.12 -2.28 4.75 -90.62 -0.43 -2.71 16 19 C -0.17 -3.18 10.18 -26.69 -0.27 -3.45 16 20 C -0.20 -3.19 10.25 -26.69 -0.27 -3.46 16 21 H 0.06 0.88 7.29 -51.93 -0.38 0.50 16 22 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 23 H 0.02 0.34 7.93 -51.93 -0.41 -0.07 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.65 7.85 -51.93 -0.41 0.24 16 26 H 0.04 0.94 8.01 -51.93 -0.42 0.53 16 27 H 0.07 1.53 7.71 -51.93 -0.40 1.13 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.05 0.83 7.35 -51.93 -0.38 0.44 16 30 H 0.06 1.12 7.83 -51.93 -0.41 0.72 16 31 H 0.11 2.40 7.74 -51.93 -0.40 2.00 16 32 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 33 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 275.92 15.07 4.16 4.16 Total: -1.00 -28.26 275.92 -8.22 -36.49 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.99 Total: 1.66 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -1.35 Total: -22.08 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.46 Total: -37.02 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.58 Total: 16.80 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.26 -8.22 -36.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158531.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.119 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds