Wall clock time and date at job start Mon Mar 30 2020 02:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47331 * 2 1 4 4 C 1.50706 * 109.47158 * 240.00371 * 2 1 3 5 5 H 1.07996 * 120.00231 * 240.00455 * 4 2 1 6 6 C 1.37886 * 119.99693 * 59.99821 * 4 2 1 7 7 N 1.31515 * 119.99933 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99777 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46984 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47029 * 120.00131 * 8 6 4 11 11 H 1.48497 * 109.47201 * 240.00246 * 8 6 4 12 12 N 1.46896 * 109.47294 * 120.00517 * 2 1 3 13 13 C 1.46739 * 110.99834 * 176.04457 * 12 2 1 14 14 C 1.53096 * 109.77761 * 124.51101 * 13 12 2 15 15 C 1.53216 * 109.07918 * 60.23053 * 14 13 12 16 16 C 1.54555 * 108.18165 * 301.51294 * 15 14 13 17 17 C 1.46727 * 110.99965 * 300.95093 * 12 2 1 18 18 C 1.53050 * 109.64621 * 295.57791 * 17 12 2 19 19 C 1.53158 * 109.14547 * 300.24991 * 18 17 12 20 20 H 1.09001 * 109.47308 * 59.99629 * 1 2 3 21 21 H 1.08994 * 109.46968 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46800 * 299.99734 * 1 2 3 23 23 H 0.97004 * 119.99398 * 179.97438 * 7 6 4 24 24 H 1.08992 * 109.42393 * 4.41373 * 13 12 2 25 25 H 1.09002 * 109.41875 * 244.59803 * 13 12 2 26 26 H 1.08997 * 109.65241 * 180.32770 * 14 13 12 27 27 H 1.09000 * 109.56836 * 62.03515 * 15 14 13 28 28 H 1.09003 * 109.56307 * 182.37954 * 15 14 13 29 29 H 1.09001 * 109.73073 * 240.10592 * 16 15 14 30 30 H 1.09005 * 109.14273 * 120.01676 * 16 15 14 31 31 H 1.08999 * 109.26623 * 55.49589 * 17 12 2 32 32 H 1.09003 * 109.52572 * 180.34298 * 18 17 12 33 33 H 1.09000 * 109.52347 * 60.15084 * 18 17 12 34 34 H 1.09000 * 109.56487 * 240.54657 * 19 18 17 35 35 H 1.09001 * 109.66237 * 120.26219 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1464 -2.2867 -3.6040 10 1 1.1659 -1.5863 -4.8163 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6926 1.1993 13 6 3.4835 -0.7945 1.1868 14 6 4.0564 -0.1817 2.4675 15 6 3.5053 -0.9435 3.6773 16 6 1.9629 -0.8505 3.6441 17 6 1.5308 -0.0406 2.4195 18 6 2.1087 1.3734 2.5143 19 6 3.6376 1.2898 2.5492 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7094 1.1621 -3.4844 24 1 3.8766 -0.2602 0.3220 25 1 3.7732 -1.8435 1.1261 26 1 5.1439 -0.2532 2.4535 27 1 3.8260 -1.9842 3.6303 28 1 3.8750 -0.4869 4.5954 29 1 1.6042 -0.3611 4.5496 30 1 1.5455 -1.8555 3.5821 31 1 0.4426 0.0141 2.3867 32 1 1.7492 1.8537 3.4244 33 1 1.7953 1.9540 1.6467 34 1 4.0057 1.7230 3.4792 35 1 4.0542 1.8355 1.7025 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306201000.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:50 Heat of formation + Delta-G solvation = -25.879608 kcal Electronic energy + Delta-G solvation = -14917.653770 eV Core-core repulsion = 12720.956010 eV Total energy + Delta-G solvation = -2196.697760 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.44210 -36.41879 -33.84008 -32.27102 -31.59449 -30.23691 -27.27837 -24.83111 -23.47812 -23.25947 -21.53907 -18.41459 -17.72530 -17.42423 -16.69328 -16.54022 -15.90663 -14.85702 -14.60624 -14.06194 -13.68954 -13.45517 -13.06875 -12.94185 -12.90502 -12.86698 -12.77824 -12.48542 -12.43440 -12.14408 -11.98608 -11.62894 -11.17502 -11.08167 -10.74647 -10.60387 -10.48512 -8.66615 -8.11084 -6.22011 1.38693 1.40425 1.52455 2.41525 3.16554 3.42301 3.78622 3.87720 3.96225 4.30618 4.46511 4.50072 4.53797 4.59830 4.67727 4.80584 4.82743 4.95242 5.01229 5.05138 5.09956 5.17040 5.24019 5.28449 5.34477 5.45066 5.46242 5.54852 5.57172 5.78618 5.88517 6.30143 6.52625 6.88612 6.96505 7.47080 8.94695 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.045391 B = 0.010320 C = 0.009639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.710617 B = 2712.537429 C = 2904.167651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.220 3.780 3 H -0.031 1.031 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.537 5.537 13 C 0.071 3.929 14 C -0.106 4.106 15 C -0.100 4.100 16 C -0.103 4.103 17 C 0.074 3.926 18 C -0.148 4.148 19 C -0.107 4.107 20 H 0.058 0.942 21 H 0.027 0.973 22 H 0.029 0.971 23 H 0.261 0.739 24 H 0.028 0.972 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 -1.014 11.718 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.113 3.887 3 H -0.014 1.014 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.261 5.261 13 C -0.057 4.057 14 C -0.125 4.125 15 C -0.138 4.138 16 C -0.141 4.141 17 C -0.035 4.035 18 C -0.187 4.187 19 C -0.145 4.145 20 H 0.076 0.924 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.105 0.895 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.990 -1.390 11.567 12.315 hybrid contribution 0.323 0.666 -1.455 1.632 sum 4.313 -0.723 10.113 11.018 Atomic orbital electron populations 1.21670 0.97858 0.98920 0.99520 1.19063 0.92147 0.90441 0.87066 1.01392 1.21464 1.30719 1.12017 0.91263 0.92919 1.25702 0.95497 0.95823 1.01838 1.70032 1.37965 1.24230 1.23855 0.85505 0.78144 0.78618 0.79364 1.19317 1.20525 1.20666 1.62089 1.09440 1.52457 1.02084 1.21931 0.88147 0.99219 0.96391 1.21524 1.00259 0.95193 0.95509 1.21779 0.94962 1.00058 0.96992 1.21799 0.96352 0.99857 0.96092 1.21695 0.98759 0.91933 0.91142 1.22122 0.96867 0.98499 1.01215 1.21528 0.95188 0.96138 1.01598 0.92367 0.95348 0.95233 0.93026 0.95361 0.92861 0.89740 0.91534 0.89993 0.89782 0.92150 0.91449 0.89947 0.94989 0.89525 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.21 8.71 71.98 0.63 -5.58 16 2 C 0.22 11.55 1.59 44.17 0.07 11.62 16 3 H -0.03 -1.83 6.48 -2.39 -0.02 -1.84 16 4 C -0.52 -29.42 7.54 25.60 0.19 -29.22 16 5 H 0.05 3.02 7.26 -2.91 -0.02 3.00 16 6 C 0.01 0.55 5.30 84.66 0.45 1.00 16 7 N -0.92 -54.30 11.32 21.45 0.24 -54.05 16 8 Si 0.96 44.89 29.54 68.60 2.03 46.92 16 9 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 12 N -0.54 -23.65 4.57 -850.75 -3.88 -27.54 16 13 C 0.07 2.88 4.78 86.37 0.41 3.29 16 14 C -0.11 -3.22 3.26 -10.62 -0.03 -3.26 16 15 C -0.10 -2.53 5.88 31.20 0.18 -2.35 16 16 C -0.10 -2.87 5.94 31.14 0.18 -2.69 16 17 C 0.07 2.66 2.63 44.98 0.12 2.78 16 18 C -0.15 -5.02 5.46 30.66 0.17 -4.86 16 19 C -0.11 -3.29 5.77 30.72 0.18 -3.11 16 20 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 21 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.03 1.33 6.29 -2.39 -0.02 1.31 16 23 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.03 1.31 6.84 -2.39 -0.02 1.30 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.07 2.55 6.03 -2.39 -0.01 2.54 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.03 1.30 6.55 -2.39 -0.02 1.28 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -62.03 258.86 1.98 -60.06 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.04 Total: 7.00 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 2.55 Total: -32.38 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.64 Total: -81.59 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -62.03 1.98 -60.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306201000.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.176 kcal (2) G-P(sol) polarization free energy of solvation -62.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds