Wall clock time and date at job start Mon Mar 30 2020 02:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46570 * 2 1 4 4 C 1.50696 * 109.47233 * 239.99871 * 2 1 3 5 5 H 1.08003 * 120.00019 * 239.99511 * 4 2 1 6 6 C 1.37877 * 120.00144 * 59.99770 * 4 2 1 7 7 N 1.31504 * 120.00143 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99683 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47743 * 60.00201 * 8 6 4 10 10 H 1.48502 * 109.47088 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47612 * 299.99920 * 8 6 4 12 12 N 1.46895 * 109.47016 * 119.99531 * 2 1 3 13 13 C 1.46814 * 111.00000 * 295.00443 * 12 2 1 14 14 C 1.53266 * 109.44273 * 170.79665 * 13 12 2 15 15 C 1.53209 * 108.63338 * 55.58760 * 14 13 12 16 16 C 1.52744 * 117.83429 * 163.06904 * 15 14 13 17 17 C 1.52752 * 117.80314 * 94.06125 * 15 14 13 18 18 C 1.53216 * 114.74309 * 308.61835 * 15 14 13 19 19 C 1.46812 * 110.99991 * 170.32121 * 12 2 1 20 20 H 1.09004 * 109.47194 * 60.00491 * 1 2 3 21 21 H 1.09004 * 109.46570 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47347 * 300.00207 * 1 2 3 23 23 H 0.96998 * 120.00279 * 180.02562 * 7 6 4 24 24 H 1.08995 * 109.47700 * 50.80665 * 13 12 2 25 25 H 1.09007 * 109.47670 * 290.78555 * 13 12 2 26 26 H 1.09001 * 109.60587 * 175.32765 * 14 13 12 27 27 H 1.08998 * 109.60815 * 295.83803 * 14 13 12 28 28 H 1.08995 * 117.50320 * 359.70453 * 16 15 14 29 29 H 1.08994 * 117.50786 * 144.77306 * 16 15 14 30 30 H 1.09003 * 117.50755 * 215.27836 * 17 15 14 31 31 H 1.09003 * 117.50549 * 0.30781 * 17 15 14 32 32 H 1.08997 * 109.61375 * 171.12463 * 18 15 14 33 33 H 1.09001 * 109.61092 * 291.63898 * 18 15 14 34 34 H 1.09005 * 109.47547 * 69.21518 * 19 12 2 35 35 H 1.09000 * 109.48102 * 309.20094 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3226 -1.1197 -4.0078 9 1 1.8283 -2.5200 -4.0080 10 1 1.8280 -0.4195 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 7 2.0196 -0.6924 1.1995 13 6 1.6488 0.0389 2.4173 14 6 1.9701 -0.8196 3.6457 15 6 3.4504 -1.2114 3.5954 16 6 4.0971 -1.7218 4.8816 17 6 4.4464 -0.3307 4.3475 18 6 3.9046 -1.8332 2.2708 19 6 3.4688 -0.9148 1.1238 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 0.7090 1.1611 -3.4845 24 1 0.5817 0.2601 2.3976 25 1 2.2124 0.9706 2.4676 26 1 1.7735 -0.2481 4.5528 27 1 1.3532 -1.7181 3.6354 28 1 3.4713 -1.7764 5.7723 29 1 4.8538 -2.5009 4.7898 30 1 5.4330 -0.1947 3.9044 31 1 4.0504 0.5300 4.8865 32 1 4.9899 -1.9336 2.2669 33 1 3.4436 -2.8135 2.1498 34 1 3.9879 0.0403 1.2058 35 1 3.7157 -1.3819 0.1704 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306422987.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:20 Heat of formation + Delta-G solvation = 21.306407 kcal Electronic energy + Delta-G solvation = -14382.140487 eV Core-core repulsion = 12187.488866 eV Total energy + Delta-G solvation = -2194.651621 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.02576 -36.13925 -32.92568 -30.55079 -30.17439 -27.08681 -25.29414 -22.50993 -22.32823 -21.60558 -19.64815 -18.02386 -16.22386 -15.49176 -15.03608 -14.34395 -13.96890 -13.50115 -13.26620 -13.07194 -12.29373 -12.05434 -11.64568 -11.58738 -11.40291 -11.01766 -10.78719 -10.70351 -10.59241 -10.25429 -10.10587 -10.02760 -9.71716 -9.50966 -9.16766 -8.72406 -8.39089 -7.05697 -5.98915 -4.03555 3.33115 3.37476 3.40263 4.01256 4.42494 4.90192 4.97550 5.09713 5.23041 5.33561 5.36742 5.76726 5.79890 5.83541 6.00308 6.04199 6.14424 6.23452 6.27760 6.36488 6.47163 6.54129 6.63145 6.81188 6.83436 6.95181 7.12652 7.25728 7.59824 7.81437 7.85932 8.27210 8.39158 8.68567 9.03487 9.61414 11.07957 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.048891 B = 0.008559 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.562259 B = 3270.654798 C = 3644.430928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.212 3.788 3 H -0.004 1.004 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.534 5.534 13 C 0.056 3.944 14 C -0.075 4.075 15 C -0.111 4.111 16 C -0.182 4.182 17 C -0.179 4.179 18 C -0.079 4.079 19 C 0.066 3.934 20 H 0.083 0.917 21 H 0.034 0.966 22 H 0.007 0.993 23 H 0.261 0.739 24 H 0.071 0.929 25 H 0.019 0.981 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.017 0.983 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 -2.693 10.606 11.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.259 5.259 13 C -0.072 4.072 14 C -0.113 4.113 15 C -0.111 4.111 16 C -0.219 4.219 17 C -0.216 4.216 18 C -0.117 4.117 19 C -0.063 4.063 20 H 0.102 0.898 21 H 0.053 0.947 22 H 0.026 0.974 23 H 0.070 0.930 24 H 0.089 0.911 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.750 -3.016 10.464 11.518 hybrid contribution 0.718 0.446 -0.820 1.178 sum 4.468 -2.570 9.644 10.935 Atomic orbital electron populations 1.21811 0.97758 0.99567 0.99704 1.19192 0.92320 0.91965 0.85869 0.98607 1.21189 1.31105 1.12317 0.89921 0.91764 1.24934 0.95198 0.95064 0.98999 1.69883 1.36873 1.23001 1.23468 0.86604 0.79069 0.79791 0.82191 1.20211 1.21361 1.20363 1.61835 1.12177 1.49453 1.02479 1.22025 1.00311 0.94159 0.90736 1.21197 0.92877 0.99964 0.97252 1.21549 0.94436 1.02329 0.92832 1.22935 1.03786 0.97281 0.97938 1.22975 1.00277 0.93921 1.04472 1.21278 0.98720 0.99421 0.92242 1.21980 0.88895 0.97084 0.98300 0.89799 0.94729 0.97404 0.92955 0.91059 0.96321 0.92646 0.91129 0.89351 0.89280 0.89276 0.89373 0.92609 0.91190 0.96498 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.89 37.16 0.33 -2.92 16 2 C 0.21 5.47 2.08 -68.87 -0.14 5.33 16 3 H 0.00 -0.10 8.13 -51.93 -0.42 -0.53 16 4 C -0.51 -13.94 7.83 -34.44 -0.27 -14.21 16 5 H 0.06 1.74 6.02 -52.48 -0.32 1.43 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.53 -11.78 4.45 -227.85 -1.01 -12.79 16 13 C 0.06 1.07 5.35 -3.73 -0.02 1.05 16 14 C -0.08 -1.19 5.87 -26.49 -0.16 -1.34 16 15 C -0.11 -1.68 2.02 -154.55 -0.31 -1.99 16 16 C -0.18 -2.28 10.00 -26.84 -0.27 -2.55 16 17 C -0.18 -2.40 9.92 -26.83 -0.27 -2.66 16 18 C -0.08 -1.30 5.87 -26.48 -0.16 -1.46 16 19 C 0.07 1.34 5.22 -3.74 -0.02 1.32 16 20 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 21 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.01 0.16 6.34 -51.93 -0.33 -0.17 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.07 1.36 6.06 -51.93 -0.31 1.05 16 25 H 0.02 0.37 8.12 -51.92 -0.42 -0.06 16 26 H 0.05 0.76 8.08 -51.93 -0.42 0.35 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.09 1.98 5.60 -51.93 -0.29 1.69 16 LS Contribution 270.90 15.07 4.08 4.08 Total: -1.00 -28.17 270.90 -8.46 -36.64 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.76 Total: -1.34 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.37 Total: -17.89 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: -0.39 Total: -37.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.17 -8.46 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306422987.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.942 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds