Wall clock time and date at job start Mon Mar 30 2020 02:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46671 * 2 1 4 4 C 1.50692 * 109.47326 * 119.99896 * 2 1 3 5 5 H 1.08007 * 119.99794 * 120.00043 * 4 2 1 6 6 C 1.37879 * 120.00560 * 300.00002 * 4 2 1 7 7 N 1.31506 * 120.00559 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99575 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46948 * 89.99996 * 8 6 4 10 10 H 1.48499 * 109.47178 * 210.00023 * 8 6 4 11 11 H 1.48503 * 109.47074 * 330.00055 * 8 6 4 12 12 N 1.46899 * 109.46680 * 240.00295 * 2 1 3 13 13 C 1.46905 * 111.00124 * 110.67008 * 12 2 1 14 14 C 1.52992 * 109.64101 * 63.53036 * 13 12 2 15 15 C 1.53020 * 109.63853 * 303.11011 * 13 12 2 16 16 C 1.50164 * 110.09486 * 191.09651 * 15 13 12 17 17 C 1.29440 * 124.14968 * 16.71664 * 16 15 13 18 18 C 1.50078 * 124.07121 * 359.76034 * 17 16 15 19 19 C 1.53018 * 110.14714 * 17.13309 * 18 17 16 20 20 H 1.08991 * 109.47488 * 65.13695 * 1 2 3 21 21 H 1.09000 * 109.46924 * 185.14220 * 1 2 3 22 22 H 1.09003 * 109.46432 * 305.13551 * 1 2 3 23 23 H 0.96998 * 120.00526 * 180.02562 * 7 6 4 24 24 H 1.00898 * 110.99754 * 234.61765 * 12 2 1 25 25 H 1.09000 * 109.47505 * 55.44791 * 14 13 12 26 26 H 1.09005 * 109.47101 * 175.45018 * 14 13 12 27 27 H 1.09003 * 109.47476 * 295.44602 * 14 13 12 28 28 H 1.08995 * 109.36047 * 311.08875 * 15 13 12 29 29 H 1.09003 * 109.35836 * 70.67483 * 15 13 12 30 30 H 1.08006 * 117.89140 * 196.92610 * 16 15 13 31 31 H 1.07998 * 117.96817 * 179.78179 * 17 16 15 32 32 H 1.08995 * 109.35650 * 256.92058 * 18 17 16 33 33 H 1.09004 * 109.35558 * 137.34077 * 18 17 16 34 34 H 1.08995 * 109.64248 * 190.87804 * 19 18 17 35 35 H 1.09001 * 109.82070 * 70.35206 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8590 3.5565 8 14 0.6260 1.2799 2.6542 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9954 3.9071 11 1 0.8493 2.1774 1.4923 12 7 2.0196 -0.6924 -1.1995 13 6 2.6515 0.2513 -2.1312 14 6 3.8873 0.8712 -1.4760 15 6 1.6568 1.3542 -2.4995 16 6 2.1873 2.1655 -3.6464 17 6 3.1487 1.7826 -4.4239 18 6 3.8724 0.4753 -4.2849 19 6 3.0619 -0.4856 -3.4124 20 1 -0.3634 0.4320 -0.9323 21 1 -0.3633 -1.0235 0.0921 22 1 -0.3632 0.5915 0.8405 23 1 1.9037 -0.5278 4.4375 24 1 2.6544 -1.4371 -0.9533 25 1 4.5608 0.0792 -1.1486 26 1 4.3994 1.5088 -2.1967 27 1 3.5823 1.4673 -0.6160 28 1 0.7075 0.9030 -2.7882 29 1 1.4992 2.0015 -1.6368 30 1 1.7400 3.1309 -3.8319 31 1 3.4491 2.4453 -5.2220 32 1 4.8453 0.6480 -3.8247 33 1 4.0149 0.0345 -5.2716 34 1 3.6721 -1.3520 -3.1572 35 1 2.1709 -0.8105 -3.9497 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306865642.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:30 Heat of formation + Delta-G solvation = -7.431696 kcal Electronic energy + Delta-G solvation = -14583.182946 eV Core-core repulsion = 12387.285148 eV Total energy + Delta-G solvation = -2195.897799 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62802 -37.00151 -34.47015 -32.58788 -31.47472 -29.08885 -28.09075 -26.90883 -24.23587 -22.18092 -20.97079 -19.00883 -17.87181 -17.19027 -17.04241 -15.74456 -15.35469 -15.23825 -14.82151 -14.56258 -14.21814 -13.77777 -13.59407 -13.36453 -13.14461 -12.93644 -12.68039 -12.62397 -12.30900 -12.02103 -11.76504 -11.60760 -11.17351 -11.00139 -10.88618 -10.77112 -9.78785 -9.07777 -8.32785 -6.36225 1.28668 1.32293 1.42772 1.49081 2.28984 3.02883 3.44761 3.78686 3.99952 4.21041 4.33292 4.45919 4.54192 4.59396 4.62611 4.71524 4.79090 4.83224 4.88905 4.97546 5.06334 5.12367 5.15488 5.16635 5.25643 5.38067 5.50118 5.57487 5.67907 5.85471 6.07156 6.13962 6.48968 6.67688 6.89825 7.30858 8.83534 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047517 B = 0.009640 C = 0.009045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.123685 B = 2903.967535 C = 3094.943536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.186 3.814 3 H 0.016 0.984 4 C -0.528 4.528 5 H 0.039 0.961 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.267 1.267 10 H -0.299 1.299 11 H -0.251 1.251 12 N -0.673 5.673 13 C 0.109 3.891 14 C -0.168 4.168 15 C -0.079 4.079 16 C -0.161 4.161 17 C -0.154 4.154 18 C -0.089 4.089 19 C -0.099 4.099 20 H 0.058 0.942 21 H 0.045 0.955 22 H 0.026 0.974 23 H 0.265 0.735 24 H 0.334 0.666 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 6.350 -15.851 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.076 3.924 3 H 0.033 0.967 4 C -0.567 4.567 5 H 0.057 0.943 6 C -0.183 4.183 7 N -0.587 5.587 8 Si 0.776 3.224 9 H -0.193 1.193 10 H -0.226 1.226 11 H -0.176 1.176 12 N -0.303 5.303 13 C 0.018 3.982 14 C -0.227 4.227 15 C -0.116 4.116 16 C -0.179 4.179 17 C -0.172 4.172 18 C -0.126 4.126 19 C -0.137 4.137 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.152 0.848 25 H 0.062 0.938 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.370 6.354 -15.993 17.213 hybrid contribution 0.374 0.518 1.486 1.617 sum 0.744 6.871 -14.507 16.070 Atomic orbital electron populations 1.22050 0.97895 1.00384 0.98842 1.19371 0.92246 0.93475 0.87310 0.96660 1.21731 1.31106 1.12565 0.91276 0.94313 1.25778 0.97154 0.99855 0.95483 1.70037 1.47617 1.42463 0.98576 0.85852 0.79334 0.80154 0.77037 1.19316 1.22647 1.17569 1.60783 1.41815 1.12318 1.15354 1.21059 0.92040 0.92247 0.92904 1.22490 0.98833 1.00999 1.00374 1.20520 0.98646 0.95761 0.96666 1.22105 0.99240 0.99993 0.96604 1.22223 0.97230 0.98156 0.99594 1.20535 0.98460 0.93174 1.00406 1.21544 1.00154 0.97782 0.94265 0.92332 0.93616 0.95506 0.92563 0.84842 0.93755 0.90502 0.94899 0.90775 0.93031 0.86862 0.85937 0.90434 0.89152 0.91879 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.87 71.98 0.64 -5.22 16 2 C 0.19 8.67 1.26 44.17 0.06 8.72 16 3 H 0.02 0.76 3.89 -2.39 -0.01 0.75 16 4 C -0.53 -30.04 9.19 25.60 0.24 -29.80 16 5 H 0.04 2.42 7.59 -2.91 -0.02 2.40 16 6 C 0.02 0.88 5.45 84.66 0.46 1.34 16 7 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 8 Si 0.95 45.78 24.32 68.60 1.67 47.45 16 9 H -0.27 -12.35 6.91 99.48 0.69 -11.66 16 10 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 11 H -0.25 -11.36 6.53 99.48 0.65 -10.71 16 12 N -0.67 -27.14 6.02 -451.41 -2.72 -29.86 16 13 C 0.11 3.59 0.69 3.66 0.00 3.59 16 14 C -0.17 -5.72 7.75 71.98 0.56 -5.17 16 15 C -0.08 -2.45 3.90 29.69 0.12 -2.33 16 16 C -0.16 -3.96 9.46 27.07 0.26 -3.71 16 17 C -0.15 -3.26 9.18 27.04 0.25 -3.01 16 18 C -0.09 -1.86 5.48 29.66 0.16 -1.69 16 19 C -0.10 -2.65 5.24 30.73 0.16 -2.49 16 20 H 0.06 2.22 6.99 -2.39 -0.02 2.20 16 21 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.03 1.18 3.42 -2.39 -0.01 1.17 16 23 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 24 H 0.33 14.14 7.82 -89.70 -0.70 13.44 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 2.20 5.57 -2.38 -0.01 2.19 16 27 H 0.03 1.28 6.55 -2.39 -0.02 1.26 16 28 H 0.07 2.35 7.54 -2.39 -0.02 2.33 16 29 H 0.05 1.79 6.79 -2.39 -0.02 1.77 16 30 H 0.11 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.08 1.59 6.82 -2.39 -0.02 1.58 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 Total: -1.00 -62.96 259.41 2.44 -60.52 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.29 Total: 20.82 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 2.89 Total: -39.77 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -2.42 Total: -89.02 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Total: -62.96 2.44 -60.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306865642.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.086 kcal (2) G-P(sol) polarization free energy of solvation -62.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds