Wall clock time and date at job start Mon Mar 30 2020 02:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47118 * 2 1 4 4 C 1.50697 * 109.47232 * 240.00317 * 2 1 3 5 5 H 1.08000 * 120.00123 * 356.49469 * 4 2 1 6 6 C 1.37877 * 120.00003 * 176.50114 * 4 2 1 7 7 N 1.31511 * 120.00273 * 2.42184 * 6 4 2 8 8 Si 1.86803 * 119.99961 * 182.42148 * 6 4 2 9 9 H 1.48494 * 109.47166 * 180.02562 * 8 6 4 10 10 H 1.48502 * 109.47235 * 299.99880 * 8 6 4 11 11 H 1.48497 * 109.47236 * 60.00042 * 8 6 4 12 12 N 1.46894 * 109.47333 * 119.99999 * 2 1 3 13 13 C 1.46898 * 111.00287 * 42.15273 * 12 2 1 14 14 C 1.52994 * 117.50379 * 141.32728 * 13 12 2 15 15 C 1.52987 * 60.00221 * 252.51185 * 14 13 12 16 16 C 1.46907 * 110.99968 * 278.19685 * 12 2 1 17 17 C 1.53773 * 113.61314 * 24.13134 * 16 12 2 18 18 C 1.53963 * 87.02017 * 220.04521 * 17 16 12 19 19 C 1.53774 * 113.61543 * 286.51910 * 16 12 2 20 20 H 1.08998 * 109.46855 * 170.86204 * 1 2 3 21 21 H 1.08999 * 109.47102 * 290.86195 * 1 2 3 22 22 H 1.09000 * 109.47069 * 50.86568 * 1 2 3 23 23 H 0.96996 * 119.99870 * 355.03311 * 7 6 4 24 24 H 1.09004 * 115.54823 * 287.04282 * 13 12 2 25 25 H 1.09005 * 117.49860 * 0.02562 * 14 13 12 26 26 H 1.09006 * 117.49785 * 145.01976 * 14 13 12 27 27 H 1.09007 * 117.50225 * 252.50733 * 15 14 13 28 28 H 1.09001 * 117.52098 * 107.48141 * 15 14 13 29 29 H 1.09003 * 112.84836 * 155.32067 * 16 12 2 30 30 H 1.09000 * 113.61737 * 334.55986 * 17 16 12 31 31 H 1.09002 * 113.61852 * 105.46564 * 17 16 12 32 32 H 1.08994 * 113.53286 * 270.81156 * 18 17 16 33 33 H 1.09002 * 113.73985 * 139.93799 * 18 17 16 34 34 H 1.09001 * 113.61515 * 254.52959 * 19 16 12 35 35 H 1.09002 * 113.61531 * 25.42984 * 19 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 1.3322 -1.1700 -1.9123 6 6 3.3858 -0.7735 -1.4857 7 7 4.2410 -0.2556 -0.6314 8 14 4.0049 -1.5949 -3.0451 9 1 5.4880 -1.5318 -3.0825 10 1 3.5697 -3.0146 -3.0630 11 1 3.4490 -0.8918 -4.2291 12 7 2.0197 -0.6925 1.1994 13 6 1.2367 -1.9072 1.4626 14 6 1.9918 -3.1396 1.9643 15 6 1.4534 -3.1027 0.5328 16 6 2.0109 0.2024 2.3644 17 6 1.0075 1.3614 2.2433 18 6 2.0848 2.2549 2.8847 19 6 3.1237 1.2632 2.3348 20 1 -0.3633 -1.0146 -0.1632 21 1 -0.3633 0.3660 0.9603 22 1 -0.3633 0.6486 -0.7971 23 1 3.9184 0.2337 0.1415 24 1 0.2293 -1.7433 1.8453 25 1 3.0696 -3.0490 2.0995 26 1 1.4812 -3.7868 2.6775 27 1 0.5886 -3.7256 0.3040 28 1 2.1766 -2.9878 -0.2746 29 1 1.9450 -0.3351 3.3104 30 1 0.7735 1.6306 1.2133 31 1 0.1185 1.2357 2.8613 32 1 2.0382 2.2795 3.9733 33 1 2.1520 3.2483 2.4412 34 1 3.9407 1.0584 3.0267 35 1 3.4694 1.5055 1.3299 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261159687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:07 Heat of formation + Delta-G solvation = 60.441793 kcal Electronic energy + Delta-G solvation = -15025.852947 eV Core-core repulsion = 12832.898364 eV Total energy + Delta-G solvation = -2192.954583 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.34894 -36.20857 -33.64473 -31.38575 -28.79197 -25.16689 -24.32172 -23.36660 -21.78874 -21.38804 -19.23253 -18.21008 -16.64617 -15.71232 -14.75994 -14.69891 -13.77468 -13.57619 -12.98286 -12.46424 -12.21548 -11.98234 -11.74158 -11.23890 -10.91866 -10.74875 -10.58092 -10.48340 -10.33373 -10.08086 -10.03899 -9.74736 -9.56672 -9.38679 -9.02629 -8.37948 -8.16602 -6.96739 -6.07831 -3.85668 3.51255 3.51565 3.70531 4.65046 4.74180 4.86858 5.26365 5.29725 5.49156 5.63056 5.67546 5.81715 5.92355 6.06508 6.12037 6.20730 6.29281 6.34103 6.35997 6.40020 6.47148 6.52213 6.63510 6.71094 6.85375 6.89189 6.98328 7.08350 7.30294 7.36298 8.15853 8.39825 8.64789 8.74514 9.14818 9.92418 11.31097 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028549 B = 0.013966 C = 0.011859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.545497 B = 2004.318822 C = 2360.528954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.199 3.801 3 H 0.033 0.967 4 C -0.590 4.590 5 H 0.044 0.956 6 C 0.036 3.964 7 N -0.897 5.897 8 Si 1.055 2.945 9 H -0.285 1.285 10 H -0.290 1.290 11 H -0.291 1.291 12 N -0.480 5.480 13 C 0.030 3.970 14 C -0.187 4.187 15 C -0.151 4.151 16 C 0.064 3.936 17 C -0.182 4.182 18 C -0.146 4.146 19 C -0.127 4.127 20 H 0.046 0.954 21 H 0.038 0.962 22 H 0.040 0.960 23 H 0.288 0.712 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 0.158 5.248 7.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.095 3.905 3 H 0.051 0.949 4 C -0.629 4.629 5 H 0.062 0.938 6 C -0.173 4.173 7 N -0.533 5.533 8 Si 0.884 3.116 9 H -0.210 1.210 10 H -0.217 1.217 11 H -0.218 1.218 12 N -0.202 5.202 13 C -0.079 4.079 14 C -0.225 4.225 15 C -0.188 4.188 16 C -0.045 4.045 17 C -0.221 4.221 18 C -0.184 4.184 19 C -0.165 4.165 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.869 -0.422 4.348 5.226 hybrid contribution -2.338 0.615 1.044 2.633 sum -5.207 0.193 5.392 7.498 Atomic orbital electron populations 1.22642 1.00785 1.00563 0.99042 1.19471 0.88302 0.94490 0.88265 0.94949 1.21725 0.94324 1.40744 1.06140 0.93758 1.25484 0.93317 0.96738 1.01729 1.70608 1.37671 1.31756 1.13303 0.83781 0.76181 0.76094 0.75513 1.21048 1.21679 1.21820 1.62565 1.51719 1.03979 1.01955 1.21890 0.94207 0.87722 1.04073 1.22964 1.00530 1.01229 0.97803 1.22941 1.02718 0.99093 0.94035 1.23072 0.94982 0.91495 0.94988 1.24043 0.96933 0.99100 1.01978 1.22793 0.98350 0.97909 0.99320 1.23077 0.96200 0.95300 1.01912 0.93512 0.94323 0.94107 0.89841 0.92056 0.88998 0.90690 0.90961 0.86390 0.90314 0.88143 0.93101 0.91294 0.92166 0.92412 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 7.10 37.16 0.26 -3.38 16 2 C 0.20 4.80 1.16 -68.87 -0.08 4.72 16 3 H 0.03 0.85 5.42 -51.93 -0.28 0.57 16 4 C -0.59 -15.95 6.35 -34.44 -0.22 -16.17 16 5 H 0.04 1.22 7.75 -52.49 -0.41 0.81 16 6 C 0.04 1.01 5.27 -17.82 -0.09 0.91 16 7 N -0.90 -26.35 13.50 55.43 0.75 -25.60 16 8 Si 1.05 25.02 29.90 -169.99 -5.08 19.94 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.48 -10.86 3.48 -211.26 -0.74 -11.60 16 13 C 0.03 0.63 3.29 -67.72 -0.22 0.41 16 14 C -0.19 -3.59 10.46 -26.74 -0.28 -3.87 16 15 C -0.15 -3.13 9.49 -26.74 -0.25 -3.39 16 16 C 0.06 1.28 3.94 -66.90 -0.26 1.01 16 17 C -0.18 -3.24 5.31 -25.83 -0.14 -3.37 16 18 C -0.15 -2.37 8.09 -25.82 -0.21 -2.58 16 19 C -0.13 -2.45 7.13 -25.92 -0.18 -2.63 16 20 H 0.05 1.00 7.14 -51.93 -0.37 0.63 16 21 H 0.04 0.74 5.31 -51.93 -0.28 0.46 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.29 8.17 4.01 -40.82 -0.16 8.00 16 24 H 0.06 1.23 7.55 -51.93 -0.39 0.83 16 25 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 28 H 0.12 2.87 6.64 -51.93 -0.34 2.52 16 29 H 0.08 1.48 7.96 -51.93 -0.41 1.07 16 30 H 0.10 1.96 4.33 -51.93 -0.22 1.73 16 31 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 2.09 5.38 -51.93 -0.28 1.81 16 LS Contribution 262.38 15.07 3.95 3.95 Total: -1.00 -28.33 262.38 -8.12 -36.46 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.33 Total: 5.19 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: -1.68 Total: -28.34 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.01 Total: -37.20 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.33 -8.12 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261159687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.898 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds