Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46903 * 109.46889 * 239.99675 * 2 1 3 13 13 C 1.46896 * 110.99628 * 85.00322 * 12 2 1 14 14 H 1.08997 * 109.27093 * 324.49734 * 13 12 2 15 15 C 1.52877 * 109.26942 * 83.97222 * 13 12 2 16 16 C 1.50969 * 109.82226 * 173.78361 * 15 13 12 17 17 C 1.52878 * 109.14008 * 286.65981 * 16 15 13 18 18 C 1.52708 * 110.15242 * 54.01420 * 17 16 15 19 19 H 1.08996 * 114.90857 * 127.84629 * 18 17 16 20 20 C 1.51364 * 115.51770 * 269.42857 * 18 17 16 21 21 C 1.52069 * 120.52547 * 338.52675 * 18 17 16 22 22 H 1.08994 * 115.92767 * 150.00487 * 21 18 17 23 23 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 1.00902 * 110.99455 * 208.95705 * 12 2 1 28 28 H 1.08996 * 109.61263 * 294.88605 * 15 13 12 29 29 H 1.09002 * 109.61470 * 55.42142 * 15 13 12 30 30 H 1.09003 * 109.75435 * 166.50959 * 16 15 13 31 31 H 1.08991 * 108.92386 * 46.31161 * 16 15 13 32 32 H 1.08998 * 109.35734 * 293.80577 * 17 16 15 33 33 H 1.08999 * 109.35578 * 174.22317 * 17 16 15 34 34 H 1.09005 * 117.05289 * 4.28636 * 20 18 17 35 35 H 1.08998 * 117.78427 * 219.50374 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3468 14 1 1.2513 0.9255 -2.2922 15 6 3.4003 0.9961 -2.3037 16 6 3.5474 1.8272 -3.5554 17 6 3.8712 0.9073 -4.7327 18 6 2.8246 -0.1996 -4.8389 19 1 2.3700 -0.3087 -5.8235 20 6 3.1355 -1.4668 -4.0716 21 6 1.9773 -0.5796 -3.6346 22 1 0.9788 -0.9572 -3.8545 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 0.7088 1.1615 3.4843 27 1 2.9173 -1.1206 -1.0286 28 1 3.4190 1.6381 -1.4230 29 1 4.2347 0.2956 -2.2669 30 1 4.3517 2.5511 -3.4245 31 1 2.6094 2.3487 -3.7456 32 1 4.8546 0.4616 -4.5831 33 1 3.8769 1.4888 -5.6546 34 1 4.0333 -1.4643 -3.4533 35 1 2.8912 -2.4189 -4.5426 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306423139.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = -10.278599 kcal Electronic energy + Delta-G solvation = -14243.805624 eV Core-core repulsion = 12047.784375 eV Total energy + Delta-G solvation = -2196.021250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81879 -37.26239 -34.57473 -33.79885 -31.30306 -28.38396 -27.27228 -25.16541 -23.32516 -22.30042 -21.13212 -19.66048 -18.34893 -17.23948 -16.80662 -15.76259 -15.65887 -15.09092 -14.57356 -14.38060 -14.30832 -13.78764 -13.48209 -12.92473 -12.84081 -12.69087 -12.49133 -12.26038 -12.20149 -12.11340 -11.80358 -11.60705 -11.26207 -10.95647 -10.65838 -10.57410 -10.53927 -8.92928 -8.13293 -6.27423 1.41260 1.43381 1.51020 2.40853 2.91882 3.15130 3.65006 3.78967 3.86064 4.11911 4.24338 4.26532 4.37742 4.55472 4.69032 4.70955 4.81380 4.85728 4.98755 5.06420 5.08272 5.12834 5.20765 5.31116 5.32732 5.38945 5.44925 5.48329 5.53110 5.69551 5.87815 6.22503 6.51735 6.81526 7.03717 7.43049 8.92303 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.049820 B = 0.007547 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.885851 B = 3709.042591 C = 3714.202925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.218 3.782 3 H -0.030 1.030 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.271 1.271 12 N -0.680 5.680 13 C 0.121 3.879 14 H 0.051 0.949 15 C -0.143 4.143 16 C -0.111 4.111 17 C -0.085 4.085 18 C -0.136 4.136 19 H 0.117 0.883 20 C -0.170 4.170 21 C -0.138 4.138 22 H 0.091 0.909 23 H 0.026 0.974 24 H 0.056 0.944 25 H 0.018 0.982 26 H 0.262 0.738 27 H 0.330 0.670 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -0.387 -12.992 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 H -0.012 1.012 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.787 3.213 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.196 1.196 12 N -0.309 5.309 13 C 0.011 3.989 14 H 0.070 0.930 15 C -0.182 4.182 16 C -0.150 4.150 17 C -0.122 4.122 18 C -0.155 4.155 19 H 0.135 0.865 20 C -0.207 4.207 21 C -0.157 4.157 22 H 0.109 0.891 23 H 0.045 0.955 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.470 -0.531 -13.008 13.765 hybrid contribution 0.699 0.251 1.468 1.645 sum 5.169 -0.280 -11.540 12.647 Atomic orbital electron populations 1.21561 0.98121 0.98688 0.98805 1.18861 0.92344 0.90868 0.86936 1.01242 1.21573 1.31691 1.12655 0.91736 0.92429 1.25741 0.95181 0.95680 1.02038 1.70025 1.37481 1.24071 1.24199 0.85551 0.78723 0.78667 0.78324 1.20841 1.19663 1.19582 1.60668 1.32122 1.33032 1.05065 1.20738 0.95762 0.92276 0.90103 0.93024 1.21807 0.98423 0.99568 0.98418 1.21100 1.01822 0.97884 0.94145 1.21088 0.97236 0.95406 0.98445 1.22012 1.00638 0.96900 0.95917 0.86473 1.22671 0.99288 0.95243 1.03523 1.21597 0.96405 1.03443 0.94233 0.89095 0.95487 0.92476 0.96282 0.92846 0.85253 0.94435 0.92156 0.91001 0.92311 0.91352 0.89634 0.89657 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.90 9.17 71.98 0.66 -5.24 16 2 C 0.22 11.49 2.41 44.17 0.11 11.59 16 3 H -0.03 -1.73 7.08 -2.39 -0.02 -1.75 16 4 C -0.54 -30.30 8.59 25.60 0.22 -30.08 16 5 H 0.06 3.17 7.62 -2.91 -0.02 3.15 16 6 C 0.01 0.72 5.30 84.66 0.45 1.16 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.68 16 8 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 N -0.68 -29.87 6.03 -475.10 -2.86 -32.73 16 13 C 0.12 4.48 2.39 44.57 0.11 4.58 16 14 H 0.05 2.11 7.09 -2.39 -0.02 2.09 16 15 C -0.14 -4.77 4.83 29.89 0.14 -4.62 16 16 C -0.11 -2.86 5.84 29.89 0.17 -2.69 16 17 C -0.08 -1.78 5.79 30.46 0.18 -1.61 16 18 C -0.14 -3.14 6.13 -11.73 -0.07 -3.22 16 19 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 20 C -0.17 -4.36 9.51 29.83 0.28 -4.07 16 21 C -0.14 -4.17 5.68 -11.64 -0.07 -4.23 16 22 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 25 H 0.02 0.88 7.41 -2.38 -0.02 0.86 16 26 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 27 H 0.33 14.32 7.92 -89.69 -0.71 13.61 16 28 H 0.04 1.45 7.42 -2.39 -0.02 1.43 16 29 H 0.06 1.94 6.96 -2.39 -0.02 1.93 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.55 8.04 -2.39 -0.02 1.53 16 32 H 0.07 1.38 8.02 -2.39 -0.02 1.36 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 2.28 7.24 -2.38 -0.02 2.26 16 35 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -60.13 271.88 1.93 -58.20 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.35 Total: 20.48 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 2.18 Total: -38.42 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.62 Total: -86.41 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -60.13 1.93 -58.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306423139.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.917 kcal (2) G-P(sol) polarization free energy of solvation -60.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds