Wall clock time and date at job start Mon Mar 30 2020 02:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46971 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46790 * 119.99973 * 8 6 4 11 11 H 1.48501 * 109.47046 * 239.99648 * 8 6 4 12 12 N 1.46902 * 109.46626 * 239.99653 * 2 1 3 13 13 C 1.47958 * 110.99508 * 180.81944 * 12 2 1 14 14 C 1.55133 * 104.95658 * 213.85063 * 13 12 2 15 15 C 1.53945 * 101.50367 * 35.80599 * 14 13 12 16 16 C 1.52521 * 115.76820 * 94.95687 * 15 14 13 17 17 C 1.54015 * 86.67931 * 93.30840 * 16 15 14 18 18 C 1.52501 * 115.78819 * 196.43479 * 15 14 13 19 19 C 1.47755 * 110.99980 * 60.00616 * 12 2 1 20 20 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 24 24 H 1.08998 * 110.34290 * 332.71872 * 13 12 2 25 25 H 1.08998 * 110.34017 * 94.98258 * 13 12 2 26 26 H 1.09003 * 111.01910 * 277.75066 * 14 13 12 27 27 H 1.09001 * 111.04960 * 153.87931 * 14 13 12 28 28 H 1.08997 * 113.67470 * 207.75692 * 16 15 14 29 29 H 1.09002 * 113.68098 * 338.86108 * 16 15 14 30 30 H 1.09000 * 113.57286 * 269.86299 * 17 16 15 31 31 H 1.09005 * 113.57230 * 139.08717 * 17 16 15 32 32 H 1.09000 * 113.67983 * 21.16026 * 18 15 14 33 33 H 1.09000 * 113.67897 * 152.25730 * 18 15 14 34 34 H 1.09000 * 109.97866 * 243.48642 * 19 12 2 35 35 H 1.09000 * 109.98506 * 4.74063 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.1485 -2.2856 3.6038 10 1 3.1474 -0.1857 4.8160 11 1 1.1679 -1.5864 4.8166 12 7 2.0196 -0.6926 -1.1994 13 6 3.4985 -0.7295 -1.2238 14 6 3.8768 -0.6312 -2.7251 15 6 2.7886 0.3205 -3.2542 16 6 3.1716 1.7954 -3.3180 17 6 3.5913 1.5312 -4.7761 18 6 2.6083 0.3456 -4.7683 19 6 1.5459 -0.0226 -2.4282 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 0.7082 1.1609 3.4843 24 1 3.9078 0.1178 -0.6737 25 1 3.8611 -1.6669 -0.8022 26 1 3.8129 -1.6058 -3.2090 27 1 4.8695 -0.1989 -2.8512 28 1 2.3227 2.4725 -3.2227 29 1 4.0026 2.0607 -2.6645 30 1 4.6341 1.2322 -4.8822 31 1 3.3071 2.3285 -5.4629 32 1 2.9908 -0.5435 -5.2696 33 1 1.5996 0.6111 -5.0847 34 1 0.8975 -0.6934 -2.9918 35 1 1.0056 0.8885 -2.1711 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306315165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:11 Heat of formation + Delta-G solvation = 18.701999 kcal Electronic energy + Delta-G solvation = -14451.240392 eV Core-core repulsion = 12256.475835 eV Total energy + Delta-G solvation = -2194.764557 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90633 -36.19617 -33.02353 -30.52248 -28.01332 -26.82871 -25.53833 -24.89731 -21.89273 -21.25239 -19.20643 -17.99953 -16.29870 -15.40731 -15.08033 -14.54997 -14.29768 -13.46791 -13.10073 -12.56025 -12.51492 -12.17157 -11.57007 -11.40393 -11.39976 -11.02391 -10.84060 -10.69530 -10.58335 -10.19840 -10.10404 -9.95143 -9.86787 -9.76408 -9.56087 -8.84403 -8.38654 -7.05638 -5.97081 -4.01099 3.31771 3.39424 3.44429 4.44664 4.77423 4.81121 4.84068 5.02333 5.24798 5.33930 5.53165 5.66620 5.79931 5.88791 5.97815 6.01729 6.04972 6.15573 6.27001 6.37721 6.53135 6.56849 6.69356 6.78550 6.82346 6.88819 7.13036 7.15949 7.57351 7.75857 7.89220 8.25078 8.40382 8.65741 9.06676 9.64025 11.09852 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053357 B = 0.008336 C = 0.007921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.639480 B = 3357.956720 C = 3533.915907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.208 3.792 3 H -0.002 1.002 4 C -0.500 4.500 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.526 5.526 13 C 0.063 3.937 14 C -0.109 4.109 15 C -0.100 4.100 16 C -0.128 4.128 17 C -0.139 4.139 18 C -0.126 4.126 19 C 0.057 3.943 20 H 0.033 0.967 21 H 0.084 0.916 22 H 0.007 0.993 23 H 0.259 0.741 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.950 0.549 -11.370 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.102 3.898 3 H 0.015 0.985 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.251 5.251 13 C -0.065 4.065 14 C -0.147 4.147 15 C -0.101 4.101 16 C -0.165 4.165 17 C -0.177 4.177 18 C -0.163 4.163 19 C -0.072 4.072 20 H 0.052 0.948 21 H 0.103 0.897 22 H 0.026 0.974 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.662 0.154 -11.177 11.763 hybrid contribution 0.518 0.450 0.938 1.162 sum 4.180 0.604 -10.239 11.076 Atomic orbital electron populations 1.21842 0.97855 0.99578 0.99802 1.19407 0.92283 0.91824 0.86323 0.98485 1.21193 1.30672 1.12145 0.89831 0.92037 1.24944 0.95301 0.95110 0.99017 1.69907 1.37166 1.23178 1.23195 0.86479 0.78587 0.79628 0.82956 1.19758 1.21197 1.21050 1.63797 1.07162 1.51872 1.02248 1.22779 0.89611 1.00892 0.93255 1.22446 0.96692 0.98312 0.97244 1.22207 0.97405 0.95452 0.95073 1.22789 1.01221 0.96152 0.96373 1.22872 0.99286 0.98376 0.97146 1.22714 0.99424 0.98316 0.95890 1.22595 0.95288 0.97388 0.91889 0.94791 0.89744 0.97420 0.93125 0.93855 0.91367 0.91228 0.91893 0.90265 0.91606 0.90589 0.92012 0.91674 0.90333 0.92011 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.84 37.16 0.33 -3.03 16 2 C 0.21 5.42 1.64 -68.86 -0.11 5.31 16 3 H 0.00 -0.07 8.10 -51.93 -0.42 -0.49 16 4 C -0.50 -14.05 8.07 -34.44 -0.28 -14.33 16 5 H 0.06 1.74 7.22 -52.49 -0.38 1.36 16 6 C 0.06 1.60 5.30 -17.81 -0.09 1.51 16 7 N -0.89 -25.98 11.32 55.43 0.63 -25.36 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.53 -11.81 5.03 -224.94 -1.13 -12.94 16 13 C 0.06 1.27 5.70 -2.11 -0.01 1.25 16 14 C -0.11 -1.74 6.24 -25.11 -0.16 -1.90 16 15 C -0.10 -1.58 0.94 -154.48 -0.14 -1.72 16 16 C -0.13 -1.87 7.31 -26.45 -0.19 -2.06 16 17 C -0.14 -1.67 7.95 -25.70 -0.20 -1.87 16 18 C -0.13 -1.61 7.39 -26.46 -0.20 -1.81 16 19 C 0.06 1.08 5.61 -3.30 -0.02 1.06 16 20 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 21 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 22 H 0.01 0.16 6.52 -51.93 -0.34 -0.18 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.04 0.94 7.76 -51.93 -0.40 0.54 16 25 H 0.07 1.39 7.90 -51.93 -0.41 0.98 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.06 0.90 8.06 -51.93 -0.42 0.48 16 28 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 29 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 35 H 0.05 1.00 6.13 -51.93 -0.32 0.69 16 LS Contribution 271.34 15.07 4.09 4.09 Total: -1.00 -28.88 271.34 -8.45 -37.33 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.93 Total: -2.20 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.08 Total: -17.59 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.50 Total: -38.30 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.88 -8.45 -37.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306315165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.030 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds