Wall clock time and date at job start Mon Mar 30 2020 02:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29822 * 118.35932 * 2 1 4 4 C 1.50304 * 122.89526 * 180.41660 * 3 2 1 5 5 H 1.08993 * 109.43084 * 103.55547 * 4 3 2 6 6 C 1.52996 * 109.43061 * 223.40675 * 4 3 2 7 7 C 1.53086 * 109.71781 * 343.47843 * 4 3 2 8 8 N 1.47239 * 108.47163 * 48.96029 * 7 4 3 9 9 C 1.46897 * 111.00367 * 167.80427 * 8 7 4 10 10 H 1.09004 * 109.46716 * 55.00621 * 9 8 7 11 11 C 1.52997 * 109.47504 * 295.00884 * 9 8 7 12 12 C 1.50697 * 109.47666 * 174.99988 * 9 8 7 13 13 H 1.08010 * 119.99592 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00551 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99658 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99929 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.46958 * 90.00667 * 16 14 12 18 18 H 1.48507 * 109.46915 * 210.00096 * 16 14 12 19 19 H 1.48491 * 109.47262 * 330.00324 * 16 14 12 20 20 C 1.46829 * 110.22237 * 291.21436 * 8 7 4 21 21 H 1.08994 * 109.47018 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46849 * 120.00254 * 1 2 3 23 23 H 1.09004 * 109.46948 * 239.99973 * 1 2 3 24 24 H 1.08006 * 118.55296 * 0.39527 * 3 2 1 25 25 H 1.09002 * 109.47258 * 180.25404 * 6 4 3 26 26 H 1.09001 * 109.46921 * 300.24525 * 6 4 3 27 27 H 1.09000 * 109.47413 * 60.25024 * 6 4 3 28 28 H 1.09003 * 109.64153 * 168.65902 * 7 4 3 29 29 H 1.09002 * 109.63925 * 289.27197 * 7 4 3 30 30 H 1.08994 * 109.47466 * 59.98998 * 11 9 8 31 31 H 1.08995 * 109.47417 * 180.02562 * 11 9 8 32 32 H 1.09004 * 109.46919 * 299.99612 * 11 9 8 33 33 H 0.96996 * 119.99770 * 179.97438 * 15 14 12 34 34 H 1.09007 * 109.33320 * 290.66471 * 20 8 7 35 35 H 1.08999 * 109.20686 * 171.07682 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1237 1.1424 0.0000 4 6 3.6220 1.2613 -0.0092 5 1 3.9580 1.5336 -1.0096 6 6 4.0528 2.3430 0.9833 7 6 4.2487 -0.0765 0.3920 8 7 3.6205 -1.1436 -0.4047 9 6 4.3679 -2.4022 -0.2814 10 1 4.4643 -2.6658 0.7719 11 6 5.7595 -2.2311 -0.8937 12 6 3.6307 -3.4975 -1.0078 13 1 2.7000 -3.2803 -1.5111 14 6 4.1446 -4.7768 -1.0308 15 7 5.2780 -5.0411 -0.4183 16 14 3.2309 -6.1343 -1.9318 17 1 3.6928 -6.1902 -3.3420 18 1 3.5011 -7.4362 -1.2704 19 1 1.7727 -5.8557 -1.8992 20 6 2.2202 -1.3213 -0.0004 21 1 -0.3633 1.0276 -0.0005 22 1 -0.3633 -0.5139 -0.8900 23 1 -0.3633 -0.5139 0.8900 24 1 1.5341 2.0473 0.0065 25 1 5.1391 2.4330 0.9739 26 1 3.6070 3.2960 0.6982 27 1 3.7194 2.0710 1.9848 28 1 5.3202 -0.0534 0.1932 29 1 4.0738 -0.2598 1.4522 30 1 6.2928 -1.4388 -0.3684 31 1 6.3139 -3.1651 -0.8027 32 1 5.6631 -1.9675 -1.9470 33 1 5.6393 -5.9411 -0.4342 34 1 2.1853 -1.7505 1.0010 35 1 1.7280 -1.9969 -0.7000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306170745.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:20 Heat of formation + Delta-G solvation = 8.040407 kcal Electronic energy + Delta-G solvation = -14315.058651 eV Core-core repulsion = 12119.831774 eV Total energy + Delta-G solvation = -2195.226878 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.72291 -34.86207 -33.05728 -32.18404 -28.87516 -26.64123 -26.40949 -24.65778 -23.29767 -20.82958 -19.48570 -16.98950 -16.28094 -15.61219 -14.50669 -14.38252 -13.79291 -13.63948 -12.99577 -12.79229 -12.41977 -12.22125 -12.12740 -11.68062 -11.48903 -11.18410 -11.01850 -10.98023 -10.65113 -10.44335 -10.13226 -10.07990 -9.99933 -9.47713 -8.78881 -8.43014 -8.24301 -7.12214 -6.00117 -4.04836 2.71632 3.31471 3.37698 3.40752 4.41600 4.95955 5.10606 5.31390 5.33997 5.46137 5.70156 5.79827 5.82473 5.91892 5.98277 6.10294 6.14215 6.25845 6.30689 6.42855 6.54167 6.62986 6.72534 6.90192 7.03070 7.10635 7.18943 7.46692 7.58643 7.76282 7.85111 8.23706 8.36745 8.63289 9.02039 9.60402 11.06772 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.037107 B = 0.009638 C = 0.007935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.385941 B = 2904.503593 C = 3527.651791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C -0.160 4.160 4 C -0.055 4.055 5 H 0.078 0.922 6 C -0.139 4.139 7 C 0.053 3.947 8 N -0.528 5.528 9 C 0.210 3.790 10 H -0.002 1.002 11 C -0.130 4.130 12 C -0.506 4.506 13 H 0.063 0.937 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.099 3.901 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.094 0.906 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.022 0.978 30 H 0.008 0.992 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.260 0.740 34 H 0.034 0.966 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 9.995 1.900 11.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.122 4.122 3 C -0.178 4.178 4 C -0.074 4.074 5 H 0.097 0.903 6 C -0.197 4.197 7 C -0.076 4.076 8 N -0.253 5.253 9 C 0.105 3.895 10 H 0.015 0.985 11 C -0.188 4.188 12 C -0.544 4.544 13 H 0.081 0.919 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.028 4.028 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.027 0.973 31 H 0.103 0.897 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.487 9.954 1.437 11.013 hybrid contribution -0.462 -1.021 0.370 1.180 sum -4.948 8.933 1.807 10.371 Atomic orbital electron populations 1.20861 0.92922 1.01459 1.01950 1.21304 0.95297 0.95887 0.99759 1.21942 0.95601 0.96379 1.03862 1.20044 0.92817 0.95181 0.99330 0.90341 1.21754 1.00799 0.97962 0.99195 1.22216 0.99070 0.91521 0.94774 1.62507 1.01160 1.08675 1.52944 1.19263 0.91035 0.84333 0.94909 0.98473 1.21807 0.97989 1.00442 0.98586 1.21192 1.07543 0.92551 1.33125 0.91866 1.24939 0.95080 0.98619 0.95580 1.69897 1.19207 1.20628 1.43486 0.86528 0.80081 0.81178 0.79804 1.20653 1.21333 1.19934 1.20728 0.90097 0.92896 0.99118 0.92684 0.91714 0.92081 0.88750 0.92773 0.93042 0.93039 0.90819 0.95981 0.97330 0.89683 0.94696 0.92999 0.94827 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.01 36.01 0.36 -1.23 16 2 C -0.12 -2.10 5.91 -101.00 -0.60 -2.70 16 3 C -0.16 -2.57 8.77 -35.89 -0.31 -2.89 16 4 C -0.06 -0.89 3.16 -91.92 -0.29 -1.18 16 5 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 6 C -0.14 -1.81 9.15 37.16 0.34 -1.47 16 7 C 0.05 1.02 4.76 -3.59 -0.02 1.01 16 8 N -0.53 -11.90 4.57 -229.53 -1.05 -12.95 16 9 C 0.21 5.45 2.04 -68.87 -0.14 5.31 16 10 H 0.00 -0.07 8.13 -51.93 -0.42 -0.49 16 11 C -0.13 -3.25 8.90 37.16 0.33 -2.92 16 12 C -0.51 -13.98 7.97 -34.44 -0.27 -14.25 16 13 H 0.06 1.74 6.14 -52.48 -0.32 1.42 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -25.65 11.32 55.43 0.63 -25.02 16 16 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.10 2.07 4.83 -5.28 -0.03 2.04 16 21 H 0.05 0.66 7.61 -51.93 -0.40 0.26 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 1.32 7.63 -52.48 -0.40 0.92 16 25 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.43 6.00 -51.93 -0.31 1.11 16 29 H 0.02 0.43 8.05 -51.93 -0.42 0.02 16 30 H 0.01 0.18 6.30 -51.93 -0.33 -0.15 16 31 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.03 0.73 8.12 -51.92 -0.42 0.31 16 35 H 0.09 1.98 6.24 -51.93 -0.32 1.66 16 LS Contribution 273.15 15.07 4.12 4.12 Total: -1.00 -28.53 273.15 -7.80 -36.33 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -5.75 Total: -2.15 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -0.72 Total: -16.74 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.42 Total: -37.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.53 -7.80 -36.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306170745.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.374 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds