Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48567 * 111.00054 * 2 1 4 4 C 1.54379 * 104.59595 * 200.96198 * 3 2 1 5 5 C 1.54262 * 105.06141 * 23.84577 * 4 3 2 6 6 H 1.09001 * 110.32946 * 241.10660 * 5 4 3 7 7 C 1.50706 * 110.40914 * 118.93996 * 5 4 3 8 8 H 1.07999 * 119.99901 * 273.09646 * 7 5 4 9 9 C 1.37872 * 119.99767 * 93.09606 * 7 5 4 10 10 N 1.31515 * 120.00287 * 179.11614 * 9 7 5 11 11 Si 1.86805 * 120.00160 * 359.11512 * 9 7 5 12 12 H 1.48496 * 109.47246 * 90.84327 * 11 9 7 13 13 H 1.48500 * 109.47293 * 210.84810 * 11 9 7 14 14 H 1.48503 * 109.47170 * 330.84699 * 11 9 7 15 15 C 1.48561 * 111.00097 * 244.57852 * 2 1 3 16 16 H 1.08994 * 110.50930 * 40.20862 * 15 2 1 17 17 C 1.53002 * 110.41153 * 277.81658 * 15 2 1 18 18 C 1.52994 * 109.46881 * 180.19213 * 17 15 2 19 19 C 1.53001 * 117.49930 * 115.91682 * 18 17 15 20 20 C 1.53003 * 117.49479 * 184.57444 * 18 17 15 21 21 H 1.09000 * 109.47280 * 171.84232 * 1 2 3 22 22 H 1.09008 * 109.47502 * 291.84036 * 1 2 3 23 23 H 1.08997 * 109.47517 * 51.84222 * 1 2 3 24 24 H 1.08998 * 110.41458 * 82.17823 * 3 2 1 25 25 H 1.09000 * 110.50594 * 319.78371 * 3 2 1 26 26 H 1.09002 * 110.32455 * 264.95559 * 4 3 2 27 27 H 1.08996 * 110.32655 * 142.74445 * 4 3 2 28 28 H 0.96998 * 120.00002 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.46611 * 60.19227 * 17 15 2 30 30 H 1.08998 * 109.47035 * 300.19452 * 17 15 2 31 31 H 1.08998 * 115.55064 * 330.24084 * 18 17 15 32 32 H 1.08998 * 117.49857 * 215.00208 * 19 18 17 33 33 H 1.08998 * 117.49389 * 0.02562 * 19 18 17 34 34 H 1.09000 * 117.50142 * 359.97438 * 20 18 17 35 35 H 1.09000 * 117.49905 * 144.97710 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4432 1.2502 -0.5345 5 6 3.4433 -0.0539 -1.3584 6 1 4.1483 -0.7693 -0.9351 7 6 3.7903 0.2331 -2.7966 8 1 3.0136 0.5077 -3.4951 9 6 5.0992 0.1453 -3.2207 10 7 5.3998 0.3788 -4.4796 11 14 6.4460 -0.3054 -2.0071 12 1 6.6300 -1.7789 -1.9966 13 1 7.7161 0.3492 -2.4115 14 1 6.0624 0.1552 -0.6484 15 6 2.0013 -0.5954 -1.2526 16 1 1.4104 -0.2731 -2.1099 17 6 2.0105 -2.1223 -1.1559 18 6 2.5664 -2.7122 -2.4535 19 6 3.8781 -3.4952 -2.3685 20 6 2.5579 -4.2354 -2.5975 21 1 -0.3634 -1.0173 -0.1458 22 1 -0.3634 0.3823 0.9539 23 1 -0.3634 0.6349 -0.8080 24 1 2.0078 1.7918 1.0120 25 1 1.4104 2.0229 -0.6592 26 1 4.1483 1.1749 0.2934 27 1 3.6936 2.0996 -1.1700 28 1 6.3207 0.3173 -4.7778 29 1 0.9937 -2.4825 -0.9993 30 1 2.6377 -2.4295 -0.3190 31 1 2.3906 -2.1207 -3.3519 32 1 4.5653 -3.4188 -3.2111 33 1 4.3447 -3.5904 -1.3881 34 1 2.1567 -4.8172 -1.7677 35 1 2.3763 -4.6460 -3.5908 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261158531.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = 1.091086 kcal Electronic energy + Delta-G solvation = -14616.676080 eV Core-core repulsion = 12421.147857 eV Total energy + Delta-G solvation = -2195.528223 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.23758 -37.87074 -35.00201 -32.85695 -31.82449 -28.46927 -26.02048 -24.98069 -23.15192 -21.77852 -21.43922 -20.57904 -18.86213 -16.87649 -16.59686 -15.78459 -15.63095 -15.48784 -14.75480 -14.49083 -14.43759 -14.35702 -13.26636 -12.97561 -12.66388 -12.47822 -12.39736 -12.30134 -12.05777 -11.92777 -11.88034 -11.70023 -11.27536 -11.01050 -10.84550 -10.66226 -10.45848 -9.36931 -8.22862 -6.22131 1.35281 1.37774 1.47899 2.39491 3.00243 3.14419 3.22986 3.95533 4.00948 4.12548 4.19439 4.24288 4.37736 4.46857 4.59973 4.66941 4.74094 4.80417 4.82613 4.84875 5.01050 5.02551 5.09110 5.15734 5.25701 5.31598 5.36400 5.40115 5.60389 5.61209 5.71581 6.01892 6.27706 6.41258 6.80998 7.41827 8.94031 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.015963 C = 0.010998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.636623 B = 1753.650134 C = 2545.313307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.523 5.523 3 C 0.043 3.957 4 C -0.131 4.131 5 C 0.020 3.980 6 H 0.034 0.966 7 C -0.484 4.484 8 H 0.026 0.974 9 C 0.024 3.976 10 N -0.952 5.952 11 Si 0.924 3.076 12 H -0.264 1.264 13 H -0.295 1.295 14 H -0.247 1.247 15 C 0.080 3.920 16 H 0.026 0.974 17 C -0.054 4.054 18 C -0.141 4.141 19 C -0.189 4.189 20 C -0.161 4.161 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.019 0.981 24 H 0.092 0.908 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.261 0.739 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 -4.990 9.520 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.246 5.246 3 C -0.085 4.085 4 C -0.170 4.170 5 C 0.001 3.999 6 H 0.052 0.948 7 C -0.523 4.523 8 H 0.045 0.955 9 C -0.173 4.173 10 N -0.593 5.593 11 Si 0.749 3.251 12 H -0.189 1.189 13 H -0.222 1.222 14 H -0.170 1.170 15 C -0.028 4.028 16 H 0.044 0.956 17 C -0.092 4.092 18 C -0.160 4.160 19 C -0.226 4.226 20 C -0.198 4.198 21 H 0.093 0.907 22 H 0.102 0.898 23 H 0.038 0.962 24 H 0.110 0.890 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.131 0.869 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.724 -5.279 9.893 13.075 hybrid contribution 0.742 0.695 -1.076 1.481 sum -5.982 -4.583 8.817 11.598 Atomic orbital electron populations 1.22561 0.87408 1.02100 1.01350 1.65322 1.08856 1.15244 1.35201 1.23024 0.94915 0.89833 1.00714 1.22678 0.96131 0.99735 0.98463 1.19795 0.93433 0.93110 0.93597 0.94801 1.21039 0.92777 1.44557 0.93893 0.95547 1.25656 1.00708 0.94900 0.96039 1.70045 1.19432 1.52558 1.17273 0.86082 0.78532 0.79363 0.81154 1.18898 1.22216 1.17005 1.22591 0.95843 0.95111 0.89301 0.95630 1.20885 1.00623 0.92854 0.94827 1.22027 1.01055 0.93508 0.99384 1.22853 0.91467 1.06334 1.01911 1.23064 0.99669 0.93612 1.03407 0.90657 0.89802 0.96233 0.88959 0.94726 0.92664 0.93147 0.92960 0.90748 0.91807 0.90458 0.91412 0.89067 0.86921 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.39 9.50 127.69 1.21 1.60 16 2 N -0.52 -17.81 5.34 -882.67 -4.71 -22.52 16 3 C 0.04 1.48 6.49 86.45 0.56 2.04 16 4 C -0.13 -5.46 6.29 31.49 0.20 -5.26 16 5 C 0.02 0.93 1.63 -10.64 -0.02 0.91 16 6 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 7 C -0.48 -26.85 7.75 25.60 0.20 -26.65 16 8 H 0.03 1.65 7.87 -2.91 -0.02 1.63 16 9 C 0.02 1.35 5.47 84.65 0.46 1.81 16 10 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 11 Si 0.92 44.40 26.94 68.60 1.85 46.24 16 12 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 14 H -0.25 -11.10 6.50 99.48 0.65 -10.45 16 15 C 0.08 3.16 1.87 45.07 0.08 3.24 16 16 H 0.03 1.13 7.59 -2.39 -0.02 1.11 16 17 C -0.05 -1.88 5.11 30.59 0.16 -1.72 16 18 C -0.14 -5.24 4.75 -10.79 -0.05 -5.29 16 19 C -0.19 -6.89 10.18 30.62 0.31 -6.57 16 20 C -0.16 -4.73 10.25 30.62 0.31 -4.42 16 21 H 0.07 1.85 7.29 -2.39 -0.02 1.83 16 22 H 0.08 1.87 8.14 -2.38 -0.02 1.86 16 23 H 0.02 0.54 7.93 -2.39 -0.02 0.52 16 24 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.03 1.19 7.85 -2.39 -0.02 1.18 16 26 H 0.05 2.16 8.01 -2.39 -0.02 2.15 16 27 H 0.05 2.24 7.71 -2.39 -0.02 2.22 16 28 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 29 H 0.07 2.20 7.35 -2.39 -0.02 2.19 16 30 H 0.06 2.18 7.83 -2.39 -0.02 2.17 16 31 H 0.08 3.42 7.74 -2.39 -0.02 3.40 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.09 3.16 8.03 -2.39 -0.02 3.14 16 34 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -62.48 275.92 1.84 -60.64 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.97 Total: 14.81 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 3.43 Total: -40.31 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -4.41 Total: -81.38 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.85 Total: 46.24 kcal Total: -62.48 1.84 -60.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261158531.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.733 kcal (2) G-P(sol) polarization free energy of solvation -62.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds