Wall clock time and date at job start Mon Mar 30 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46960 * 2 1 4 4 C 1.50701 * 109.47098 * 240.00522 * 2 1 3 5 5 H 1.08003 * 119.99698 * 239.99387 * 4 2 1 6 6 C 1.37872 * 120.00216 * 59.99620 * 4 2 1 7 7 N 1.31509 * 120.00024 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00110 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.46908 * 59.99775 * 8 6 4 10 10 H 1.48501 * 109.47113 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46728 * 300.00123 * 8 6 4 12 12 N 1.46894 * 109.47636 * 119.99921 * 2 1 3 13 13 C 1.48476 * 111.00583 * 179.87382 * 12 2 1 14 14 C 1.54916 * 103.22230 * 200.17479 * 13 12 2 15 15 C 1.54445 * 102.94344 * 37.71062 * 14 13 12 16 16 H 1.08994 * 111.72084 * 98.97359 * 15 14 13 17 17 C 1.54113 * 109.03157 * 222.91196 * 15 14 13 18 18 C 1.54882 * 104.15909 * 137.47692 * 17 15 14 19 19 C 1.54828 * 102.73743 * 321.54447 * 18 17 15 20 20 C 1.47928 * 110.99494 * 62.26451 * 12 2 1 21 21 H 1.08991 * 111.35236 * 23.74947 * 20 12 2 22 22 H 1.08994 * 109.46638 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46883 * 299.99574 * 1 2 3 24 24 H 1.08999 * 109.47195 * 59.99623 * 1 2 3 25 25 H 0.97007 * 120.00582 * 180.02562 * 7 6 4 26 26 H 1.08999 * 110.66395 * 318.61055 * 13 12 2 27 27 H 1.09002 * 110.66224 * 81.57026 * 13 12 2 28 28 H 1.09005 * 110.71770 * 156.07048 * 14 13 12 29 29 H 1.09000 * 110.72431 * 279.34377 * 14 13 12 30 30 H 1.09003 * 110.48924 * 256.14439 * 17 15 14 31 31 H 1.09002 * 110.49430 * 18.67188 * 17 15 14 32 32 H 1.09000 * 110.76157 * 79.86016 * 18 17 15 33 33 H 1.09000 * 110.75892 * 203.23510 * 18 17 15 34 34 H 1.09008 * 110.43841 * 156.53249 * 19 18 17 35 35 H 1.09002 * 110.44576 * 278.93456 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0082 12 7 2.0198 -0.6924 1.1994 13 6 3.5040 -0.7149 1.2321 14 6 3.8194 -1.8774 2.2063 15 6 2.7306 -2.9187 1.8662 16 1 3.1096 -3.6967 1.2035 17 6 2.1724 -3.5083 3.1761 18 6 0.6423 -3.5676 2.9431 19 6 0.3649 -2.2594 2.1628 20 6 1.5905 -2.1080 1.2065 21 1 1.3812 -2.4644 0.1980 22 1 -0.3632 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 0.7088 1.1616 -3.4844 26 1 3.9075 -0.9230 0.2412 27 1 3.8946 0.2280 1.6149 28 1 4.8132 -2.2821 2.0149 29 1 3.7285 -1.5486 3.2415 30 1 2.5717 -4.5083 3.3451 31 1 2.4073 -2.8573 4.0182 32 1 0.3762 -4.4385 2.3442 33 1 0.1069 -3.5720 3.8925 34 1 -0.5532 -2.3499 1.5822 35 1 0.2995 -1.4140 2.8478 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306466919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:54 Heat of formation + Delta-G solvation = -24.652274 kcal Electronic energy + Delta-G solvation = -14786.080399 eV Core-core repulsion = 12589.435860 eV Total energy + Delta-G solvation = -2196.644539 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.72214 -36.70468 -34.59231 -33.00561 -29.87649 -28.14989 -27.36061 -26.95887 -22.60125 -21.65632 -21.34856 -19.94112 -18.19802 -17.58620 -16.49918 -15.92848 -15.19699 -14.92088 -14.66851 -14.33530 -14.07383 -13.48900 -13.18590 -12.92078 -12.87672 -12.55596 -12.40096 -12.00450 -11.75246 -11.69742 -11.58034 -11.50872 -11.38906 -11.33316 -11.17903 -11.06458 -10.48621 -8.99964 -8.06388 -6.27359 1.36362 1.36522 1.44403 2.38017 3.13315 3.49082 3.71430 3.81719 4.06386 4.40778 4.46645 4.55526 4.70547 4.73692 4.82482 4.89569 4.96487 4.98966 5.05486 5.12257 5.17648 5.20317 5.23736 5.28285 5.38735 5.41145 5.52296 5.57367 5.62604 5.72703 5.99275 6.19127 6.38326 6.58549 6.94511 7.42535 8.90671 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.037514 B = 0.010680 C = 0.010127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.213576 B = 2621.165747 C = 2764.244780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.201 3.799 3 H -0.001 1.001 4 C -0.545 4.545 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.515 5.515 13 C 0.031 3.969 14 C -0.105 4.105 15 C -0.105 4.105 16 H 0.070 0.930 17 C -0.103 4.103 18 C -0.118 4.118 19 C -0.104 4.104 20 C 0.065 3.935 21 H 0.040 0.960 22 H 0.031 0.969 23 H 0.024 0.976 24 H 0.056 0.944 25 H 0.262 0.738 26 H 0.029 0.971 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -8.224 9.557 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 H 0.017 0.983 4 C -0.584 4.584 5 H 0.069 0.931 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.199 1.199 12 N -0.239 5.239 13 C -0.097 4.097 14 C -0.143 4.143 15 C -0.124 4.124 16 H 0.089 0.911 17 C -0.140 4.140 18 C -0.155 4.155 19 C -0.142 4.142 20 C -0.044 4.044 21 H 0.058 0.942 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.059 -7.797 9.864 12.741 hybrid contribution 0.473 -0.240 -2.177 2.241 sum 2.533 -8.037 7.686 11.405 Atomic orbital electron populations 1.21573 0.97342 0.99003 0.99220 1.19151 0.92765 0.92715 0.86111 0.98292 1.21848 1.31417 1.12536 0.92590 0.93116 1.25660 0.95206 0.95606 1.01685 1.70004 1.37366 1.23898 1.24046 0.85766 0.78717 0.78856 0.79264 1.19815 1.20787 1.19921 1.65108 1.07789 1.12764 1.38200 1.23148 0.89640 0.98870 0.98037 1.22567 0.98245 0.94195 0.99262 1.22606 0.95258 0.96933 0.97647 0.91126 1.22362 0.95065 1.00996 0.95579 1.22481 0.96430 0.96537 1.00090 1.22651 0.96019 0.98225 0.97301 1.23302 0.95630 0.88481 0.97029 0.94213 0.95044 0.95703 0.92566 0.92897 0.95227 0.91813 0.90497 0.90024 0.90299 0.90848 0.91531 0.90050 0.93692 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 8.47 71.98 0.61 -5.13 16 2 C 0.20 10.52 2.43 44.17 0.11 10.63 16 3 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 4 C -0.54 -30.15 6.33 25.60 0.16 -29.99 16 5 H 0.05 2.81 6.12 -2.91 -0.02 2.79 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -53.35 11.32 21.44 0.24 -53.11 16 8 Si 0.95 44.12 29.54 68.60 2.03 46.14 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 12 N -0.52 -22.71 4.83 -829.91 -4.01 -26.72 16 13 C 0.03 1.25 6.34 86.65 0.55 1.80 16 14 C -0.10 -3.19 6.59 31.74 0.21 -2.99 16 15 C -0.11 -3.30 3.77 -9.36 -0.04 -3.33 16 16 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 17 C -0.10 -2.48 6.37 31.61 0.20 -2.28 16 18 C -0.12 -2.97 6.90 31.86 0.22 -2.75 16 19 C -0.10 -3.49 5.62 32.33 0.18 -3.31 16 20 C 0.06 2.54 2.19 46.39 0.10 2.64 16 21 H 0.04 1.85 6.13 -2.39 -0.01 1.84 16 22 H 0.03 1.52 5.94 -2.39 -0.01 1.50 16 23 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 25 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.03 1.33 6.25 -2.39 -0.01 1.32 16 27 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.08 2.24 7.23 -2.39 -0.02 2.23 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.69 7.22 -2.39 -0.02 1.67 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.04 1.57 7.27 -2.38 -0.02 1.55 16 35 H 0.06 2.24 8.02 -2.39 -0.02 2.23 16 Total: -1.00 -60.07 261.01 2.07 -58.00 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.05 Total: 8.92 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 2.76 Total: -33.25 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -3.76 Total: -79.83 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -60.07 2.07 -58.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306466919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.352 kcal (2) G-P(sol) polarization free energy of solvation -60.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds