Wall clock time and date at job start Mon Mar 30 2020 02:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47012 * 2 1 4 4 C 1.50699 * 109.47141 * 239.99527 * 2 1 3 5 5 H 1.07997 * 120.00270 * 245.39006 * 4 2 1 6 6 C 1.37882 * 119.99854 * 65.39640 * 4 2 1 7 7 N 1.31515 * 119.99856 * 9.90581 * 6 4 2 8 8 Si 1.86800 * 120.00158 * 190.18607 * 6 4 2 9 9 H 1.48500 * 109.47187 * 179.72416 * 8 6 4 10 10 H 1.48503 * 109.46873 * 299.72216 * 8 6 4 11 11 H 1.48496 * 109.46943 * 59.71885 * 8 6 4 12 12 N 1.46901 * 109.46775 * 120.00018 * 2 1 3 13 13 C 1.46900 * 110.99786 * 254.08087 * 12 2 1 14 14 C 1.53004 * 109.64303 * 57.00701 * 13 12 2 15 15 C 1.53028 * 109.64033 * 296.58988 * 13 12 2 16 16 C 1.50072 * 110.14420 * 190.88084 * 15 13 12 17 17 C 1.29435 * 124.07937 * 17.13368 * 16 15 13 18 18 C 1.50068 * 124.07394 * 359.54927 * 17 16 15 19 19 C 1.52951 * 110.30319 * 16.95028 * 18 17 16 20 20 H 1.09002 * 109.47337 * 175.08489 * 1 2 3 21 21 H 1.08999 * 109.47146 * 295.08937 * 1 2 3 22 22 H 1.09003 * 109.46842 * 55.08633 * 1 2 3 23 23 H 0.97001 * 120.00370 * 357.50218 * 7 6 4 24 24 H 1.00901 * 111.00013 * 18.03168 * 12 2 1 25 25 H 1.09003 * 109.46781 * 58.74269 * 14 13 12 26 26 H 1.09003 * 109.47105 * 178.73473 * 14 13 12 27 27 H 1.08993 * 109.46872 * 298.74190 * 14 13 12 28 28 H 1.08997 * 109.35825 * 311.08456 * 15 13 12 29 29 H 1.08995 * 109.36061 * 70.80949 * 15 13 12 30 30 H 1.08003 * 117.96036 * 197.15301 * 16 15 13 31 31 H 1.08001 * 117.96816 * 179.52641 * 17 16 15 32 32 H 1.09003 * 109.35957 * 137.32288 * 18 17 16 33 33 H 1.09005 * 109.36042 * 257.03899 * 18 17 16 34 34 H 1.09002 * 109.80030 * 191.12215 * 19 18 17 35 35 H 1.08992 * 109.43715 * 70.51439 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5796 -1.6365 -1.1337 6 6 1.7935 -0.1782 -2.4797 7 7 1.3034 1.0369 -2.5940 8 14 2.1585 -1.1858 -4.0097 9 1 1.8109 -0.3951 -5.2177 10 1 3.6026 -1.5305 -4.0424 11 1 1.3524 -2.4326 -3.9852 12 7 2.0196 -0.6925 1.1995 13 6 2.5497 0.2642 2.1801 14 6 1.4681 1.2849 2.5395 15 6 3.7629 0.9865 1.5901 16 6 4.4712 1.7654 2.6596 17 6 4.3062 1.5705 3.9285 18 6 3.3763 0.5448 4.5077 19 6 2.9924 -0.4846 3.4436 20 1 -0.3634 -1.0239 -0.0881 21 1 -0.3633 0.4358 0.9307 22 1 -0.3633 0.5882 -0.8427 23 1 1.0760 1.5449 -1.7995 24 1 1.2956 -1.2648 1.6075 25 1 0.5996 0.7662 2.9456 26 1 1.8571 1.9797 3.2839 27 1 1.1770 1.8358 1.6452 28 1 4.4476 0.2536 1.1635 29 1 3.4316 1.6695 0.8080 30 1 5.1613 2.5368 2.3513 31 1 4.8733 2.1838 4.6132 32 1 3.8679 0.0401 5.3394 33 1 2.4733 1.0380 4.8675 34 1 2.1733 -1.1044 3.8081 35 1 3.8557 -1.1097 3.2156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306865639.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:22 Heat of formation + Delta-G solvation = -15.734105 kcal Electronic energy + Delta-G solvation = -14550.791364 eV Core-core repulsion = 12354.533546 eV Total energy + Delta-G solvation = -2196.257818 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.70377 -37.22304 -34.58844 -32.01833 -31.39583 -28.96458 -27.80408 -26.80426 -24.37294 -22.34692 -21.32317 -18.81587 -17.90249 -17.52978 -16.11177 -15.78565 -15.56084 -15.20591 -14.81486 -14.55976 -13.94248 -13.81220 -13.42974 -13.30176 -13.06422 -12.90233 -12.69551 -12.59479 -12.28176 -12.00220 -11.93981 -11.77411 -11.33822 -10.97307 -10.68893 -10.34175 -9.85774 -9.00624 -8.49991 -6.20415 1.42008 1.53586 1.61211 1.80633 2.59774 3.24009 3.43898 3.72782 3.94587 4.15792 4.27426 4.39629 4.48040 4.52050 4.58225 4.64902 4.73581 4.76367 4.81942 4.89205 4.98219 5.04091 5.12404 5.14780 5.22624 5.33533 5.44818 5.51972 5.79027 6.05405 6.08906 6.25079 6.59229 6.80613 6.91123 7.55780 8.83865 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047464 B = 0.008746 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.775901 B = 3200.829434 C = 3345.985817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.205 3.795 3 H 0.002 0.998 4 C -0.586 4.586 5 H 0.041 0.959 6 C -0.034 4.034 7 N -0.940 5.940 8 Si 1.111 2.889 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.273 1.273 12 N -0.677 5.677 13 C 0.112 3.888 14 C -0.168 4.168 15 C -0.071 4.071 16 C -0.165 4.165 17 C -0.149 4.149 18 C -0.087 4.087 19 C -0.101 4.101 20 H 0.042 0.958 21 H 0.045 0.955 22 H 0.031 0.969 23 H 0.256 0.744 24 H 0.330 0.670 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 -0.407 13.738 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.096 3.904 3 H 0.020 0.980 4 C -0.625 4.625 5 H 0.059 0.941 6 C -0.231 4.231 7 N -0.578 5.578 8 Si 0.934 3.066 9 H -0.211 1.211 10 H -0.203 1.203 11 H -0.198 1.198 12 N -0.307 5.307 13 C 0.021 3.979 14 C -0.227 4.227 15 C -0.108 4.108 16 C -0.184 4.184 17 C -0.167 4.167 18 C -0.124 4.124 19 C -0.139 4.139 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.148 0.852 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.471 -0.512 11.812 12.322 hybrid contribution -0.888 0.633 1.412 1.784 sum 2.583 0.121 13.224 13.474 Atomic orbital electron populations 1.22366 0.99844 1.00077 0.99178 1.19062 0.89706 0.92822 0.88774 0.97993 1.22327 1.37397 1.09953 0.92784 0.94069 1.27074 0.94684 0.96897 1.04492 1.70934 1.44184 1.10077 1.32652 0.82997 0.76972 0.74287 0.72341 1.21138 1.20254 1.19812 1.60711 1.40120 1.23535 1.06323 1.21003 0.93421 0.91459 0.92047 1.22561 0.99156 1.00113 1.00891 1.20328 0.96468 0.97535 0.96499 1.22062 1.00929 1.00458 0.94912 1.22261 0.99538 0.99428 0.95499 1.20532 0.98958 0.95156 0.97718 1.21573 1.01226 0.97674 0.93383 0.93889 0.93616 0.94999 0.93387 0.85184 0.92213 0.90684 0.95199 0.92671 0.94636 0.87536 0.85609 0.88787 0.89784 0.90813 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.30 8.46 71.98 0.61 -6.69 16 2 C 0.21 10.35 1.31 44.17 0.06 10.41 16 3 H 0.00 0.13 4.32 -2.39 -0.01 0.12 16 4 C -0.59 -33.78 8.76 25.60 0.22 -33.55 16 5 H 0.04 2.43 7.83 -2.91 -0.02 2.41 16 6 C -0.03 -1.98 5.23 84.66 0.44 -1.54 16 7 N -0.94 -57.94 13.12 21.45 0.28 -57.66 16 8 Si 1.11 51.96 29.92 68.60 2.05 54.02 16 9 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 N -0.68 -28.76 5.97 -451.39 -2.69 -31.46 16 13 C 0.11 3.95 0.70 3.67 0.00 3.95 16 14 C -0.17 -5.53 6.71 71.98 0.48 -5.05 16 15 C -0.07 -2.71 4.59 29.66 0.14 -2.58 16 16 C -0.17 -4.88 9.42 27.05 0.25 -4.62 16 17 C -0.15 -3.53 9.16 27.05 0.25 -3.28 16 18 C -0.09 -1.86 5.48 29.63 0.16 -1.70 16 19 C -0.10 -2.78 5.18 30.71 0.16 -2.62 16 20 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.04 1.85 6.58 -2.39 -0.02 1.83 16 22 H 0.03 1.63 6.50 -2.39 -0.02 1.62 16 23 H 0.26 15.90 5.98 -92.71 -0.55 15.34 16 24 H 0.33 12.88 8.16 -89.69 -0.73 12.15 16 25 H 0.06 1.78 7.90 -2.39 -0.02 1.76 16 26 H 0.07 2.14 5.68 -2.39 -0.01 2.12 16 27 H 0.03 1.14 6.16 -2.39 -0.01 1.13 16 28 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 1.59 6.63 -2.39 -0.02 1.57 16 30 H 0.11 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.65 6.90 -2.38 -0.02 1.63 16 34 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 35 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 Total: -1.00 -64.57 264.78 2.97 -61.61 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.55 Total: 20.77 kcal Atomic # 6 Polarization: -50.05 SS G_CDS: 2.78 Total: -47.27 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -2.41 Total: -89.12 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.05 Total: 54.02 kcal Total: -64.57 2.97 -61.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306865639.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.871 kcal (2) G-P(sol) polarization free energy of solvation -64.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds