Wall clock time and date at job start Mon Mar 30 2020 02:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47247 * 2 1 4 4 C 1.50704 * 109.47242 * 240.00449 * 2 1 3 5 5 H 1.08004 * 119.99944 * 245.39417 * 4 2 1 6 6 C 1.37873 * 120.00036 * 65.38391 * 4 2 1 7 7 N 1.31512 * 120.00315 * 355.41132 * 6 4 2 8 8 Si 1.86802 * 119.99911 * 175.40325 * 6 4 2 9 9 H 1.48500 * 109.47293 * 95.00309 * 8 6 4 10 10 H 1.48500 * 109.47312 * 215.00373 * 8 6 4 11 11 H 1.48497 * 109.46974 * 335.00392 * 8 6 4 12 12 N 1.46897 * 109.47294 * 120.00328 * 2 1 3 13 13 C 1.46785 * 110.46071 * 199.35792 * 12 2 1 14 14 C 1.53331 * 85.79445 * 139.10116 * 13 12 2 15 15 H 1.09002 * 111.42462 * 85.80384 * 14 13 12 16 16 C 1.50409 * 115.80510 * 214.30437 * 14 13 12 17 17 C 1.51622 * 114.38292 * 70.23544 * 16 14 13 18 18 C 1.50675 * 112.08561 * 45.38776 * 17 16 14 19 19 C 1.52972 * 109.15275 * 297.08184 * 18 17 16 20 20 C 1.48610 * 110.99990 * 297.76416 * 12 2 1 21 21 H 1.09001 * 115.06509 * 106.44817 * 20 12 2 22 22 H 1.08994 * 109.46929 * 184.83455 * 1 2 3 23 23 H 1.09001 * 109.46801 * 304.83282 * 1 2 3 24 24 H 1.09004 * 109.47131 * 64.83464 * 1 2 3 25 25 H 0.96996 * 120.00544 * 179.97438 * 7 6 4 26 26 H 1.08992 * 113.96491 * 24.77983 * 13 12 2 27 27 H 1.09009 * 113.44532 * 253.34985 * 13 12 2 28 28 H 1.09000 * 108.47220 * 191.45588 * 16 14 13 29 29 H 1.08992 * 108.47636 * 309.01315 * 16 14 13 30 30 H 1.09009 * 109.16797 * 167.01718 * 17 16 14 31 31 H 1.08993 * 109.17617 * 286.23163 * 17 16 14 32 32 H 1.08998 * 109.84493 * 176.89950 * 18 17 16 33 33 H 1.09007 * 109.05008 * 56.78320 * 18 17 16 34 34 H 1.09000 * 109.50583 * 303.25596 * 19 18 17 35 35 H 1.09001 * 109.50521 * 183.13487 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5796 -1.6365 -1.1339 6 6 1.7933 -0.1780 -2.4797 7 7 1.0505 0.9001 -2.6039 8 14 2.5246 -0.9881 -3.9957 9 1 1.5290 -1.9157 -4.5903 10 1 2.8845 0.0550 -4.9895 11 1 3.7418 -1.7477 -3.6126 12 7 2.0197 -0.6925 1.1994 13 6 3.4141 -0.3234 1.4717 14 6 2.9960 -0.2791 2.9462 15 1 3.0581 -1.2647 3.4075 16 6 3.6795 0.7621 3.7895 17 6 3.2704 2.1882 3.4768 18 6 1.7772 2.3311 3.3349 19 6 1.3026 1.4877 2.1502 20 6 1.5879 0.0118 2.4347 21 1 0.7948 -0.4831 2.9951 22 1 -0.3633 -1.0240 0.0866 23 1 -0.3633 0.5870 0.8436 24 1 -0.3633 0.4370 -0.9302 25 1 0.8826 1.2748 -3.4827 26 1 3.7029 0.6458 1.0653 27 1 4.1259 -1.1153 1.2383 28 1 3.4550 0.5600 4.8369 29 1 4.7559 0.6718 3.6446 30 1 3.6269 2.8450 4.2704 31 1 3.7223 2.4914 2.5325 32 1 1.5200 3.3767 3.1656 33 1 1.2977 1.9801 4.2488 34 1 1.8342 1.7941 1.2492 35 1 0.2314 1.6304 2.0077 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306424637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:26 Heat of formation + Delta-G solvation = 30.983279 kcal Electronic energy + Delta-G solvation = -14765.143155 eV Core-core repulsion = 12570.911155 eV Total energy + Delta-G solvation = -2194.232000 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.61642 -35.12707 -33.27383 -31.44234 -29.34667 -26.96475 -24.99904 -24.15976 -22.62653 -21.08725 -19.26875 -17.32352 -16.27671 -15.64145 -15.03940 -14.52051 -14.31280 -13.57599 -13.34931 -12.75148 -12.44468 -12.04229 -11.95335 -11.33963 -11.14866 -10.92898 -10.76883 -10.73918 -10.53529 -10.39436 -10.08489 -10.04807 -9.73272 -9.38524 -9.12161 -8.86382 -8.33951 -7.46607 -5.97715 -4.00794 3.32305 3.38913 3.43614 4.44361 4.83676 4.92464 5.06046 5.33196 5.35655 5.46826 5.61215 5.68460 5.83089 5.96817 6.04287 6.15471 6.27027 6.29004 6.37852 6.46703 6.47907 6.54563 6.67365 6.73868 6.81559 6.89803 7.04267 7.20430 7.47034 7.51724 7.87452 8.13446 8.34333 8.59519 9.06429 9.63589 11.09338 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046399 B = 0.009558 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.317699 B = 2928.850436 C = 3106.172103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.174 3.826 3 H 0.021 0.979 4 C -0.498 4.498 5 H 0.059 0.941 6 C 0.057 3.943 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.471 5.471 13 C 0.020 3.980 14 C -0.114 4.114 15 H 0.083 0.917 16 C -0.102 4.102 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.141 4.141 20 C 0.036 3.964 21 H 0.081 0.919 22 H 0.029 0.971 23 H 0.017 0.983 24 H 0.079 0.921 25 H 0.259 0.741 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 2.214 10.602 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.067 3.933 3 H 0.039 0.961 4 C -0.536 4.536 5 H 0.077 0.923 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.193 5.193 13 C -0.109 4.109 14 C -0.133 4.133 15 H 0.101 0.899 16 C -0.140 4.140 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.179 4.179 20 C -0.073 4.073 21 H 0.099 0.901 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.098 0.902 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.597 1.623 10.305 10.750 hybrid contribution 0.458 0.430 -0.965 1.152 sum 3.055 2.052 9.340 10.039 Atomic orbital electron populations 1.21945 0.98037 0.98848 1.00742 1.19888 0.92580 0.93228 0.87580 0.96143 1.21089 1.34371 1.08188 0.89980 0.92262 1.24936 0.95303 0.95202 0.98927 1.69910 1.37999 1.22040 1.23428 0.86544 0.79545 0.78973 0.82721 1.20827 1.21318 1.19910 1.68809 1.02819 1.45717 1.01968 1.23397 0.94466 0.99821 0.93224 1.22135 0.96411 0.98780 0.95961 0.89900 1.20532 0.99901 0.94415 0.99178 1.20791 0.96771 0.96479 1.01306 1.21032 0.95854 0.99484 0.98835 1.22181 1.02028 0.94761 0.98938 1.23080 0.95948 0.93225 0.95048 0.90122 0.95175 0.96463 0.90181 0.93104 0.92087 0.91118 0.92916 0.92265 0.92576 0.92459 0.92416 0.92648 0.89536 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.77 37.16 0.33 -3.10 16 2 C 0.17 4.42 1.27 -68.86 -0.09 4.34 16 3 H 0.02 0.57 5.06 -51.93 -0.26 0.31 16 4 C -0.50 -14.05 8.48 -34.44 -0.29 -14.34 16 5 H 0.06 1.71 7.82 -52.48 -0.41 1.30 16 6 C 0.06 1.61 5.35 -17.82 -0.10 1.51 16 7 N -0.89 -25.81 11.53 55.43 0.64 -25.17 16 8 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.47 -10.48 6.00 -234.10 -1.40 -11.88 16 13 C 0.02 0.40 6.83 -3.93 -0.03 0.38 16 14 C -0.11 -1.86 3.88 -92.14 -0.36 -2.22 16 15 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 16 C -0.10 -1.39 5.54 -28.72 -0.16 -1.55 16 17 C -0.12 -1.56 5.67 -28.59 -0.16 -1.73 16 18 C -0.11 -1.62 5.83 -27.91 -0.16 -1.79 16 19 C -0.14 -2.51 3.94 -26.75 -0.11 -2.61 16 20 C 0.04 0.67 4.06 -67.19 -0.27 0.40 16 21 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.02 0.37 5.05 -51.93 -0.26 0.11 16 24 H 0.08 2.18 6.24 -51.93 -0.32 1.85 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.06 1.26 7.00 -51.93 -0.36 0.89 16 27 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.06 0.84 7.96 -51.93 -0.41 0.42 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.79 4.69 -51.93 -0.24 1.55 16 35 H 0.07 1.25 6.25 -51.93 -0.32 0.92 16 LS Contribution 259.67 15.07 3.91 3.91 Total: -1.00 -28.68 259.67 -8.81 -37.49 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.54 Total: -0.41 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.40 Total: -20.71 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.76 Total: -37.05 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.68 -8.81 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306424637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.477 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds