Wall clock time and date at job start Mon Mar 30 2020 02:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47247 * 2 1 4 4 C 1.50704 * 109.47242 * 240.00449 * 2 1 3 5 5 H 1.08004 * 119.99944 * 245.39417 * 4 2 1 6 6 C 1.37873 * 120.00036 * 65.38391 * 4 2 1 7 7 N 1.31512 * 120.00315 * 355.41132 * 6 4 2 8 8 Si 1.86802 * 119.99911 * 175.40325 * 6 4 2 9 9 H 1.48500 * 109.47293 * 95.00309 * 8 6 4 10 10 H 1.48500 * 109.47312 * 215.00373 * 8 6 4 11 11 H 1.48497 * 109.46974 * 335.00392 * 8 6 4 12 12 N 1.46897 * 109.47294 * 120.00328 * 2 1 3 13 13 C 1.46785 * 110.46071 * 199.35792 * 12 2 1 14 14 C 1.53331 * 85.79445 * 139.10116 * 13 12 2 15 15 H 1.09002 * 111.42462 * 85.80384 * 14 13 12 16 16 C 1.50409 * 115.80510 * 214.30437 * 14 13 12 17 17 C 1.51622 * 114.38292 * 70.23544 * 16 14 13 18 18 C 1.50675 * 112.08561 * 45.38776 * 17 16 14 19 19 C 1.52972 * 109.15275 * 297.08184 * 18 17 16 20 20 C 1.48610 * 110.99990 * 297.76416 * 12 2 1 21 21 H 1.09001 * 115.06509 * 106.44817 * 20 12 2 22 22 H 1.08994 * 109.46929 * 184.83455 * 1 2 3 23 23 H 1.09001 * 109.46801 * 304.83282 * 1 2 3 24 24 H 1.09004 * 109.47131 * 64.83464 * 1 2 3 25 25 H 0.96996 * 120.00544 * 179.97438 * 7 6 4 26 26 H 1.08992 * 113.96491 * 24.77983 * 13 12 2 27 27 H 1.09009 * 113.44532 * 253.34985 * 13 12 2 28 28 H 1.09000 * 108.47220 * 191.45588 * 16 14 13 29 29 H 1.08992 * 108.47636 * 309.01315 * 16 14 13 30 30 H 1.09009 * 109.16797 * 167.01718 * 17 16 14 31 31 H 1.08993 * 109.17617 * 286.23163 * 17 16 14 32 32 H 1.08998 * 109.84493 * 176.89950 * 18 17 16 33 33 H 1.09007 * 109.05008 * 56.78320 * 18 17 16 34 34 H 1.09000 * 109.50583 * 303.25596 * 19 18 17 35 35 H 1.09001 * 109.50521 * 183.13487 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5796 -1.6365 -1.1339 6 6 1.7933 -0.1780 -2.4797 7 7 1.0505 0.9001 -2.6039 8 14 2.5246 -0.9881 -3.9957 9 1 1.5290 -1.9157 -4.5903 10 1 2.8845 0.0550 -4.9895 11 1 3.7418 -1.7477 -3.6126 12 7 2.0197 -0.6925 1.1994 13 6 3.4141 -0.3234 1.4717 14 6 2.9960 -0.2791 2.9462 15 1 3.0581 -1.2647 3.4075 16 6 3.6795 0.7621 3.7895 17 6 3.2704 2.1882 3.4768 18 6 1.7772 2.3311 3.3349 19 6 1.3026 1.4877 2.1502 20 6 1.5879 0.0118 2.4347 21 1 0.7948 -0.4831 2.9951 22 1 -0.3633 -1.0240 0.0866 23 1 -0.3633 0.5870 0.8436 24 1 -0.3633 0.4370 -0.9302 25 1 0.8826 1.2748 -3.4827 26 1 3.7029 0.6458 1.0653 27 1 4.1259 -1.1153 1.2383 28 1 3.4550 0.5600 4.8369 29 1 4.7559 0.6718 3.6446 30 1 3.6269 2.8450 4.2704 31 1 3.7223 2.4914 2.5325 32 1 1.5200 3.3767 3.1656 33 1 1.2977 1.9801 4.2488 34 1 1.8342 1.7941 1.2492 35 1 0.2314 1.6304 2.0077 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306424637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:26 Heat of formation + Delta-G solvation = 12.555474 kcal Electronic energy + Delta-G solvation = -14765.942245 eV Core-core repulsion = 12570.911155 eV Total energy + Delta-G solvation = -2195.031090 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.12703 -36.63067 -35.09036 -33.11371 -31.00604 -28.51019 -27.02675 -25.76279 -24.15168 -22.45155 -20.98163 -18.85646 -18.19759 -17.06869 -16.87026 -16.12806 -15.83730 -15.23024 -14.64993 -14.32465 -14.07187 -13.71992 -13.42753 -13.05442 -12.85402 -12.68469 -12.55304 -12.37421 -12.31168 -11.98021 -11.71750 -11.52262 -11.31250 -10.96048 -10.75712 -10.60807 -10.44063 -9.22899 -8.13247 -6.24179 1.37800 1.38340 1.49827 2.40101 3.14336 3.36878 3.56719 3.81361 4.10394 4.25693 4.33635 4.34814 4.48434 4.60566 4.72760 4.78485 4.87037 4.90455 4.94734 5.06708 5.09484 5.12583 5.19650 5.29648 5.36488 5.42354 5.46856 5.53396 5.55872 5.65562 5.76224 6.15158 6.31558 6.64558 6.90132 7.44280 8.92411 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.046399 B = 0.009558 C = 0.009012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.317699 B = 2928.850436 C = 3106.172103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.182 3.818 3 H -0.002 1.002 4 C -0.520 4.520 5 H 0.045 0.955 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.271 1.271 12 N -0.495 5.495 13 C 0.014 3.986 14 C -0.090 4.090 15 H 0.094 0.906 16 C -0.101 4.101 17 C -0.116 4.116 18 C -0.108 4.108 19 C -0.136 4.136 20 C 0.034 3.966 21 H 0.090 0.910 22 H 0.022 0.978 23 H 0.040 0.960 24 H 0.052 0.948 25 H 0.261 0.739 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 2.207 12.302 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.075 3.925 3 H 0.016 0.984 4 C -0.559 4.559 5 H 0.064 0.936 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.196 1.196 12 N -0.217 5.217 13 C -0.116 4.116 14 C -0.109 4.109 15 H 0.113 0.887 16 C -0.139 4.139 17 C -0.153 4.153 18 C -0.146 4.146 19 C -0.174 4.174 20 C -0.075 4.075 21 H 0.108 0.892 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.244 1.615 12.018 12.552 hybrid contribution 0.240 0.429 -1.477 1.556 sum 3.485 2.044 10.541 11.289 Atomic orbital electron populations 1.21784 0.97962 0.98386 1.00278 1.19644 0.92518 0.91989 0.88390 0.98423 1.21367 1.34712 1.08050 0.91725 0.93645 1.25694 0.95565 0.95803 1.01708 1.70024 1.38634 1.23014 1.24129 0.85566 0.78823 0.78201 0.79190 1.20260 1.20527 1.19583 1.68723 1.04524 1.46308 1.02111 1.23406 0.93137 0.98777 0.96237 1.22026 0.94311 1.00549 0.94028 0.88734 1.20538 1.00181 0.93270 0.99865 1.20821 0.95938 0.97132 1.01413 1.21005 0.96603 0.99270 0.97688 1.22043 1.00992 0.95136 0.99249 1.23227 0.97720 0.93222 0.93315 0.89221 0.95905 0.94117 0.92903 0.92950 0.93669 0.91462 0.90145 0.91099 0.89574 0.94494 0.91514 0.90606 0.93088 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.42 8.77 71.98 0.63 -5.79 16 2 C 0.18 9.54 1.27 44.17 0.06 9.59 16 3 H 0.00 -0.09 5.06 -2.39 -0.01 -0.10 16 4 C -0.52 -30.17 8.48 25.60 0.22 -29.96 16 5 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 6 C 0.01 0.62 5.35 84.65 0.45 1.07 16 7 N -0.92 -54.18 11.53 21.45 0.25 -53.93 16 8 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.49 -22.19 6.00 -894.55 -5.36 -27.56 16 13 C 0.01 0.55 6.83 86.30 0.59 1.14 16 14 C -0.09 -2.76 3.88 -11.58 -0.04 -2.81 16 15 H 0.09 2.70 8.14 -2.39 -0.02 2.69 16 16 C -0.10 -2.37 5.54 29.30 0.16 -2.21 16 17 C -0.12 -2.78 5.67 29.39 0.17 -2.61 16 18 C -0.11 -2.80 5.83 29.83 0.17 -2.62 16 19 C -0.14 -4.77 3.94 30.58 0.12 -4.65 16 20 C 0.03 1.22 4.06 44.31 0.18 1.40 16 21 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 22 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.04 1.82 5.05 -2.39 -0.01 1.81 16 24 H 0.05 2.96 6.24 -2.38 -0.01 2.94 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.05 1.92 7.00 -2.39 -0.02 1.90 16 27 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.04 1.03 7.96 -2.39 -0.02 1.01 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.05 2.18 4.69 -2.39 -0.01 2.16 16 35 H 0.06 2.16 6.25 -2.39 -0.01 2.14 16 Total: -1.00 -62.65 259.67 0.67 -61.98 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.05 Total: 9.66 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 2.70 Total: -37.43 kcal Atomic # 7 Polarization: -76.37 SS G_CDS: -5.12 Total: -81.49 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -62.65 0.67 -61.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306424637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.540 kcal (2) G-P(sol) polarization free energy of solvation -62.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds