Wall clock time and date at job start Mon Mar 30 2020 02:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46903 * 109.46889 * 239.99675 * 2 1 3 13 13 C 1.46896 * 110.99628 * 85.00322 * 12 2 1 14 14 H 1.08997 * 109.27093 * 324.49734 * 13 12 2 15 15 C 1.52877 * 109.26942 * 83.97222 * 13 12 2 16 16 C 1.50969 * 109.82226 * 173.78361 * 15 13 12 17 17 C 1.52878 * 109.14008 * 286.65981 * 16 15 13 18 18 C 1.52708 * 110.15242 * 54.01420 * 17 16 15 19 19 H 1.08996 * 114.90857 * 127.84629 * 18 17 16 20 20 C 1.51364 * 115.51770 * 269.42857 * 18 17 16 21 21 C 1.52069 * 120.52547 * 338.52675 * 18 17 16 22 22 H 1.08994 * 115.92767 * 150.00487 * 21 18 17 23 23 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99455 * 208.95705 * 12 2 1 28 28 H 1.08996 * 109.61263 * 294.88605 * 15 13 12 29 29 H 1.09002 * 109.61470 * 55.42142 * 15 13 12 30 30 H 1.09003 * 109.75435 * 166.50959 * 16 15 13 31 31 H 1.08991 * 108.92386 * 46.31161 * 16 15 13 32 32 H 1.08998 * 109.35734 * 293.80577 * 17 16 15 33 33 H 1.08999 * 109.35578 * 174.22317 * 17 16 15 34 34 H 1.09005 * 117.05289 * 4.28636 * 20 18 17 35 35 H 1.08998 * 117.78427 * 219.50374 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3468 14 1 1.2513 0.9255 -2.2922 15 6 3.4003 0.9961 -2.3037 16 6 3.5474 1.8272 -3.5554 17 6 3.8712 0.9073 -4.7327 18 6 2.8246 -0.1996 -4.8389 19 1 2.3700 -0.3087 -5.8235 20 6 3.1355 -1.4668 -4.0716 21 6 1.9773 -0.5796 -3.6346 22 1 0.9788 -0.9572 -3.8545 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 0.7088 1.1615 3.4843 27 1 2.9173 -1.1206 -1.0286 28 1 3.4190 1.6381 -1.4230 29 1 4.2347 0.2956 -2.2669 30 1 4.3517 2.5511 -3.4245 31 1 2.6094 2.3487 -3.7456 32 1 4.8546 0.4616 -4.5831 33 1 3.8769 1.4888 -5.6546 34 1 4.0333 -1.4643 -3.4533 35 1 2.8912 -2.4189 -4.5426 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306423139.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:23 Heat of formation + Delta-G solvation = 5.916909 kcal Electronic energy + Delta-G solvation = -14243.103334 eV Core-core repulsion = 12047.784375 eV Total energy + Delta-G solvation = -2195.318960 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.56036 -35.46858 -32.93546 -32.29778 -29.56933 -26.75536 -25.19381 -23.76490 -22.12614 -20.81844 -19.45704 -18.26122 -16.53607 -15.86056 -14.85905 -14.34348 -13.95867 -13.67858 -13.16995 -13.07869 -12.63139 -12.28277 -11.79827 -11.22268 -11.16614 -11.03330 -10.80962 -10.68884 -10.59284 -10.30015 -10.08701 -10.04808 -9.96315 -9.47215 -9.35664 -8.78546 -8.44158 -7.14271 -5.99898 -4.05948 3.32362 3.36735 3.39663 4.08287 4.42878 4.88714 5.00122 5.09569 5.26855 5.31649 5.44469 5.52372 5.66498 5.80635 5.86611 5.96755 6.02149 6.08809 6.17447 6.36837 6.44066 6.46407 6.62117 6.66730 6.75637 6.94606 7.20094 7.29337 7.57759 7.81601 7.95087 8.31801 8.47055 8.74264 9.05973 9.59811 11.06397 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.049820 B = 0.007547 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.885851 B = 3709.042591 C = 3714.202925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.681 5.681 13 C 0.120 3.880 14 H 0.074 0.926 15 C -0.149 4.149 16 C -0.115 4.115 17 C -0.086 4.086 18 C -0.158 4.158 19 H 0.095 0.905 20 C -0.175 4.175 21 C -0.113 4.113 22 H 0.096 0.904 23 H 0.030 0.970 24 H 0.079 0.921 25 H 0.003 0.997 26 H 0.261 0.739 27 H 0.330 0.670 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 0.245 -11.660 12.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.556 4.556 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.310 5.310 13 C 0.010 3.990 14 H 0.092 0.908 15 C -0.188 4.188 16 C -0.153 4.153 17 C -0.123 4.123 18 C -0.176 4.176 19 H 0.113 0.887 20 C -0.212 4.212 21 C -0.132 4.132 22 H 0.114 0.886 23 H 0.050 0.950 24 H 0.098 0.902 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.383 0.103 -11.652 12.134 hybrid contribution 1.048 0.026 1.084 1.508 sum 4.432 0.129 -10.568 11.460 Atomic orbital electron populations 1.21731 0.98071 0.99276 0.99228 1.19091 0.92419 0.92421 0.85620 0.98074 1.21242 1.31373 1.12437 0.90550 0.92377 1.24914 0.95095 0.95005 0.98985 1.69893 1.36682 1.22891 1.23484 0.86601 0.79040 0.79815 0.82176 1.21321 1.20218 1.20392 1.60720 1.32107 1.32552 1.05651 1.20748 0.95688 0.92569 0.90044 0.90808 1.21927 0.99348 0.99722 0.97837 1.21116 1.01298 0.97733 0.95155 1.21041 0.97294 0.95781 0.98227 1.21878 1.02079 0.97370 0.96315 0.88726 1.22609 1.00746 0.94154 1.03686 1.21780 0.95641 1.01556 0.94242 0.88582 0.95045 0.90201 0.97768 0.92929 0.85246 0.91410 0.92512 0.92480 0.92017 0.92153 0.92254 0.89174 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.17 37.16 0.34 -2.82 16 2 C 0.21 5.40 2.41 -68.86 -0.17 5.24 16 3 H 0.00 0.04 7.08 -51.93 -0.37 -0.32 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.62 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.66 11.32 55.43 0.63 -25.03 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.68 -14.69 6.03 -101.52 -0.61 -15.30 16 13 C 0.12 2.20 2.39 -68.25 -0.16 2.03 16 14 H 0.07 1.46 7.09 -51.93 -0.37 1.09 16 15 C -0.15 -2.48 4.83 -27.81 -0.13 -2.62 16 16 C -0.11 -1.58 5.84 -27.81 -0.16 -1.74 16 17 C -0.09 -1.06 5.79 -26.94 -0.16 -1.21 16 18 C -0.16 -2.07 6.13 -92.07 -0.56 -2.63 16 19 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 20 C -0.17 -2.45 9.51 -27.91 -0.27 -2.71 16 21 C -0.11 -1.78 5.68 -91.92 -0.52 -2.30 16 22 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 25 H 0.00 0.08 7.41 -51.93 -0.38 -0.31 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.33 7.06 7.92 -39.29 -0.31 6.75 16 28 H 0.07 1.26 7.42 -51.93 -0.39 0.88 16 29 H 0.06 0.93 6.96 -51.93 -0.36 0.57 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.85 8.04 -51.93 -0.42 0.44 16 32 H 0.06 0.72 8.02 -51.93 -0.42 0.31 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.30 7.24 -51.93 -0.38 0.92 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 271.88 15.07 4.10 4.10 Total: -1.00 -27.92 271.88 -8.87 -36.78 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.78 Total: 4.78 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.18 Total: -21.77 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.02 Total: -40.33 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.92 -8.87 -36.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306423139.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.700 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds