Wall clock time and date at job start Mon Mar 30 2020 02:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46976 * 2 1 4 4 C 1.50706 * 109.46786 * 240.00552 * 2 1 3 5 5 H 1.07997 * 119.99751 * 275.12221 * 4 2 1 6 6 C 1.37875 * 120.00222 * 95.12984 * 4 2 1 7 7 N 1.31509 * 120.00108 * 175.10951 * 6 4 2 8 8 Si 1.86807 * 119.99793 * 355.10710 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.76012 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.75638 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.75951 * 8 6 4 12 12 N 1.46894 * 109.47254 * 120.00275 * 2 1 3 13 13 C 1.50161 * 111.00058 * 181.11011 * 12 2 1 14 14 C 1.55904 * 106.32518 * 145.82509 * 13 12 2 15 15 C 1.50956 * 102.90581 * 5.80332 * 14 13 12 16 16 H 1.08994 * 109.54692 * 82.35869 * 15 14 13 17 17 C 1.50690 * 123.40286 * 215.89463 * 15 14 13 18 18 C 1.55808 * 103.70822 * 146.53018 * 17 15 14 19 19 C 1.56266 * 105.86828 * 352.11690 * 18 17 15 20 20 C 1.44518 * 111.00218 * 294.99796 * 12 2 1 21 21 H 1.09004 * 109.96647 * 309.30822 * 20 12 2 22 22 H 1.09003 * 109.47218 * 66.23754 * 1 2 3 23 23 H 1.09005 * 109.46726 * 306.24213 * 1 2 3 24 24 H 1.08994 * 109.46964 * 186.24071 * 1 2 3 25 25 H 0.97005 * 119.99649 * 179.97438 * 7 6 4 26 26 H 1.08997 * 110.08341 * 265.04611 * 13 12 2 27 27 H 1.09005 * 110.08131 * 26.61284 * 13 12 2 28 28 H 1.08995 * 110.72739 * 247.44621 * 14 13 12 29 29 H 1.09002 * 110.88239 * 124.22579 * 14 13 12 30 30 H 1.09009 * 111.49404 * 27.66489 * 17 15 14 31 31 H 1.08998 * 110.01214 * 264.68814 * 17 15 14 32 32 H 1.08996 * 110.17226 * 233.01093 * 18 17 15 33 33 H 1.09001 * 110.22842 * 111.23979 * 18 17 15 34 34 H 1.09003 * 110.95455 * 216.99325 * 19 18 17 35 35 H 1.08994 * 110.98967 * 93.27454 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1335 -1.7855 -1.2299 6 6 2.3627 0.0125 -2.3573 7 7 2.8912 -0.5953 -3.3969 8 14 2.0597 1.8551 -2.4069 9 1 3.2072 2.5625 -1.7839 10 1 1.9140 2.2950 -3.8178 11 1 0.8170 2.1728 -1.6586 12 7 2.0197 -0.6925 1.1993 13 6 3.5205 -0.6891 1.2477 14 6 3.9102 -0.5893 2.7539 15 6 2.5771 -0.6922 3.4546 16 1 2.2923 -1.7404 3.5443 17 6 2.2398 0.0675 4.7115 18 6 0.7169 0.3634 4.5666 19 6 0.3310 -0.0817 3.1192 20 6 1.6548 0.0272 2.3983 21 1 1.9436 1.0743 2.3063 22 1 -0.3634 0.4141 -0.9406 23 1 -0.3633 0.6076 0.8289 24 1 -0.3633 -1.0215 0.1117 25 1 3.1233 -0.0868 -4.1897 26 1 3.9109 -1.6127 0.8204 27 1 3.9106 0.1704 0.7024 28 1 4.3851 0.3684 2.9669 29 1 4.5621 -1.4140 3.0420 30 1 2.8039 0.9978 4.7796 31 1 2.4253 -0.5566 5.5857 32 1 0.5271 1.4289 4.6954 33 1 0.1501 -0.2104 5.2999 34 1 -0.4054 0.5954 2.6865 35 1 -0.0341 -1.1086 3.1109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306466921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:57 Heat of formation + Delta-G solvation = 6.131498 kcal Electronic energy + Delta-G solvation = -14658.182155 eV Core-core repulsion = 12462.872501 eV Total energy + Delta-G solvation = -2195.309654 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.88839 -35.34347 -33.01440 -31.68684 -28.96992 -26.81589 -26.24008 -24.80713 -21.09674 -20.36409 -19.66218 -18.88122 -16.82232 -15.58031 -14.94083 -14.48734 -14.34554 -13.71284 -13.15862 -12.67682 -12.46586 -12.05277 -11.94237 -11.82178 -11.53274 -11.07497 -10.86114 -10.64389 -10.49276 -10.27647 -10.25951 -10.14130 -9.98135 -9.80114 -9.45309 -8.98376 -8.53881 -7.41907 -6.07094 -4.04877 3.25552 3.34919 3.37882 4.36026 4.40926 4.85693 5.02062 5.18319 5.32490 5.43274 5.50981 5.62972 5.76923 5.83298 5.89144 6.03089 6.09815 6.15426 6.21014 6.30706 6.38723 6.46762 6.56164 6.66636 6.68013 6.75169 6.78901 6.89504 6.96235 7.29564 7.59919 7.98843 8.10531 8.70366 9.04648 9.57355 11.06221 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.042694 B = 0.010404 C = 0.009530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.668457 B = 2690.650772 C = 2937.363000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.170 3.830 3 H -0.001 1.001 4 C -0.499 4.499 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.870 3.130 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.486 5.486 13 C 0.056 3.944 14 C -0.121 4.121 15 C -0.112 4.112 16 H 0.080 0.920 17 C -0.107 4.107 18 C -0.122 4.122 19 C -0.102 4.102 20 C 0.049 3.951 21 H 0.032 0.968 22 H 0.047 0.953 23 H 0.024 0.976 24 H 0.052 0.948 25 H 0.263 0.737 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 2.824 13.930 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.063 3.937 3 H 0.017 0.983 4 C -0.538 4.538 5 H 0.098 0.902 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.697 3.303 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.189 1.189 12 N -0.210 5.210 13 C -0.071 4.071 14 C -0.159 4.159 15 C -0.131 4.131 16 H 0.098 0.902 17 C -0.145 4.145 18 C -0.160 4.160 19 C -0.140 4.140 20 C -0.061 4.061 21 H 0.050 0.950 22 H 0.066 0.934 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.853 2.309 13.685 14.002 hybrid contribution 0.223 1.924 -0.311 1.961 sum -1.630 4.233 13.374 14.123 Atomic orbital electron populations 1.22007 0.97921 1.00428 0.98860 1.19873 0.92338 0.91930 0.89597 0.98331 1.20899 1.42635 0.95892 0.94374 0.90217 1.24988 0.94451 0.97811 0.95825 1.69897 1.42390 1.36162 1.05207 0.86994 0.79391 0.86746 0.77148 1.20517 1.21409 1.18946 1.64703 1.07174 1.48179 1.00962 1.23354 0.88685 1.01993 0.93082 1.21970 0.96471 1.01009 0.96430 1.21995 0.96327 1.00404 0.94388 0.90151 1.21566 0.96051 0.99660 0.97252 1.22891 0.95574 1.00648 0.96872 1.21858 0.96477 1.01784 0.93865 1.22563 0.95768 0.95627 0.92176 0.94976 0.93389 0.95753 0.92885 0.92688 0.90365 0.93646 0.92418 0.91740 0.91999 0.92183 0.92157 0.91950 0.91859 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.57 37.16 0.32 -2.65 16 2 C 0.17 4.12 1.33 -68.86 -0.09 4.02 16 3 H 0.00 -0.02 5.55 -51.93 -0.29 -0.31 16 4 C -0.50 -14.11 8.29 -34.44 -0.29 -14.39 16 5 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 8 Si 0.87 21.74 26.40 -169.99 -4.49 17.26 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.26 -6.38 6.48 56.52 0.37 -6.01 16 12 N -0.49 -10.47 5.10 -215.31 -1.10 -11.57 16 13 C 0.06 1.14 5.95 -0.44 0.00 1.14 16 14 C -0.12 -1.92 6.77 -26.21 -0.18 -2.09 16 15 C -0.11 -1.72 2.89 -90.29 -0.26 -1.98 16 16 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 17 C -0.11 -1.35 6.68 -26.39 -0.18 -1.53 16 18 C -0.12 -1.50 6.93 -23.48 -0.16 -1.66 16 19 C -0.10 -1.55 5.85 -25.92 -0.15 -1.70 16 20 C 0.05 0.88 1.67 -67.41 -0.11 0.77 16 21 H 0.03 0.62 8.00 -51.93 -0.42 0.20 16 22 H 0.05 1.09 7.22 -51.93 -0.37 0.71 16 23 H 0.02 0.47 5.62 -51.93 -0.29 0.18 16 24 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.05 0.99 7.78 -51.93 -0.40 0.59 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.96 6.61 -51.93 -0.34 0.62 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 265.11 15.07 4.00 4.00 Total: -1.00 -29.62 265.11 -7.96 -37.57 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -5.94 Total: -2.43 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.20 Total: -18.13 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.33 Total: -38.27 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.49 Total: 17.26 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.62 -7.96 -37.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306466921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.704 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds