Wall clock time and date at job start Mon Mar 30 2020 02:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29820 * 118.35682 * 2 1 4 4 C 1.50314 * 122.89156 * 180.34871 * 3 2 1 5 5 H 1.08998 * 109.42812 * 103.59657 * 4 3 2 6 6 C 1.53004 * 109.42786 * 223.44572 * 4 3 2 7 7 C 1.53086 * 109.72019 * 343.53621 * 4 3 2 8 8 N 1.47241 * 108.46958 * 48.94888 * 7 4 3 9 9 C 1.46904 * 111.00009 * 167.80573 * 8 7 4 10 10 H 1.09007 * 109.46566 * 308.97650 * 9 8 7 11 11 C 1.52998 * 109.47027 * 68.97624 * 9 8 7 12 12 C 1.50701 * 109.47195 * 188.97974 * 9 8 7 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 9 8 14 14 C 1.37871 * 119.99694 * 180.27796 * 12 9 8 15 15 N 1.31523 * 119.99908 * 179.72112 * 14 12 9 16 16 Si 1.86800 * 120.00405 * 359.71709 * 14 12 9 17 17 H 1.48500 * 109.47210 * 90.00069 * 16 14 12 18 18 H 1.48504 * 109.47424 * 210.00300 * 16 14 12 19 19 H 1.48502 * 109.46888 * 330.00390 * 16 14 12 20 20 C 1.46842 * 110.20596 * 291.19318 * 8 7 4 21 21 H 1.08997 * 109.47401 * 269.98416 * 1 2 3 22 22 H 1.08996 * 109.47103 * 29.98369 * 1 2 3 23 23 H 1.09001 * 109.47176 * 149.97914 * 1 2 3 24 24 H 1.08001 * 118.55531 * 0.36786 * 3 2 1 25 25 H 1.08999 * 109.46969 * 59.99866 * 6 4 3 26 26 H 1.08994 * 109.46578 * 179.97438 * 6 4 3 27 27 H 1.08997 * 109.47082 * 299.99786 * 6 4 3 28 28 H 1.08996 * 109.63877 * 289.25601 * 7 4 3 29 29 H 1.08997 * 109.63526 * 168.63970 * 7 4 3 30 30 H 1.09005 * 109.46870 * 300.00063 * 11 9 8 31 31 H 1.08998 * 109.47156 * 60.00002 * 11 9 8 32 32 H 1.09004 * 109.46783 * 180.02562 * 11 9 8 33 33 H 0.96995 * 120.00181 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.33846 * 171.17750 * 20 8 7 35 35 H 1.08999 * 109.33690 * 290.84134 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1424 0.0000 4 6 3.6220 1.2613 -0.0077 5 1 3.9590 1.5337 -1.0078 6 6 4.0518 2.3430 0.9854 7 6 4.2484 -0.0767 0.3935 8 7 3.6207 -1.1434 -0.4041 9 6 4.3680 -2.4021 -0.2806 10 1 5.4235 -2.2192 -0.4822 11 6 4.2076 -2.9535 1.1375 12 6 3.8334 -3.4031 -1.2723 13 1 3.0196 -3.1314 -1.9283 14 6 4.3791 -4.6675 -1.3377 15 7 3.9089 -5.5429 -2.1994 16 14 5.7863 -5.1375 -0.2027 17 1 5.2390 -5.7086 1.0541 18 1 6.6461 -6.1466 -0.8718 19 1 6.5925 -3.9307 0.1120 20 6 2.2201 -1.3212 -0.0003 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.5340 2.0473 0.0061 25 1 3.7135 2.0729 1.9857 26 1 5.1383 2.4293 0.9807 27 1 3.6099 3.2968 0.6975 28 1 4.0727 -0.2603 1.4534 29 1 5.3199 -0.0535 0.1954 30 1 4.5944 -2.2294 1.8547 31 1 3.1521 -3.1363 1.3390 32 1 4.7625 -3.8872 1.2292 33 1 4.2930 -6.4323 -2.2457 34 1 1.7264 -1.9977 -0.6981 35 1 2.1848 -1.7480 1.0020 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306170743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:17 Heat of formation + Delta-G solvation = -2.223505 kcal Electronic energy + Delta-G solvation = -14413.531706 eV Core-core repulsion = 12217.859752 eV Total energy + Delta-G solvation = -2195.671955 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47975 -36.78353 -34.39819 -34.18715 -31.18424 -27.76979 -27.59965 -27.26341 -25.20266 -22.15592 -21.44428 -18.90130 -18.20442 -17.12662 -16.50526 -16.13540 -15.41532 -15.25977 -14.57397 -14.36047 -14.34607 -14.05099 -13.66464 -13.33824 -13.20041 -13.01005 -12.75807 -12.55190 -12.36464 -12.21558 -12.02591 -11.64702 -11.46493 -11.13561 -10.99270 -10.76400 -9.57359 -8.94965 -8.28721 -6.31624 1.28107 1.34134 1.39873 1.44462 2.30767 3.04611 3.21463 3.81932 4.01433 4.17809 4.35782 4.39791 4.49874 4.51879 4.56202 4.63134 4.66541 4.78383 4.80591 4.84922 4.95090 4.98003 5.05548 5.14933 5.25445 5.30010 5.38925 5.44909 5.61387 5.70256 6.05970 6.14941 6.43912 6.70550 6.74333 7.33035 8.88341 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039198 B = 0.009899 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.154193 B = 2827.978130 C = 3252.316498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.144 4.144 3 C -0.149 4.149 4 C -0.057 4.057 5 H 0.075 0.925 6 C -0.131 4.131 7 C 0.051 3.949 8 N -0.534 5.534 9 C 0.182 3.818 10 H 0.035 0.965 11 C -0.180 4.180 12 C -0.503 4.503 13 H 0.035 0.965 14 C 0.011 3.989 15 N -0.949 5.949 16 Si 0.951 3.049 17 H -0.268 1.268 18 H -0.297 1.297 19 H -0.249 1.249 20 C 0.097 3.903 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.126 0.874 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.266 0.734 34 H 0.055 0.945 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 13.911 9.044 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.144 4.144 3 C -0.167 4.167 4 C -0.076 4.076 5 H 0.094 0.906 6 C -0.189 4.189 7 C -0.077 4.077 8 N -0.257 5.257 9 C 0.074 3.926 10 H 0.053 0.947 11 C -0.239 4.239 12 C -0.541 4.541 13 H 0.053 0.947 14 C -0.186 4.186 15 N -0.590 5.590 16 Si 0.778 3.222 17 H -0.194 1.194 18 H -0.224 1.224 19 H -0.173 1.173 20 C -0.030 4.030 21 H 0.095 0.905 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.144 0.856 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.312 13.889 8.467 16.319 hybrid contribution 0.421 -1.305 0.766 1.571 sum -0.891 12.584 9.234 15.634 Atomic orbital electron populations 1.20838 0.90668 1.02670 1.02579 1.21290 0.96957 0.94280 1.01895 1.22203 0.95830 0.97094 1.01591 1.20112 0.92793 0.94393 1.00283 0.90647 1.21690 1.01590 0.97491 0.98085 1.22344 0.98663 0.91752 0.94946 1.62453 1.01965 1.06900 1.54418 1.19614 0.94107 0.87263 0.91635 0.94711 1.22693 1.01421 1.00197 0.99580 1.21149 1.18142 0.96284 1.18524 0.94670 1.25786 0.99460 0.96234 0.97120 1.70040 1.44233 1.06265 1.38450 0.85823 0.79513 0.78440 0.78394 1.19422 1.22444 1.17302 1.20741 0.88982 0.95100 0.98204 0.90539 0.90368 0.92864 0.85612 0.92723 0.91842 0.90925 0.94828 0.91133 0.92255 0.92737 0.94307 0.92539 0.92691 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 9.90 71.24 0.71 -2.10 16 2 C -0.14 -4.59 5.91 -15.45 -0.09 -4.68 16 3 C -0.15 -4.16 8.74 26.74 0.23 -3.93 16 4 C -0.06 -1.59 3.16 -11.63 -0.04 -1.62 16 5 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 6 C -0.13 -2.63 9.15 71.98 0.66 -1.97 16 7 C 0.05 1.72 4.37 86.27 0.38 2.09 16 8 N -0.53 -22.82 4.67 -880.05 -4.11 -26.93 16 9 C 0.18 8.74 1.91 44.17 0.08 8.82 16 10 H 0.04 1.71 7.00 -2.38 -0.02 1.69 16 11 C -0.18 -7.69 7.92 71.98 0.57 -7.12 16 12 C -0.50 -29.35 8.62 25.60 0.22 -29.13 16 13 H 0.03 2.32 7.34 -2.91 -0.02 2.29 16 14 C 0.01 0.64 5.45 84.65 0.46 1.10 16 15 N -0.95 -60.19 13.96 21.45 0.30 -59.90 16 16 Si 0.95 45.41 24.37 68.60 1.67 47.08 16 17 H -0.27 -12.17 6.86 99.48 0.68 -11.49 16 18 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 19 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 20 C 0.10 3.91 4.66 85.39 0.40 4.31 16 21 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.08 1.66 7.93 -2.39 -0.02 1.64 16 23 H 0.05 1.45 8.06 -2.39 -0.02 1.43 16 24 H 0.13 2.80 7.87 -2.91 -0.02 2.78 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.03 1.09 7.10 -2.39 -0.02 1.07 16 29 H 0.07 2.31 7.92 -2.39 -0.02 2.30 16 30 H 0.06 2.15 6.94 -2.38 -0.02 2.13 16 31 H 0.05 2.33 6.20 -2.39 -0.01 2.31 16 32 H 0.04 1.69 3.25 -2.38 -0.01 1.69 16 33 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.05 2.57 6.97 -2.38 -0.02 2.55 16 35 H 0.04 1.56 5.86 -2.39 -0.01 1.55 16 Total: -1.00 -65.97 264.75 2.41 -63.55 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.97 Total: 10.42 kcal Atomic # 6 Polarization: -37.81 SS G_CDS: 3.58 Total: -34.23 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -3.81 Total: -86.83 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.67 Total: 47.08 kcal Total: -65.97 2.41 -63.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306170743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.331 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds