Wall clock time and date at job start Mon Mar 30 2020 02:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46671 * 2 1 4 4 C 1.50692 * 109.47326 * 119.99896 * 2 1 3 5 5 H 1.08007 * 119.99794 * 120.00043 * 4 2 1 6 6 C 1.37879 * 120.00560 * 300.00002 * 4 2 1 7 7 N 1.31506 * 120.00559 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99575 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46948 * 89.99996 * 8 6 4 10 10 H 1.48499 * 109.47178 * 210.00023 * 8 6 4 11 11 H 1.48503 * 109.47074 * 330.00055 * 8 6 4 12 12 N 1.46899 * 109.46680 * 240.00295 * 2 1 3 13 13 C 1.46905 * 111.00124 * 110.67008 * 12 2 1 14 14 C 1.52992 * 109.64101 * 63.53036 * 13 12 2 15 15 C 1.53020 * 109.63853 * 303.11011 * 13 12 2 16 16 C 1.50164 * 110.09486 * 191.09651 * 15 13 12 17 17 C 1.29440 * 124.14968 * 16.71664 * 16 15 13 18 18 C 1.50078 * 124.07121 * 359.76034 * 17 16 15 19 19 C 1.53018 * 110.14714 * 17.13309 * 18 17 16 20 20 H 1.08991 * 109.47488 * 65.13695 * 1 2 3 21 21 H 1.09000 * 109.46924 * 185.14220 * 1 2 3 22 22 H 1.09003 * 109.46432 * 305.13551 * 1 2 3 23 23 H 0.96998 * 120.00526 * 180.02562 * 7 6 4 24 24 H 1.00898 * 110.99754 * 234.61765 * 12 2 1 25 25 H 1.09000 * 109.47505 * 55.44791 * 14 13 12 26 26 H 1.09005 * 109.47101 * 175.45018 * 14 13 12 27 27 H 1.09003 * 109.47476 * 295.44602 * 14 13 12 28 28 H 1.08995 * 109.36047 * 311.08875 * 15 13 12 29 29 H 1.09003 * 109.35836 * 70.67483 * 15 13 12 30 30 H 1.08006 * 117.89140 * 196.92610 * 16 15 13 31 31 H 1.07998 * 117.96817 * 179.78179 * 17 16 15 32 32 H 1.08995 * 109.35650 * 256.92058 * 18 17 16 33 33 H 1.09004 * 109.35558 * 137.34077 * 18 17 16 34 34 H 1.08995 * 109.64248 * 190.87804 * 19 18 17 35 35 H 1.09001 * 109.82070 * 70.35206 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8590 3.5565 8 14 0.6260 1.2799 2.6542 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9954 3.9071 11 1 0.8493 2.1774 1.4923 12 7 2.0196 -0.6924 -1.1995 13 6 2.6515 0.2513 -2.1312 14 6 3.8873 0.8712 -1.4760 15 6 1.6568 1.3542 -2.4995 16 6 2.1873 2.1655 -3.6464 17 6 3.1487 1.7826 -4.4239 18 6 3.8724 0.4753 -4.2849 19 6 3.0619 -0.4856 -3.4124 20 1 -0.3634 0.4320 -0.9323 21 1 -0.3633 -1.0235 0.0921 22 1 -0.3632 0.5915 0.8405 23 1 1.9037 -0.5278 4.4375 24 1 2.6544 -1.4371 -0.9533 25 1 4.5608 0.0792 -1.1486 26 1 4.3994 1.5088 -2.1967 27 1 3.5823 1.4673 -0.6160 28 1 0.7075 0.9030 -2.7882 29 1 1.4992 2.0015 -1.6368 30 1 1.7400 3.1309 -3.8319 31 1 3.4491 2.4453 -5.2220 32 1 4.8453 0.6480 -3.8247 33 1 4.0149 0.0345 -5.2716 34 1 3.6721 -1.3520 -3.1572 35 1 2.1709 -0.8105 -3.9497 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306865642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:31 Heat of formation + Delta-G solvation = 11.915986 kcal Electronic energy + Delta-G solvation = -14582.343968 eV Core-core repulsion = 12387.285148 eV Total energy + Delta-G solvation = -2195.058820 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.31232 -35.38943 -32.56681 -31.03385 -30.17413 -27.51330 -26.72013 -24.84809 -23.04015 -20.60900 -19.43549 -17.03239 -16.67822 -15.82904 -15.12804 -14.47470 -13.85365 -13.57590 -13.33475 -12.86153 -12.67432 -12.32123 -12.14478 -11.83393 -11.58120 -11.41787 -11.14921 -10.90572 -10.79721 -10.41135 -10.14054 -10.05005 -9.69117 -9.36760 -8.99989 -8.72492 -8.59601 -7.40074 -6.09744 -4.09179 2.49656 3.27857 3.36571 3.39079 4.39131 4.84360 4.97914 5.13241 5.24961 5.47099 5.53821 5.57034 5.75386 5.78749 5.96683 6.02126 6.22395 6.24139 6.30672 6.33629 6.46403 6.54446 6.61864 6.63287 6.75771 6.83329 6.98759 7.00362 7.16896 7.47171 7.60023 8.05272 8.40418 8.62865 8.95262 9.53433 11.03334 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047517 B = 0.009640 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.123685 B = 2903.967535 C = 3094.943536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.177 3.823 3 H 0.020 0.980 4 C -0.527 4.527 5 H 0.075 0.925 6 C 0.071 3.929 7 N -0.900 5.900 8 Si 0.891 3.109 9 H -0.279 1.279 10 H -0.299 1.299 11 H -0.268 1.268 12 N -0.674 5.674 13 C 0.116 3.884 14 C -0.175 4.175 15 C -0.081 4.081 16 C -0.143 4.143 17 C -0.166 4.166 18 C -0.088 4.088 19 C -0.104 4.104 20 H 0.031 0.969 21 H 0.053 0.947 22 H 0.031 0.969 23 H 0.264 0.736 24 H 0.340 0.660 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.261 4.841 -13.460 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.068 3.932 3 H 0.038 0.962 4 C -0.566 4.566 5 H 0.093 0.907 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.227 1.227 11 H -0.193 1.193 12 N -0.304 5.304 13 C 0.024 3.976 14 C -0.234 4.234 15 C -0.119 4.119 16 C -0.161 4.161 17 C -0.184 4.184 18 C -0.126 4.126 19 C -0.142 4.142 20 H 0.050 0.950 21 H 0.072 0.928 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.159 0.841 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.645 4.843 -13.570 14.423 hybrid contribution 0.197 1.080 0.797 1.356 sum 0.841 5.923 -12.774 14.105 Atomic orbital electron populations 1.22123 0.99009 1.00706 0.97628 1.19558 0.91452 0.94226 0.87926 0.96246 1.21413 1.32174 1.13689 0.89281 0.90699 1.24951 0.95615 0.96695 0.95820 1.69897 1.45595 1.40352 0.97933 0.86802 0.80755 0.83636 0.76634 1.20542 1.22670 1.19349 1.60751 1.41268 1.11929 1.16464 1.20848 0.92066 0.92135 0.92560 1.22564 0.98649 1.01338 1.00857 1.20607 0.98934 0.96181 0.96133 1.22148 0.97828 0.99301 0.96836 1.21955 0.98544 0.98110 0.99839 1.20476 0.98863 0.93638 0.99585 1.21575 0.99720 0.97391 0.95475 0.95021 0.92802 0.95046 0.92661 0.84080 0.92852 0.92924 0.92118 0.90191 0.91048 0.88497 0.88645 0.90973 0.91715 0.91954 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.87 37.16 0.33 -2.75 16 2 C 0.18 4.15 1.26 -68.87 -0.09 4.06 16 3 H 0.02 0.48 3.89 -51.93 -0.20 0.28 16 4 C -0.53 -14.61 9.19 -34.44 -0.32 -14.93 16 5 H 0.08 2.23 7.59 -52.48 -0.40 1.84 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 8 Si 0.89 22.25 24.32 -169.99 -4.13 18.11 16 9 H -0.28 -6.82 6.91 56.52 0.39 -6.43 16 10 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 11 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 12 N -0.67 -13.63 6.02 -94.03 -0.57 -14.20 16 13 C 0.12 1.98 0.69 -131.39 -0.09 1.89 16 14 C -0.18 -3.05 7.75 37.15 0.29 -2.76 16 15 C -0.08 -1.34 3.90 -28.13 -0.11 -1.45 16 16 C -0.14 -1.98 9.46 -35.85 -0.34 -2.32 16 17 C -0.17 -2.11 9.18 -35.89 -0.33 -2.44 16 18 C -0.09 -1.09 5.48 -28.17 -0.15 -1.25 16 19 C -0.10 -1.50 5.24 -26.52 -0.14 -1.64 16 20 H 0.03 0.62 6.99 -51.93 -0.36 0.26 16 21 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 22 H 0.03 0.72 3.42 -51.93 -0.18 0.55 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.34 7.07 7.82 -39.29 -0.31 6.77 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.81 5.57 -51.93 -0.29 0.52 16 27 H 0.06 1.19 6.55 -51.93 -0.34 0.85 16 28 H 0.08 1.34 7.54 -51.93 -0.39 0.95 16 29 H 0.07 1.28 6.79 -51.93 -0.35 0.93 16 30 H 0.10 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.10 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.07 0.88 6.82 -51.93 -0.35 0.53 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 LS Contribution 259.41 15.07 3.91 3.91 Total: -1.00 -29.01 259.41 -6.38 -35.38 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.31 Total: 5.12 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -1.05 Total: -21.62 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.21 Total: -40.91 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.13 Total: 18.11 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.01 -6.38 -35.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306865642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.301 kcal (2) G-P(sol) polarization free energy of solvation -29.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds