Wall clock time and date at job start Mon Mar 30 2020 02:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29820 * 118.35682 * 2 1 4 4 C 1.50314 * 122.89156 * 180.34871 * 3 2 1 5 5 H 1.08998 * 109.42812 * 103.59657 * 4 3 2 6 6 C 1.53004 * 109.42786 * 223.44572 * 4 3 2 7 7 C 1.53086 * 109.72019 * 343.53621 * 4 3 2 8 8 N 1.47241 * 108.46958 * 48.94888 * 7 4 3 9 9 C 1.46904 * 111.00009 * 167.80573 * 8 7 4 10 10 H 1.09007 * 109.46566 * 308.97650 * 9 8 7 11 11 C 1.52998 * 109.47027 * 68.97624 * 9 8 7 12 12 C 1.50701 * 109.47195 * 188.97974 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 9 8 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 9 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 9 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.46842 * 110.20596 * 291.19318 * 8 7 4 21 21 H 1.08997 * 109.47401 * 269.98416 * 1 2 3 22 22 H 1.08996 * 109.47103 * 29.98369 * 1 2 3 23 23 H 1.09001 * 109.47176 * 149.97914 * 1 2 3 24 24 H 1.08001 * 118.55531 * 0.36786 * 3 2 1 25 25 H 1.08999 * 109.46969 * 59.99866 * 6 4 3 26 26 H 1.08994 * 109.46578 * 179.97438 * 6 4 3 27 27 H 1.08997 * 109.47082 * 299.99786 * 6 4 3 28 28 H 1.08996 * 109.63877 * 289.25601 * 7 4 3 29 29 H 1.08997 * 109.63526 * 168.63970 * 7 4 3 30 30 H 1.09005 * 109.46870 * 300.00063 * 11 9 8 31 31 H 1.08998 * 109.47156 * 60.00002 * 11 9 8 32 32 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 33 33 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.33846 * 171.17750 * 20 8 7 35 35 H 1.08999 * 109.33690 * 290.84134 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1424 0.0000 4 6 3.6220 1.2613 -0.0077 5 1 3.9590 1.5337 -1.0078 6 6 4.0518 2.3430 0.9854 7 6 4.2484 -0.0767 0.3935 8 7 3.6207 -1.1434 -0.4041 9 6 4.3680 -2.4021 -0.2806 10 1 5.4235 -2.2192 -0.4822 11 6 4.2076 -2.9535 1.1375 12 6 3.8334 -3.4031 -1.2723 13 1 3.0196 -3.1314 -1.9283 14 6 4.3791 -4.6675 -1.3377 15 7 3.9089 -5.5429 -2.1994 16 14 5.7863 -5.1375 -0.2027 17 1 5.2390 -5.7086 1.0541 18 1 6.6461 -6.1466 -0.8718 19 1 6.5925 -3.9307 0.1120 20 6 2.2201 -1.3212 -0.0003 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.5340 2.0473 0.0061 25 1 3.7135 2.0729 1.9857 26 1 5.1383 2.4293 0.9807 27 1 3.6099 3.2968 0.6975 28 1 4.0727 -0.2603 1.4534 29 1 5.3199 -0.0535 0.1954 30 1 4.5944 -2.2294 1.8547 31 1 3.1521 -3.1363 1.3390 32 1 4.7625 -3.8872 1.2292 33 1 4.2930 -6.4323 -2.2457 34 1 1.7264 -1.9977 -0.6981 35 1 2.1848 -1.7480 1.0020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306170743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:17 Heat of formation + Delta-G solvation = 17.650714 kcal Electronic energy + Delta-G solvation = -14412.669896 eV Core-core repulsion = 12217.859752 eV Total energy + Delta-G solvation = -2194.810144 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.99956 -35.16508 -33.12614 -32.19703 -29.42321 -26.53360 -26.36411 -25.27622 -23.54730 -20.92341 -19.61824 -17.21568 -16.41035 -15.47653 -14.85668 -14.62708 -13.80707 -13.75192 -13.03465 -12.94172 -12.79645 -12.41365 -12.23806 -12.16172 -11.81113 -11.32922 -11.26986 -11.11463 -10.94045 -10.69060 -10.25960 -10.06706 -9.78912 -9.45858 -9.01371 -8.57273 -8.30659 -7.29732 -6.04972 -4.02842 2.64469 3.26116 3.36629 3.39033 4.40669 4.75438 5.02478 5.25353 5.26424 5.38134 5.62417 5.73048 5.73710 5.82338 5.85915 6.02381 6.05443 6.12432 6.19391 6.24229 6.27272 6.30406 6.46785 6.51278 6.54633 6.66727 6.83828 6.98542 7.19815 7.41119 7.65759 7.98965 8.10917 8.68637 9.03296 9.57350 11.08224 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039198 B = 0.009899 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.154193 B = 2827.978130 C = 3252.316498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.120 4.120 3 C -0.161 4.161 4 C -0.055 4.055 5 H 0.081 0.919 6 C -0.139 4.139 7 C 0.053 3.947 8 N -0.514 5.514 9 C 0.179 3.821 10 H 0.040 0.960 11 C -0.188 4.188 12 C -0.500 4.500 13 H 0.082 0.918 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.886 3.114 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.269 1.269 20 C 0.092 3.908 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.093 0.907 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 11.744 6.992 13.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.120 4.120 3 C -0.179 4.179 4 C -0.074 4.074 5 H 0.099 0.901 6 C -0.197 4.197 7 C -0.076 4.076 8 N -0.237 5.237 9 C 0.072 3.928 10 H 0.058 0.942 11 C -0.246 4.246 12 C -0.538 4.538 13 H 0.100 0.900 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.717 3.283 17 H -0.208 1.208 18 H -0.224 1.224 19 H -0.194 1.194 20 C -0.036 4.036 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.067 11.690 6.402 13.488 hybrid contribution 0.711 -0.692 1.494 1.794 sum -1.356 10.998 7.897 13.607 Atomic orbital electron populations 1.20854 0.92764 1.02282 1.01415 1.21259 0.95412 0.95642 0.99692 1.21895 0.95499 0.96556 1.03956 1.20040 0.92894 0.94901 0.99516 0.90111 1.21754 1.00800 0.98052 0.99120 1.22214 0.98497 0.91740 0.95166 1.62564 1.01256 1.07250 1.52594 1.19819 0.94533 0.86810 0.91659 0.94184 1.22841 1.01445 0.99915 1.00419 1.20938 1.19550 0.94962 1.18393 0.90036 1.24921 0.96537 0.96364 0.95436 1.69883 1.42197 1.05636 1.36163 0.86887 0.82910 0.78176 0.80316 1.20833 1.22424 1.19387 1.20894 0.89617 0.93437 0.99617 0.92146 0.92344 0.91657 0.88593 0.93048 0.92774 0.92890 0.95447 0.91380 0.95285 0.92412 0.93659 0.92672 0.88878 0.93981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.90 36.01 0.36 -1.21 16 2 C -0.12 -1.98 5.91 -101.01 -0.60 -2.58 16 3 C -0.16 -2.47 8.74 -35.88 -0.31 -2.79 16 4 C -0.05 -0.84 3.16 -91.91 -0.29 -1.13 16 5 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 6 C -0.14 -1.68 9.15 37.16 0.34 -1.34 16 7 C 0.05 0.94 4.37 -3.59 -0.02 0.92 16 8 N -0.51 -10.98 4.67 -229.51 -1.07 -12.05 16 9 C 0.18 4.31 1.91 -68.86 -0.13 4.18 16 10 H 0.04 1.00 7.00 -51.93 -0.36 0.64 16 11 C -0.19 -4.15 7.92 37.16 0.29 -3.85 16 12 C -0.50 -14.07 8.62 -34.44 -0.30 -14.37 16 13 H 0.08 2.51 7.34 -52.49 -0.39 2.13 16 14 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 15 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 16 Si 0.89 22.05 24.37 -169.99 -4.14 17.90 16 17 H -0.28 -6.83 6.86 56.52 0.39 -6.44 16 18 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 20 C 0.09 1.82 4.66 -5.28 -0.02 1.79 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.70 7.93 -51.93 -0.41 0.29 16 23 H 0.06 0.89 8.06 -51.93 -0.42 0.47 16 24 H 0.10 1.28 7.87 -52.49 -0.41 0.87 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.48 7.10 -51.93 -0.37 0.11 16 29 H 0.07 1.19 7.92 -51.93 -0.41 0.78 16 30 H 0.03 0.56 6.94 -51.93 -0.36 0.20 16 31 H 0.06 1.25 6.20 -51.93 -0.32 0.93 16 32 H 0.04 1.04 3.25 -51.93 -0.17 0.87 16 33 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 34 H 0.09 2.03 6.97 -51.93 -0.36 1.67 16 35 H 0.04 0.83 5.86 -51.93 -0.30 0.53 16 LS Contribution 264.75 15.07 3.99 3.99 Total: -1.00 -29.71 264.75 -6.81 -36.52 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.58 Total: -1.10 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.77 Total: -18.49 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -0.30 Total: -38.83 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.71 -6.81 -36.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306170743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.172 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds