Wall clock time and date at job start Mon Mar 30 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46960 * 2 1 4 4 C 1.50701 * 109.47098 * 240.00522 * 2 1 3 5 5 H 1.08003 * 119.99698 * 239.99387 * 4 2 1 6 6 C 1.37872 * 120.00216 * 59.99620 * 4 2 1 7 7 N 1.31509 * 120.00024 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46908 * 59.99775 * 8 6 4 10 10 H 1.48501 * 109.47113 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46728 * 300.00123 * 8 6 4 12 12 N 1.46894 * 109.47636 * 119.99921 * 2 1 3 13 13 C 1.48476 * 111.00583 * 179.87382 * 12 2 1 14 14 C 1.54916 * 103.22230 * 200.17479 * 13 12 2 15 15 C 1.54445 * 102.94344 * 37.71062 * 14 13 12 16 16 H 1.08994 * 111.72084 * 98.97359 * 15 14 13 17 17 C 1.54113 * 109.03157 * 222.91196 * 15 14 13 18 18 C 1.54882 * 104.15909 * 137.47692 * 17 15 14 19 19 C 1.54828 * 102.73743 * 321.54447 * 18 17 15 20 20 C 1.47928 * 110.99494 * 62.26451 * 12 2 1 21 21 H 1.08991 * 111.35236 * 23.74947 * 20 12 2 22 22 H 1.08994 * 109.46638 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46883 * 299.99574 * 1 2 3 24 24 H 1.08999 * 109.47195 * 59.99623 * 1 2 3 25 25 H 0.97007 * 120.00582 * 180.02562 * 7 6 4 26 26 H 1.08999 * 110.66395 * 318.61055 * 13 12 2 27 27 H 1.09002 * 110.66224 * 81.57026 * 13 12 2 28 28 H 1.09005 * 110.71770 * 156.07048 * 14 13 12 29 29 H 1.09000 * 110.72431 * 279.34377 * 14 13 12 30 30 H 1.09003 * 110.48924 * 256.14439 * 17 15 14 31 31 H 1.09002 * 110.49430 * 18.67188 * 17 15 14 32 32 H 1.09000 * 110.76157 * 79.86016 * 18 17 15 33 33 H 1.09000 * 110.75892 * 203.23510 * 18 17 15 34 34 H 1.09008 * 110.43841 * 156.53249 * 19 18 17 35 35 H 1.09002 * 110.44576 * 278.93456 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0082 12 7 2.0198 -0.6924 1.1994 13 6 3.5040 -0.7149 1.2321 14 6 3.8194 -1.8774 2.2063 15 6 2.7306 -2.9187 1.8662 16 1 3.1096 -3.6967 1.2035 17 6 2.1724 -3.5083 3.1761 18 6 0.6423 -3.5676 2.9431 19 6 0.3649 -2.2594 2.1628 20 6 1.5905 -2.1080 1.2065 21 1 1.3812 -2.4644 0.1980 22 1 -0.3632 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.7088 1.1616 -3.4844 26 1 3.9075 -0.9230 0.2412 27 1 3.8946 0.2280 1.6149 28 1 4.8132 -2.2821 2.0149 29 1 3.7285 -1.5486 3.2415 30 1 2.5717 -4.5083 3.3451 31 1 2.4073 -2.8573 4.0182 32 1 0.3762 -4.4385 2.3442 33 1 0.1069 -3.5720 3.8925 34 1 -0.5532 -2.3499 1.5822 35 1 0.2995 -1.4140 2.8478 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306466919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:54 Heat of formation + Delta-G solvation = -8.384501 kcal Electronic energy + Delta-G solvation = -14785.374975 eV Core-core repulsion = 12589.435860 eV Total energy + Delta-G solvation = -2195.939115 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.19655 -35.01008 -32.84953 -31.23816 -28.16982 -26.68297 -25.74222 -24.99367 -20.87620 -20.20138 -19.85696 -18.32379 -16.24032 -15.96057 -14.63445 -14.46071 -13.59145 -13.42552 -12.94986 -12.68981 -12.48950 -11.82110 -11.50169 -11.09823 -10.99602 -10.89826 -10.61734 -10.42146 -10.33629 -10.10211 -9.97110 -9.91286 -9.83295 -9.76036 -9.66785 -9.12759 -8.36025 -7.15357 -5.97199 -4.09320 3.28274 3.33547 3.35900 4.40603 4.94188 5.10592 5.12835 5.27983 5.48626 5.69732 5.79899 5.84929 5.98997 6.10928 6.20905 6.24614 6.33654 6.39744 6.49596 6.55212 6.65209 6.76534 6.82738 6.94897 6.95827 7.09288 7.14063 7.25723 7.61721 7.74681 8.03769 8.20950 8.32032 8.48341 9.01410 9.57316 11.03130 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.037514 B = 0.010680 C = 0.010127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.213576 B = 2621.165747 C = 2764.244780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.197 3.803 3 H 0.037 0.963 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.514 5.514 13 C 0.038 3.962 14 C -0.118 4.118 15 C -0.105 4.105 16 H 0.069 0.931 17 C -0.111 4.111 18 C -0.126 4.126 19 C -0.106 4.106 20 C 0.073 3.927 21 H 0.077 0.923 22 H 0.028 0.972 23 H 0.012 0.988 24 H 0.081 0.919 25 H 0.261 0.739 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 -6.364 8.222 10.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.090 3.910 3 H 0.054 0.946 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.237 5.237 13 C -0.090 4.090 14 C -0.156 4.156 15 C -0.124 4.124 16 H 0.087 0.913 17 C -0.149 4.149 18 C -0.164 4.164 19 C -0.144 4.144 20 C -0.036 4.036 21 H 0.095 0.905 22 H 0.047 0.953 23 H 0.031 0.969 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.416 -5.926 8.515 10.470 hybrid contribution 0.673 -0.859 -1.774 2.082 sum 2.089 -6.784 6.741 9.789 Atomic orbital electron populations 1.21780 0.97726 0.99155 0.99970 1.19368 0.92493 0.94352 0.84816 0.94552 1.21669 1.31721 1.12818 0.91719 0.92598 1.24912 0.94889 0.94850 0.98817 1.69875 1.36383 1.22704 1.23476 0.86753 0.79212 0.79887 0.82729 1.20348 1.21242 1.20374 1.65135 1.06578 1.11414 1.40600 1.23075 0.90806 0.96916 0.98192 1.22603 0.97231 0.96129 0.99635 1.22587 0.96396 0.97176 0.96264 0.91266 1.22394 0.95621 0.99618 0.97271 1.22506 0.95861 0.98537 0.99492 1.22706 0.97632 0.96316 0.97734 1.23255 0.93001 0.89493 0.97883 0.90532 0.95337 0.96857 0.90074 0.92890 0.92539 0.91995 0.92635 0.91701 0.92868 0.91720 0.92209 0.92406 0.92641 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.47 37.16 0.31 -2.84 16 2 C 0.20 4.99 2.43 -68.87 -0.17 4.82 16 3 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 4 C -0.54 -14.55 6.33 -34.44 -0.22 -14.77 16 5 H 0.06 1.51 6.12 -52.48 -0.32 1.19 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.51 -11.22 4.83 -213.67 -1.03 -12.25 16 13 C 0.04 0.77 6.34 -1.94 -0.01 0.76 16 14 C -0.12 -1.95 6.59 -24.96 -0.16 -2.11 16 15 C -0.11 -1.77 3.77 -88.40 -0.33 -2.11 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.11 -1.58 6.37 -25.16 -0.16 -1.74 16 18 C -0.13 -1.81 6.90 -24.77 -0.17 -1.98 16 19 C -0.11 -1.85 5.62 -24.06 -0.14 -1.99 16 20 C 0.07 1.45 2.19 -64.56 -0.14 1.31 16 21 H 0.08 1.75 6.13 -51.93 -0.32 1.43 16 22 H 0.03 0.67 5.94 -51.93 -0.31 0.36 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.06 1.25 6.25 -51.93 -0.32 0.92 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.01 7.23 -51.93 -0.38 0.63 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.90 7.22 -51.93 -0.37 0.52 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.98 7.27 -51.92 -0.38 0.61 16 35 H 0.07 1.29 8.02 -51.93 -0.42 0.87 16 LS Contribution 261.01 15.07 3.93 3.93 Total: -1.00 -27.50 261.01 -8.42 -35.93 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -5.65 Total: -0.36 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.28 Total: -18.88 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.40 Total: -36.84 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.50 -8.42 -35.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306466919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.541 kcal (2) G-P(sol) polarization free energy of solvation -27.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds