Wall clock time and date at job start Mon Mar 30 2020 02:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46760 * 2 1 4 4 C 1.50697 * 109.47177 * 120.00218 * 2 1 3 5 5 H 1.07998 * 120.00200 * 119.99914 * 4 2 1 6 6 C 1.37884 * 119.99685 * 300.00008 * 4 2 1 7 7 N 1.31514 * 119.99927 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99634 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46931 * 180.02562 * 8 6 4 10 10 H 1.48493 * 109.47329 * 300.00009 * 8 6 4 11 11 H 1.48496 * 109.47279 * 60.00309 * 8 6 4 12 12 N 1.46896 * 109.47109 * 240.00215 * 2 1 3 13 13 C 1.46899 * 111.00290 * 86.10881 * 12 2 1 14 14 H 1.09005 * 109.35350 * 325.37460 * 13 12 2 15 15 C 1.52884 * 109.35821 * 205.66155 * 13 12 2 16 16 C 1.53302 * 108.57853 * 185.26611 * 15 13 12 17 17 C 1.52864 * 108.59291 * 74.44273 * 16 15 13 18 18 C 1.52079 * 110.51202 * 305.10531 * 17 16 15 19 19 H 1.09001 * 114.63761 * 165.62607 * 18 17 16 20 20 C 1.52300 * 119.84277 * 310.45077 * 18 17 16 21 21 C 1.52066 * 120.02126 * 21.70563 * 18 17 16 22 22 H 1.08993 * 117.25752 * 144.43286 * 21 18 17 23 23 H 1.09001 * 109.46758 * 185.69356 * 1 2 3 24 24 H 1.08997 * 109.47589 * 305.69804 * 1 2 3 25 25 H 1.08997 * 109.47038 * 65.70329 * 1 2 3 26 26 H 0.97001 * 119.99505 * 179.97438 * 7 6 4 27 27 H 1.00904 * 111.00062 * 210.05897 * 12 2 1 28 28 H 1.09002 * 109.61303 * 304.99314 * 15 13 12 29 29 H 1.08998 * 109.61779 * 65.53604 * 15 13 12 30 30 H 1.09006 * 109.61123 * 194.17358 * 16 15 13 31 31 H 1.09002 * 109.61655 * 314.52785 * 16 15 13 32 32 H 1.08999 * 109.27347 * 65.37195 * 17 16 15 33 33 H 1.08998 * 109.26862 * 184.84166 * 17 16 15 34 34 H 1.09001 * 117.53824 * 217.19906 * 20 18 17 35 35 H 1.09001 * 117.53625 * 2.44081 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6033 8 14 2.3213 -1.1204 4.0079 9 1 1.8259 -0.4207 5.2204 10 1 1.8258 -2.5202 4.0076 11 1 3.8063 -1.1210 4.0082 12 7 2.0197 -0.6924 -1.1994 13 6 2.1074 0.2288 -2.3403 14 1 1.2966 0.9549 -2.2814 15 6 1.9846 -0.5634 -3.6420 16 6 2.2102 0.3927 -4.8189 17 6 3.7019 0.7153 -4.9058 18 6 4.2080 1.2575 -3.5782 19 1 5.2934 1.2790 -3.4803 20 6 3.4546 2.3836 -2.8827 21 6 3.4454 0.9637 -2.2958 22 1 4.0319 0.8121 -1.3898 23 1 -0.3633 -1.0226 0.1020 24 1 -0.3634 0.5996 0.8345 25 1 -0.3633 0.4228 -0.9366 26 1 0.7081 1.1608 3.4844 27 1 2.9089 -1.1357 -1.0234 28 1 2.7361 -1.3526 -3.6624 29 1 0.9886 -1.0009 -3.7116 30 1 1.8839 -0.0825 -5.7441 31 1 1.6434 1.3100 -4.6590 32 1 4.2520 -0.1915 -5.1571 33 1 3.8639 1.4609 -5.6841 34 1 4.0443 3.1395 -2.3641 35 1 2.5378 2.7412 -3.3514 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306423140.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:25 Heat of formation + Delta-G solvation = 5.466855 kcal Electronic energy + Delta-G solvation = -14228.828555 eV Core-core repulsion = 12033.490080 eV Total energy + Delta-G solvation = -2195.338476 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.38715 -35.37639 -32.84195 -32.28708 -29.60858 -26.91831 -25.12068 -23.45378 -22.11317 -20.83336 -19.64295 -18.23441 -16.60733 -15.67897 -14.88757 -14.20307 -14.01010 -13.74734 -13.24590 -13.00778 -12.47448 -12.26054 -11.84493 -11.32863 -11.04594 -10.99551 -10.81726 -10.70712 -10.63055 -10.43002 -10.12267 -10.03953 -9.87768 -9.57785 -9.18171 -8.77639 -8.44791 -7.18685 -5.99612 -4.05385 3.32400 3.36797 3.39653 4.06325 4.42342 4.88412 4.99866 5.05737 5.28925 5.32477 5.41154 5.51176 5.64554 5.75269 5.88485 5.97342 6.04335 6.07876 6.25122 6.27393 6.37347 6.44865 6.61268 6.72098 6.79425 6.94789 7.19286 7.30356 7.59108 7.82232 7.95720 8.29841 8.46644 8.74345 9.06577 9.60252 11.07088 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.049265 B = 0.007742 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.222726 B = 3615.816687 C = 3743.329462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.683 5.683 13 C 0.120 3.880 14 H 0.071 0.929 15 C -0.104 4.104 16 C -0.122 4.122 17 C -0.084 4.084 18 C -0.145 4.145 19 H 0.090 0.910 20 C -0.184 4.184 21 C -0.164 4.164 22 H 0.102 0.898 23 H 0.031 0.969 24 H 0.075 0.925 25 H 0.004 0.996 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 0.910 -11.752 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.312 5.312 13 C 0.009 3.991 14 H 0.089 0.911 15 C -0.142 4.142 16 C -0.160 4.160 17 C -0.121 4.121 18 C -0.163 4.163 19 H 0.108 0.892 20 C -0.221 4.221 21 C -0.184 4.184 22 H 0.120 0.880 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.023 0.977 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.184 0.787 -11.747 12.197 hybrid contribution 1.173 0.234 1.263 1.740 sum 4.357 1.020 -10.485 11.400 Atomic orbital electron populations 1.21702 0.98056 0.99927 0.98307 1.19090 0.92392 0.92548 0.85578 0.97888 1.21257 1.31506 1.12449 0.90607 0.92379 1.24915 0.95074 0.94986 0.98977 1.69906 1.36613 1.22894 1.23466 0.86610 0.79030 0.79825 0.82208 1.21324 1.20214 1.20400 1.60825 1.32694 1.31332 1.06395 1.21076 0.92801 0.93163 0.92064 0.91117 1.21538 1.01764 0.97594 0.93307 1.21614 0.95910 0.99937 0.98557 1.20800 0.96171 1.00088 0.95032 1.21778 0.97697 1.03149 0.93699 0.89152 1.23031 1.02467 0.91980 1.04667 1.23357 1.00370 0.98157 0.96482 0.87998 0.94987 0.90581 0.97723 0.92947 0.85108 0.92044 0.91720 0.92186 0.92123 0.91833 0.92256 0.89543 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.12 37.16 0.34 -2.76 16 2 C 0.21 5.42 2.40 -68.87 -0.17 5.26 16 3 H 0.00 0.10 7.63 -51.93 -0.40 -0.30 16 4 C -0.52 -14.42 8.59 -34.44 -0.30 -14.72 16 5 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.77 11.38 55.43 0.63 -25.14 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.68 -14.79 6.02 -101.18 -0.61 -15.40 16 13 C 0.12 2.20 2.20 -67.92 -0.15 2.05 16 14 H 0.07 1.41 7.08 -51.93 -0.37 1.04 16 15 C -0.10 -1.60 5.53 -26.63 -0.15 -1.74 16 16 C -0.12 -1.56 5.70 -26.65 -0.15 -1.71 16 17 C -0.08 -1.01 5.93 -27.27 -0.16 -1.17 16 18 C -0.14 -2.02 6.00 -91.92 -0.55 -2.57 16 19 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.18 -2.77 9.66 -26.75 -0.26 -3.03 16 21 C -0.16 -2.79 5.28 -90.91 -0.48 -3.27 16 22 H 0.10 1.93 7.99 -51.93 -0.41 1.52 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.08 2.09 6.24 -51.93 -0.32 1.76 16 25 H 0.00 0.09 7.46 -51.93 -0.39 -0.30 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.33 7.08 7.86 -39.29 -0.31 6.78 16 28 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.79 7.12 -51.93 -0.37 0.42 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.33 7.27 -51.93 -0.38 0.95 16 LS Contribution 273.57 15.07 4.12 4.12 Total: -1.00 -28.16 273.57 -8.85 -37.01 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.86 Total: 4.93 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -2.12 Total: -22.01 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.02 Total: -40.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.16 -8.85 -37.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306423140.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.476 kcal (2) G-P(sol) polarization free energy of solvation -28.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds