Wall clock time and date at job start Mon Mar 30 2020 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47071 * 2 1 4 4 C 1.50700 * 109.47265 * 240.00217 * 2 1 3 5 5 H 1.07997 * 120.00580 * 239.99759 * 4 2 1 6 6 C 1.37881 * 119.99967 * 59.99837 * 4 2 1 7 7 N 1.31512 * 120.00053 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99955 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47160 * 90.00250 * 8 6 4 10 10 H 1.48503 * 109.46828 * 210.00117 * 8 6 4 11 11 H 1.48499 * 109.47013 * 329.99899 * 8 6 4 12 12 N 1.46901 * 109.47193 * 120.00112 * 2 1 3 13 13 C 1.48477 * 110.99819 * 177.38970 * 12 2 1 14 14 C 1.54933 * 103.21722 * 159.82997 * 13 12 2 15 15 C 1.54442 * 102.93679 * 322.29201 * 14 13 12 16 16 H 1.08996 * 112.39774 * 260.63417 * 15 14 13 17 17 C 1.54113 * 109.03076 * 136.23335 * 15 14 13 18 18 C 1.54884 * 104.15903 * 222.51518 * 17 15 14 19 19 C 1.54821 * 102.90325 * 38.35999 * 18 17 15 20 20 C 1.47917 * 111.00061 * 295.00040 * 12 2 1 21 21 H 1.09002 * 111.86866 * 336.56811 * 20 12 2 22 22 H 1.08995 * 109.47475 * 299.99934 * 1 2 3 23 23 H 1.09008 * 109.47323 * 60.00151 * 1 2 3 24 24 H 1.09001 * 109.47011 * 179.97438 * 1 2 3 25 25 H 0.97006 * 119.99993 * 179.97438 * 7 6 4 26 26 H 1.08996 * 110.67040 * 278.26234 * 13 12 2 27 27 H 1.08999 * 110.67264 * 41.23117 * 13 12 2 28 28 H 1.09001 * 110.71852 * 203.92751 * 14 13 12 29 29 H 1.08998 * 110.71793 * 80.65233 * 14 13 12 30 30 H 1.09001 * 110.49470 * 103.84681 * 17 15 14 31 31 H 1.08999 * 110.49655 * 341.18515 * 17 15 14 32 32 H 1.09002 * 110.75899 * 156.76674 * 18 17 15 33 33 H 1.08997 * 110.75937 * 279.96143 * 18 17 15 34 34 H 1.09003 * 110.44436 * 81.03286 * 19 18 17 35 35 H 1.08998 * 110.44750 * 203.55560 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.3449 -2.1614 -4.4125 10 1 2.4873 -0.1399 -5.1121 11 1 3.6309 -1.7563 -3.7120 12 7 2.0196 -0.6925 1.1994 13 6 3.5025 -0.7672 1.2025 14 6 3.8414 -1.0187 2.6933 15 6 2.8020 -0.1504 3.4354 16 1 3.2162 0.8025 3.7648 17 6 2.2226 -0.9573 4.6137 18 6 0.7040 -0.6558 4.5689 19 6 0.4021 -0.6259 3.0507 20 6 1.6461 0.0442 2.4265 21 1 1.4659 1.1005 2.2269 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7095 1.1619 -3.4845 26 1 3.8473 -1.5961 0.5844 27 1 3.9359 0.1725 0.8601 28 1 4.8544 -0.6860 2.9199 29 1 3.7148 -2.0716 2.9452 30 1 2.6514 -0.6175 5.5564 31 1 2.4044 -2.0227 4.4727 32 1 0.1382 -1.4476 5.0598 33 1 0.4884 0.3106 5.0246 34 1 0.2839 -1.6389 2.6660 35 1 -0.4923 -0.0355 2.8518 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306466923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:02 Heat of formation + Delta-G solvation = -8.507255 kcal Electronic energy + Delta-G solvation = -14601.214925 eV Core-core repulsion = 12405.270486 eV Total energy + Delta-G solvation = -2195.944438 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29259 -35.01177 -32.91207 -31.34887 -28.36913 -26.90876 -25.80658 -24.78000 -20.88745 -20.34161 -19.88298 -18.37499 -16.42815 -15.69102 -14.84023 -14.49743 -13.84025 -13.49151 -13.01635 -12.72857 -12.41771 -11.98567 -11.40769 -11.22623 -11.07677 -10.88953 -10.55490 -10.51783 -10.44570 -10.22138 -10.14679 -10.03404 -9.92839 -9.80590 -9.67490 -8.79552 -8.38766 -7.20450 -5.97457 -4.01822 3.32614 3.38722 3.42105 4.43840 4.82399 4.98770 5.03378 5.31372 5.41403 5.61190 5.71818 5.75944 5.87729 5.99230 6.02267 6.14539 6.23702 6.32245 6.35436 6.44178 6.58559 6.63195 6.73162 6.83510 6.87041 6.95399 7.14828 7.20180 7.56988 7.74370 7.87654 8.22261 8.39525 8.64486 9.05236 9.63193 11.09344 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.050297 B = 0.009226 C = 0.008271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.562009 B = 3034.023553 C = 3384.648384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.203 3.797 3 H -0.003 1.003 4 C -0.501 4.501 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.505 5.505 13 C 0.052 3.948 14 C -0.120 4.120 15 C -0.103 4.103 16 H 0.071 0.929 17 C -0.112 4.112 18 C -0.126 4.126 19 C -0.105 4.105 20 C 0.065 3.935 21 H 0.048 0.952 22 H 0.009 0.991 23 H 0.082 0.918 24 H 0.032 0.968 25 H 0.259 0.741 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.037 -1.846 11.142 11.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.015 0.985 4 C -0.540 4.540 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.230 5.230 13 C -0.076 4.076 14 C -0.158 4.158 15 C -0.122 4.122 16 H 0.089 0.911 17 C -0.150 4.150 18 C -0.164 4.164 19 C -0.143 4.143 20 C -0.045 4.045 21 H 0.066 0.934 22 H 0.028 0.972 23 H 0.100 0.900 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.718 -2.243 10.959 11.318 hybrid contribution 0.598 0.506 -1.001 1.271 sum 2.317 -1.737 9.958 10.371 Atomic orbital electron populations 1.21795 0.97649 0.99481 0.99781 1.19405 0.92594 0.91887 0.86437 0.98531 1.21150 1.30825 1.12183 0.89846 0.92090 1.24941 0.95280 0.95083 0.99006 1.69901 1.37111 1.23040 1.23292 0.86536 0.79211 0.79299 0.82576 1.20704 1.21375 1.19973 1.64950 1.08170 1.47836 1.02048 1.22944 0.90106 1.00365 0.94152 1.22659 0.97306 0.99526 0.96353 1.22561 0.96191 0.98008 0.95434 0.91073 1.22406 0.95516 0.99916 0.97115 1.22522 0.95951 1.00538 0.97393 1.22430 0.96932 1.01861 0.93108 1.22973 0.94098 0.95934 0.91465 0.93369 0.97235 0.89981 0.94873 0.93069 0.90694 0.94628 0.92422 0.91274 0.92695 0.91471 0.92219 0.92286 0.90473 0.92485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.53 37.16 0.32 -2.91 16 2 C 0.20 5.26 1.77 -68.87 -0.12 5.14 16 3 H 0.00 -0.08 8.02 -51.93 -0.42 -0.50 16 4 C -0.50 -13.99 8.06 -34.44 -0.28 -14.27 16 5 H 0.06 1.70 6.80 -52.49 -0.36 1.34 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.51 -11.15 4.59 -214.76 -0.99 -12.14 16 13 C 0.05 1.06 5.69 -1.93 -0.01 1.05 16 14 C -0.12 -1.92 6.60 -24.95 -0.16 -2.09 16 15 C -0.10 -1.62 3.82 -88.41 -0.34 -1.95 16 16 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.11 -1.50 6.37 -25.16 -0.16 -1.66 16 18 C -0.13 -1.71 6.89 -24.78 -0.17 -1.88 16 19 C -0.11 -1.78 5.50 -25.00 -0.14 -1.91 16 20 C 0.06 1.22 2.61 -65.51 -0.17 1.05 16 21 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 22 H 0.01 0.20 5.97 -51.93 -0.31 -0.11 16 23 H 0.08 2.25 6.07 -51.92 -0.32 1.93 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.07 1.56 7.31 -51.93 -0.38 1.18 16 27 H 0.04 0.76 8.02 -51.93 -0.42 0.34 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.06 7.22 -51.93 -0.37 0.69 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.90 7.22 -51.93 -0.37 0.53 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.41 7.97 -51.93 -0.41 1.00 16 35 H 0.06 0.96 7.22 -51.93 -0.37 0.59 16 LS Contribution 264.57 15.07 3.99 3.99 Total: -1.00 -28.55 264.57 -8.53 -37.08 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.80 Total: -2.35 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.33 Total: -17.91 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.36 Total: -37.43 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.55 -8.53 -37.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306466923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.568 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds