Wall clock time and date at job start Mon Mar 30 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47012 * 2 1 4 4 C 1.50699 * 109.47141 * 239.99527 * 2 1 3 5 5 H 1.07997 * 120.00270 * 245.39006 * 4 2 1 6 6 C 1.37882 * 119.99854 * 65.39640 * 4 2 1 7 7 N 1.31515 * 119.99856 * 9.90581 * 6 4 2 8 8 Si 1.86800 * 120.00158 * 190.18607 * 6 4 2 9 9 H 1.48500 * 109.47187 * 179.72416 * 8 6 4 10 10 H 1.48503 * 109.46873 * 299.72216 * 8 6 4 11 11 H 1.48496 * 109.46943 * 59.71885 * 8 6 4 12 12 N 1.46901 * 109.46775 * 120.00018 * 2 1 3 13 13 C 1.46900 * 110.99786 * 254.08087 * 12 2 1 14 14 C 1.53004 * 109.64303 * 57.00701 * 13 12 2 15 15 C 1.53028 * 109.64033 * 296.58988 * 13 12 2 16 16 C 1.50072 * 110.14420 * 190.88084 * 15 13 12 17 17 C 1.29435 * 124.07937 * 17.13368 * 16 15 13 18 18 C 1.50068 * 124.07394 * 359.54927 * 17 16 15 19 19 C 1.52951 * 110.30319 * 16.95028 * 18 17 16 20 20 H 1.09002 * 109.47337 * 175.08489 * 1 2 3 21 21 H 1.08999 * 109.47146 * 295.08937 * 1 2 3 22 22 H 1.09003 * 109.46842 * 55.08633 * 1 2 3 23 23 H 0.97001 * 120.00370 * 357.50218 * 7 6 4 24 24 H 1.00901 * 111.00013 * 18.03168 * 12 2 1 25 25 H 1.09003 * 109.46781 * 58.74269 * 14 13 12 26 26 H 1.09003 * 109.47105 * 178.73473 * 14 13 12 27 27 H 1.08993 * 109.46872 * 298.74190 * 14 13 12 28 28 H 1.08997 * 109.35825 * 311.08456 * 15 13 12 29 29 H 1.08995 * 109.36061 * 70.80949 * 15 13 12 30 30 H 1.08003 * 117.96036 * 197.15301 * 16 15 13 31 31 H 1.08001 * 117.96816 * 179.52641 * 17 16 15 32 32 H 1.09003 * 109.35957 * 137.32288 * 18 17 16 33 33 H 1.09005 * 109.36042 * 257.03899 * 18 17 16 34 34 H 1.09002 * 109.80030 * 191.12215 * 19 18 17 35 35 H 1.08992 * 109.43715 * 70.51439 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5796 -1.6365 -1.1337 6 6 1.7935 -0.1782 -2.4797 7 7 1.3034 1.0369 -2.5940 8 14 2.1585 -1.1858 -4.0097 9 1 1.8109 -0.3951 -5.2177 10 1 3.6026 -1.5305 -4.0424 11 1 1.3524 -2.4326 -3.9852 12 7 2.0196 -0.6925 1.1995 13 6 2.5497 0.2642 2.1801 14 6 1.4681 1.2849 2.5395 15 6 3.7629 0.9865 1.5901 16 6 4.4712 1.7654 2.6596 17 6 4.3062 1.5705 3.9285 18 6 3.3763 0.5448 4.5077 19 6 2.9924 -0.4846 3.4436 20 1 -0.3634 -1.0239 -0.0881 21 1 -0.3633 0.4358 0.9307 22 1 -0.3633 0.5882 -0.8427 23 1 1.0760 1.5449 -1.7995 24 1 1.2956 -1.2648 1.6075 25 1 0.5996 0.7662 2.9456 26 1 1.8571 1.9797 3.2839 27 1 1.1770 1.8358 1.6452 28 1 4.4476 0.2536 1.1635 29 1 3.4316 1.6695 0.8080 30 1 5.1613 2.5368 2.3513 31 1 4.8733 2.1838 4.6132 32 1 3.8679 0.0401 5.3394 33 1 2.4733 1.0380 4.8675 34 1 2.1733 -1.1044 3.8081 35 1 3.8557 -1.1097 3.2156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306865639.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:23 Heat of formation + Delta-G solvation = 2.448394 kcal Electronic energy + Delta-G solvation = -14550.002911 eV Core-core repulsion = 12354.533546 eV Total energy + Delta-G solvation = -2195.469366 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.29710 -35.51196 -32.73769 -30.65390 -29.80121 -27.33255 -26.33514 -24.67190 -23.01966 -20.56344 -19.86734 -16.80987 -16.56903 -16.10502 -14.70660 -14.01619 -13.64736 -13.63876 -13.51152 -12.96757 -12.48749 -12.26736 -11.99187 -11.58567 -11.43700 -11.32808 -10.93354 -10.87878 -10.62254 -10.42439 -10.12380 -10.04756 -9.96173 -9.52583 -8.68368 -8.65360 -8.17782 -7.22310 -6.24116 -3.91707 2.56598 3.49552 3.51353 3.69949 4.58651 4.90725 5.00228 5.17051 5.44392 5.48614 5.56931 5.61677 5.74683 5.78087 5.94920 6.03628 6.17219 6.24516 6.36825 6.42193 6.45961 6.51863 6.62318 6.66389 6.75903 6.84387 6.99218 7.15635 7.27665 7.37244 8.05965 8.40365 8.49848 8.76185 9.01924 9.76747 11.11707 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047464 B = 0.008746 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.775901 B = 3200.829434 C = 3345.985817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.198 3.802 3 H 0.026 0.974 4 C -0.572 4.572 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 1.067 2.933 9 H -0.285 1.285 10 H -0.289 1.289 11 H -0.290 1.290 12 N -0.669 5.669 13 C 0.117 3.883 14 C -0.178 4.178 15 C -0.077 4.077 16 C -0.137 4.137 17 C -0.174 4.174 18 C -0.086 4.086 19 C -0.106 4.106 20 H 0.041 0.959 21 H 0.018 0.982 22 H 0.057 0.943 23 H 0.267 0.733 24 H 0.322 0.678 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 0.144 11.531 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.091 3.909 3 H 0.044 0.956 4 C -0.611 4.611 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.556 5.556 8 Si 0.896 3.104 9 H -0.211 1.211 10 H -0.216 1.216 11 H -0.216 1.216 12 N -0.297 5.297 13 C 0.025 3.975 14 C -0.237 4.237 15 C -0.114 4.114 16 C -0.155 4.155 17 C -0.192 4.192 18 C -0.123 4.123 19 C -0.144 4.144 20 H 0.060 0.940 21 H 0.037 0.963 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.139 0.861 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.286 0.045 9.571 10.120 hybrid contribution -0.862 0.467 2.008 2.234 sum 2.424 0.512 11.579 11.841 Atomic orbital electron populations 1.22553 1.00982 1.00381 0.98911 1.19332 0.89060 0.94326 0.88223 0.95600 1.21984 1.37738 1.10427 0.90988 0.92685 1.25748 0.95210 0.96711 1.01240 1.70825 1.42422 1.09141 1.33164 0.83564 0.76187 0.75029 0.75597 1.21080 1.21605 1.21626 1.60850 1.40135 1.22591 1.06151 1.20854 0.93691 0.91422 0.91524 1.22679 0.99043 1.00260 1.01678 1.20486 0.96291 0.98519 0.96086 1.22222 0.99230 0.99153 0.94925 1.21909 1.00953 1.00345 0.96022 1.20427 0.98195 0.95792 0.97907 1.21602 1.01138 0.97205 0.94410 0.93991 0.96324 0.92416 0.92228 0.86067 0.93552 0.92712 0.92246 0.89783 0.90783 0.88418 0.88686 0.91754 0.91327 0.92286 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.46 37.16 0.31 -3.62 16 2 C 0.20 4.87 1.31 -68.86 -0.09 4.78 16 3 H 0.03 0.69 4.32 -51.93 -0.22 0.47 16 4 C -0.57 -16.08 8.76 -34.44 -0.30 -16.39 16 5 H 0.05 1.59 7.83 -52.49 -0.41 1.18 16 6 C 0.01 0.40 5.23 -17.82 -0.09 0.30 16 7 N -0.92 -27.49 13.12 55.43 0.73 -26.76 16 8 Si 1.07 25.59 29.92 -169.99 -5.09 20.50 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.67 -14.12 5.97 -94.02 -0.56 -14.68 16 13 C 0.12 2.09 0.70 -131.38 -0.09 2.00 16 14 C -0.18 -3.03 6.71 37.16 0.25 -2.78 16 15 C -0.08 -1.42 4.59 -28.17 -0.13 -1.55 16 16 C -0.14 -2.09 9.42 -35.90 -0.34 -2.43 16 17 C -0.17 -2.37 9.16 -35.90 -0.33 -2.70 16 18 C -0.09 -1.11 5.48 -28.21 -0.15 -1.26 16 19 C -0.11 -1.60 5.18 -26.55 -0.14 -1.73 16 20 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.02 0.37 6.58 -51.93 -0.34 0.03 16 22 H 0.06 1.46 6.50 -51.93 -0.34 1.12 16 23 H 0.27 7.92 5.98 -40.82 -0.24 7.68 16 24 H 0.32 6.43 8.16 -39.29 -0.32 6.11 16 25 H 0.05 0.75 7.90 -51.93 -0.41 0.34 16 26 H 0.05 0.85 5.68 -51.93 -0.29 0.55 16 27 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 28 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 29 H 0.07 1.54 6.63 -51.93 -0.34 1.20 16 30 H 0.10 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.10 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.85 6.90 -51.93 -0.36 0.49 16 34 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 35 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 LS Contribution 264.78 15.07 3.99 3.99 Total: -1.00 -29.20 264.78 -7.39 -36.59 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.36 Total: 5.74 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -1.10 Total: -25.38 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.17 Total: -41.45 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.09 Total: 20.50 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.20 -7.39 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306865639.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.040 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds