Wall clock time and date at job start Mon Mar 30 2020 02:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46872 * 59.99743 * 8 6 4 10 10 H 1.48503 * 109.47008 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46914 * 299.99916 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46895 * 111.00561 * 275.00137 * 12 2 1 14 14 H 1.09005 * 109.35323 * 34.71905 * 13 12 2 15 15 C 1.52872 * 109.35821 * 275.00247 * 13 12 2 16 16 C 1.53306 * 108.58294 * 185.26642 * 15 13 12 17 17 C 1.52874 * 108.58692 * 74.44115 * 16 15 13 18 18 C 1.52075 * 110.51708 * 305.10852 * 17 16 15 19 19 H 1.08990 * 114.63684 * 165.62778 * 18 17 16 20 20 C 1.52310 * 119.83906 * 310.45579 * 18 17 16 21 21 C 1.52067 * 120.01589 * 21.70660 * 18 17 16 22 22 H 1.08995 * 117.25869 * 144.43720 * 21 18 17 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99706 * 38.96022 * 12 2 1 28 28 H 1.09000 * 109.62014 * 304.99342 * 15 13 12 29 29 H 1.08995 * 109.62218 * 65.53774 * 15 13 12 30 30 H 1.08993 * 109.61646 * 194.17227 * 16 15 13 31 31 H 1.08997 * 109.61695 * 314.52911 * 16 15 13 32 32 H 1.08993 * 109.26858 * 65.38488 * 17 16 15 33 33 H 1.09000 * 109.26027 * 184.84516 * 17 16 15 34 34 H 1.08999 * 117.53439 * 217.19058 * 20 18 17 35 35 H 1.08997 * 117.53593 * 2.43637 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0076 10 1 1.8261 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0080 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2226 2.3469 14 1 1.2598 0.9352 2.2862 15 6 3.4107 0.9789 2.3199 16 6 3.5153 1.8284 3.5918 17 6 3.8199 0.9046 4.7711 18 6 2.7804 -0.2015 4.8642 19 1 3.0571 -1.0316 5.5140 20 6 1.2981 0.1463 4.8231 21 6 1.9596 -0.5789 3.6409 22 1 1.7043 -1.6312 3.5163 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 1.4495 -1.4979 1.4101 28 1 4.2361 0.2678 2.2859 29 1 3.4456 1.6261 1.4436 30 1 4.3184 2.5567 3.4804 31 1 2.5722 2.3471 3.7639 32 1 4.8061 0.4609 4.6350 33 1 3.8115 1.4847 5.6938 34 1 0.6270 -0.4326 5.4576 35 1 1.0299 1.1937 4.6855 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306423137.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:20 Heat of formation + Delta-G solvation = -9.008485 kcal Electronic energy + Delta-G solvation = -14193.652732 eV Core-core repulsion = 11997.686559 eV Total energy + Delta-G solvation = -2195.966173 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.63220 -37.34961 -34.50789 -33.71125 -31.30815 -28.37449 -27.24323 -24.83766 -23.66308 -21.97330 -21.73568 -19.39823 -18.34050 -17.12356 -16.75924 -15.92130 -15.46528 -15.09598 -14.71759 -14.47332 -13.92028 -13.90090 -13.32379 -13.24375 -12.84486 -12.74526 -12.47737 -12.29480 -12.14792 -12.07743 -11.83795 -11.74588 -11.15526 -11.04504 -10.69801 -10.50506 -10.47542 -8.92764 -8.09535 -6.20975 1.42450 1.44560 1.52352 2.43880 2.88541 3.18361 3.50295 3.74229 3.92217 4.14100 4.20799 4.33895 4.43416 4.51104 4.52971 4.69416 4.75515 4.84761 4.91479 4.93269 5.06123 5.12214 5.17940 5.26103 5.31646 5.37921 5.44569 5.46604 5.53364 5.68808 5.84365 6.28884 6.68372 6.86963 6.96079 7.49174 8.96039 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.052697 B = 0.007456 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.216759 B = 3754.261272 C = 3883.238321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.219 3.781 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.122 3.878 14 H 0.016 0.984 15 C -0.102 4.102 16 C -0.116 4.116 17 C -0.084 4.084 18 C -0.124 4.124 19 H 0.113 0.887 20 C -0.177 4.177 21 C -0.164 4.164 22 H 0.102 0.898 23 H 0.032 0.968 24 H 0.062 0.938 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.330 0.670 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -0.395 14.094 14.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.110 3.890 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.313 5.313 13 C 0.012 3.988 14 H 0.034 0.966 15 C -0.141 4.141 16 C -0.154 4.154 17 C -0.121 4.121 18 C -0.143 4.143 19 H 0.131 0.869 20 C -0.215 4.215 21 C -0.182 4.182 22 H 0.120 0.880 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.351 -0.205 13.789 14.192 hybrid contribution -0.980 -0.148 -1.088 1.472 sum 2.371 -0.353 12.701 12.925 Atomic orbital electron populations 1.22240 1.00259 0.99148 0.99821 1.18910 0.89751 0.92616 0.87723 0.98290 1.21444 1.30430 1.12474 0.91138 0.92770 1.25743 0.95461 0.95895 1.01942 1.70007 1.38058 1.24335 1.24034 0.85565 0.78631 0.78705 0.78417 1.19571 1.20885 1.19923 1.60772 1.57660 1.09354 1.03516 1.20901 0.95941 0.93062 0.88875 0.96574 1.21508 0.97397 0.98004 0.97172 1.21587 1.01827 0.97814 0.94211 1.20858 0.97764 0.95239 0.98210 1.21929 0.92466 1.01076 0.98796 0.86908 1.23184 0.95929 1.01081 1.01262 1.22355 1.07299 0.99208 0.89375 0.88011 0.94921 0.91966 0.96050 0.92999 0.85267 0.92003 0.95068 0.90668 0.92432 0.90892 0.89617 0.87526 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.80 8.92 71.98 0.64 -7.15 16 2 C 0.22 11.52 2.38 44.17 0.11 11.63 16 3 H 0.00 -0.05 7.16 -2.39 -0.02 -0.07 16 4 C -0.52 -29.62 8.84 25.60 0.23 -29.40 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.43 5.30 84.66 0.45 0.88 16 7 N -0.92 -54.62 11.32 21.45 0.24 -54.38 16 8 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.68 -30.19 6.04 -474.03 -2.86 -33.05 16 13 C 0.12 4.54 2.25 44.78 0.10 4.65 16 14 H 0.02 0.67 7.01 -2.38 -0.02 0.65 16 15 C -0.10 -3.64 5.37 30.65 0.16 -3.47 16 16 C -0.12 -3.07 5.70 30.65 0.17 -2.89 16 17 C -0.08 -1.79 5.93 30.25 0.18 -1.61 16 18 C -0.12 -2.85 6.00 -11.63 -0.07 -2.92 16 19 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 20 C -0.18 -4.20 9.66 30.59 0.30 -3.90 16 21 C -0.16 -4.79 5.69 -10.98 -0.06 -4.85 16 22 H 0.10 2.96 7.66 -2.39 -0.02 2.94 16 23 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 24 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 25 H 0.02 0.95 7.43 -2.38 -0.02 0.93 16 26 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 27 H 0.33 13.76 7.78 -89.69 -0.70 13.06 16 28 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 29 H 0.03 1.27 7.50 -2.39 -0.02 1.25 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.53 7.12 -2.39 -0.02 1.51 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 2.17 7.27 -2.39 -0.02 2.16 16 Total: -1.00 -61.50 272.27 1.97 -59.53 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.36 Total: 20.01 kcal Atomic # 6 Polarization: -41.26 SS G_CDS: 2.21 Total: -39.05 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.62 Total: -87.43 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -61.50 1.97 -59.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306423137.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.524 kcal (2) G-P(sol) polarization free energy of solvation -61.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds