Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 H 1.09005 * 109.35323 * 34.71905 * 13 12 2 15 15 C 1.52872 * 109.35821 * 275.00247 * 13 12 2 16 16 C 1.53306 * 108.58294 * 185.26642 * 15 13 12 17 17 C 1.52874 * 108.58692 * 74.44115 * 16 15 13 18 18 C 1.52075 * 110.51708 * 305.10852 * 17 16 15 19 19 H 1.08990 * 114.63684 * 165.62778 * 18 17 16 20 20 C 1.52310 * 119.83906 * 310.45579 * 18 17 16 21 21 C 1.52067 * 120.01589 * 21.70660 * 18 17 16 22 22 H 1.08995 * 117.25869 * 144.43720 * 21 18 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99706 * 38.96022 * 12 2 1 28 28 H 1.09000 * 109.62014 * 304.99342 * 15 13 12 29 29 H 1.08995 * 109.62218 * 65.53774 * 15 13 12 30 30 H 1.08993 * 109.61646 * 194.17227 * 16 15 13 31 31 H 1.08997 * 109.61695 * 314.52911 * 16 15 13 32 32 H 1.08993 * 109.26858 * 65.38488 * 17 16 15 33 33 H 1.09000 * 109.26027 * 184.84516 * 17 16 15 34 34 H 1.08999 * 117.53439 * 217.19058 * 20 18 17 35 35 H 1.08997 * 117.53593 * 2.43637 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.2598 0.9352 2.2862 15 6 3.4107 0.9789 2.3199 16 6 3.5153 1.8284 3.5918 17 6 3.8199 0.9046 4.7711 18 6 2.7804 -0.2015 4.8642 19 1 3.0571 -1.0316 5.5140 20 6 1.2981 0.1463 4.8231 21 6 1.9596 -0.5789 3.6409 22 1 1.7043 -1.6312 3.5163 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.4495 -1.4979 1.4101 28 1 4.2361 0.2678 2.2859 29 1 3.4456 1.6261 1.4436 30 1 4.3184 2.5567 3.4804 31 1 2.5722 2.3471 3.7639 32 1 4.8061 0.4609 4.6350 33 1 3.8115 1.4847 5.6938 34 1 0.6270 -0.4326 5.4576 35 1 1.0299 1.1937 4.6855 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306423137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = 7.704059 kcal Electronic energy + Delta-G solvation = -14192.928022 eV Core-core repulsion = 11997.686559 eV Total energy + Delta-G solvation = -2195.241463 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.39508 -35.55707 -32.76107 -32.28739 -29.60286 -26.79491 -25.09445 -23.51636 -22.33629 -20.75376 -19.83533 -18.16605 -16.43812 -15.70107 -14.75497 -14.40155 -14.04697 -13.80207 -13.21283 -12.91240 -12.42145 -12.28811 -11.74269 -11.50456 -11.19863 -10.92883 -10.80663 -10.78562 -10.59710 -10.50351 -10.14706 -9.98278 -9.83983 -9.47841 -9.35933 -8.89907 -8.31088 -7.13993 -5.93768 -3.96708 3.37275 3.40855 3.44525 3.97642 4.47165 4.81240 4.94543 5.02930 5.26419 5.37566 5.39205 5.53860 5.70619 5.73061 5.86643 5.92801 5.96784 6.06433 6.24074 6.33297 6.35225 6.43589 6.64664 6.74216 6.75997 6.88644 6.91404 7.17880 7.46721 7.79480 7.95287 8.35186 8.62723 8.70514 9.10677 9.68442 11.13303 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.052697 B = 0.007456 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.216759 B = 3754.261272 C = 3883.238321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.680 5.680 13 C 0.120 3.880 14 H 0.036 0.964 15 C -0.104 4.104 16 C -0.123 4.123 17 C -0.085 4.085 18 C -0.138 4.138 19 H 0.092 0.908 20 C -0.190 4.190 21 C -0.138 4.138 22 H 0.101 0.899 23 H 0.026 0.974 24 H 0.088 0.912 25 H 0.004 0.996 26 H 0.259 0.741 27 H 0.325 0.675 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 0.250 12.577 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.104 3.896 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.203 1.203 12 N -0.310 5.310 13 C 0.010 3.990 14 H 0.054 0.946 15 C -0.142 4.142 16 C -0.161 4.161 17 C -0.122 4.122 18 C -0.156 4.156 19 H 0.110 0.890 20 C -0.227 4.227 21 C -0.157 4.157 22 H 0.119 0.881 23 H 0.046 0.954 24 H 0.107 0.893 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.142 0.858 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.839 0.444 12.252 12.585 hybrid contribution -0.822 -0.380 -0.638 1.108 sum 2.017 0.064 11.614 11.789 Atomic orbital electron populations 1.22436 1.00895 0.99103 1.00378 1.19186 0.89411 0.94439 0.86582 0.94843 1.21143 1.30068 1.12367 0.89675 0.92046 1.24950 0.95396 0.95230 0.98994 1.69874 1.37388 1.23268 1.23347 0.86584 0.79170 0.79610 0.82134 1.20417 1.21497 1.20321 1.60873 1.58007 1.08786 1.03300 1.20897 0.96294 0.93532 0.88301 0.94572 1.21544 0.98112 0.98240 0.96290 1.21628 1.01214 0.97756 0.95474 1.20812 0.97691 0.95541 0.98140 1.21766 0.92424 1.00527 1.00925 0.88952 1.23122 0.95177 1.01314 1.03090 1.22519 1.03660 0.99448 0.90051 0.88070 0.95436 0.89345 0.97691 0.93084 0.85820 0.91303 0.91757 0.92087 0.92349 0.91626 0.92256 0.89463 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.92 37.16 0.33 -3.82 16 2 C 0.21 5.40 2.38 -68.87 -0.16 5.24 16 3 H 0.03 0.94 7.16 -51.93 -0.37 0.57 16 4 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.07 11.32 55.43 0.63 -25.44 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.68 -14.72 6.04 -101.18 -0.61 -15.34 16 13 C 0.12 2.21 2.25 -67.93 -0.15 2.06 16 14 H 0.04 0.72 7.01 -51.93 -0.36 0.36 16 15 C -0.10 -1.81 5.37 -26.64 -0.14 -1.95 16 16 C -0.12 -1.71 5.70 -26.64 -0.15 -1.86 16 17 C -0.08 -1.04 5.93 -27.27 -0.16 -1.20 16 18 C -0.14 -1.80 6.00 -91.92 -0.55 -2.35 16 19 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 20 C -0.19 -2.50 9.66 -26.74 -0.26 -2.76 16 21 C -0.14 -2.12 5.69 -90.90 -0.52 -2.64 16 22 H 0.10 1.54 7.66 -51.93 -0.40 1.14 16 23 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 25 H 0.00 0.09 7.43 -51.93 -0.39 -0.29 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.32 6.72 7.78 -39.29 -0.31 6.42 16 28 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 29 H 0.06 1.25 7.50 -51.93 -0.39 0.86 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.81 7.12 -51.93 -0.37 0.44 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.23 7.27 -51.93 -0.38 0.85 16 LS Contribution 272.27 15.07 4.10 4.10 Total: -1.00 -28.39 272.27 -8.84 -37.23 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.78 Total: 4.72 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -2.17 Total: -22.04 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.02 Total: -40.78 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.39 -8.84 -37.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306423137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.934 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds