Wall clock time and date at job start Mon Mar 30 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29446 * 1 3 3 Si 1.86799 * 120.00511 * 2 1 4 4 H 1.48503 * 109.47175 * 270.00290 * 3 2 1 5 5 H 1.48507 * 109.46998 * 29.99859 * 3 2 1 6 6 H 1.48500 * 109.47229 * 149.99804 * 3 2 1 7 7 C 1.46666 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00134 * 195.37271 * 7 2 1 9 9 C 1.39647 * 119.99672 * 15.36252 * 7 2 1 10 10 C 1.46719 * 121.00793 * 41.47220 * 9 7 2 11 11 O 1.35005 * 120.31968 * 359.69677 * 10 9 7 12 12 N 1.32334 * 119.35611 * 179.72648 * 10 9 7 13 13 C 1.31798 * 121.74415 * 359.97438 * 12 10 9 14 14 C 1.38856 * 122.23886 * 0.02562 * 13 12 10 15 15 C 1.36540 * 120.39925 * 359.97438 * 14 13 12 16 16 N 1.48008 * 120.86124 * 180.02562 * 15 14 13 17 17 O 1.31700 * 120.00065 * 5.73762 * 16 15 14 18 18 O 1.31709 * 120.00109 * 185.73359 * 16 15 14 19 19 H 0.97006 * 119.99538 * 0.02562 * 1 2 3 20 20 H 0.96700 * 113.99778 * 95.15257 * 11 10 9 21 21 H 1.07998 * 118.88156 * 180.02562 * 13 12 10 22 22 H 1.08004 * 119.80045 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2945 0.0000 0.0000 3 14 2.2286 1.6176 0.0000 4 1 2.4761 2.0464 -1.4001 5 1 1.4261 2.6527 0.7000 6 1 3.5261 1.4400 0.7001 7 6 2.0278 -1.2702 -0.0006 8 1 3.0788 -1.2871 0.2474 9 6 1.3669 -2.4578 -0.3215 10 6 0.3988 -2.5102 -1.4228 11 8 0.1260 -1.4019 -2.1437 12 7 -0.2046 -3.6543 -1.7022 13 6 0.0405 -4.7530 -1.0167 14 6 0.9428 -4.7821 0.0383 15 6 1.6159 -3.6515 0.4032 16 7 2.5803 -3.6710 1.5257 17 8 2.8835 -4.8098 2.1137 18 8 3.1354 -2.5495 1.9366 19 1 -0.4850 0.8401 -0.0004 20 1 0.6428 -1.3248 -2.9574 21 1 -0.4781 -5.6617 -1.2847 22 1 1.1139 -5.7047 0.5731 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306879732.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:25 Heat of formation + Delta-G solvation = -20.652366 kcal Electronic energy + Delta-G solvation = -13611.771465 eV Core-core repulsion = 10942.375180 eV Total energy + Delta-G solvation = -2669.396285 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.93329 -38.86600 -37.58983 -36.31765 -34.54499 -33.50809 -31.59105 -28.42265 -26.67445 -23.91504 -22.98058 -20.33519 -19.69545 -18.60623 -17.81516 -17.53571 -16.81723 -16.29755 -16.01545 -15.82294 -14.85441 -14.27087 -13.74440 -13.63252 -13.27062 -12.95935 -12.43009 -12.05664 -11.60988 -11.51393 -11.33642 -11.24750 -10.89486 -10.37632 -9.80276 -9.41398 -7.09556 -1.19422 0.35311 0.72200 1.12684 1.32163 1.43655 1.55208 2.06408 2.23243 2.72044 2.96880 3.93083 4.08129 4.23129 4.35283 4.58964 4.73481 4.99710 5.33332 5.50147 5.66578 5.75656 5.98432 6.71078 6.92145 7.12371 7.47903 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.028623 B = 0.016046 C = 0.010801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.990355 B = 1744.510933 C = 2591.758849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.669 5.669 2 C 0.016 3.984 3 Si 1.009 2.991 4 H -0.229 1.229 5 H -0.250 1.250 6 H -0.261 1.261 7 C -0.222 4.222 8 H 0.119 0.881 9 C -0.026 4.026 10 C 0.342 3.658 11 O -0.452 6.452 12 N -0.502 5.502 13 C 0.014 3.986 14 C -0.117 4.117 15 C -0.083 4.083 16 N 0.033 4.967 17 O -0.427 6.427 18 O -0.353 6.353 19 H 0.332 0.668 20 H 0.405 0.595 21 H 0.186 0.814 22 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 6.701 -7.818 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.290 5.290 2 C -0.218 4.218 3 Si 0.823 3.177 4 H -0.151 1.151 5 H -0.173 1.173 6 H -0.184 1.184 7 C -0.253 4.253 8 H 0.136 0.864 9 C -0.035 4.035 10 C 0.140 3.860 11 O -0.259 6.259 12 N -0.223 5.223 13 C -0.128 4.128 14 C -0.138 4.138 15 C -0.194 4.194 16 N 0.422 4.578 17 O -0.551 6.551 18 O -0.492 6.492 19 H 0.147 0.853 20 H 0.265 0.735 21 H 0.203 0.797 22 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.335 6.506 -7.967 10.813 hybrid contribution 1.380 0.029 1.031 1.723 sum -1.954 6.535 -6.936 9.728 Atomic orbital electron populations 1.68878 1.10522 1.35914 1.13641 1.28835 0.95798 1.04824 0.92387 0.84781 0.78883 0.72182 0.81822 1.15147 1.17295 1.18437 1.22662 0.97978 0.90619 1.14042 0.86374 1.19442 0.95653 0.92574 0.95801 1.20744 0.90177 0.85204 0.89869 1.84650 1.65600 1.36629 1.38978 1.67076 1.23294 0.99562 1.32368 1.22110 1.00086 0.96196 0.94363 1.21205 0.96838 0.97217 0.98493 1.20202 1.04206 0.99308 0.95645 1.49613 1.03471 1.00642 1.04067 1.96001 1.76474 1.16007 1.66584 1.95969 1.59522 1.17608 1.76138 0.85347 0.73502 0.79696 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -25.84 11.35 23.24 0.26 -25.57 14 2 C 0.02 0.60 4.82 87.25 0.42 1.02 14 3 Si 1.01 27.25 29.67 68.60 2.04 29.29 14 4 H -0.23 -5.31 7.11 99.48 0.71 -4.60 14 5 H -0.25 -6.21 7.11 99.48 0.71 -5.51 14 6 H -0.26 -7.80 7.11 99.48 0.71 -7.09 14 7 C -0.22 -10.00 7.58 24.81 0.19 -9.81 14 8 H 0.12 5.59 6.45 -2.91 -0.02 5.57 14 9 C -0.03 -1.24 5.52 -19.83 -0.11 -1.35 14 10 C 0.34 14.44 7.49 86.84 0.65 15.09 14 11 O -0.45 -15.86 10.83 -82.77 -0.90 -16.75 14 12 N -0.50 -20.81 10.38 -302.47 -3.14 -23.95 14 13 C 0.01 0.56 11.12 84.85 0.94 1.51 14 14 C -0.12 -5.32 9.55 22.02 0.21 -5.11 14 15 C -0.08 -4.34 6.94 36.88 0.26 -4.09 14 16 N 0.03 1.97 4.98 -45.29 -0.23 1.75 14 17 O -0.43 -26.57 19.22 3.51 0.07 -26.50 14 18 O -0.35 -21.39 16.64 3.50 0.06 -21.33 14 19 H 0.33 10.62 8.27 -92.70 -0.77 9.86 14 20 H 0.41 9.73 9.06 -74.06 -0.67 9.06 14 21 H 0.19 5.66 8.06 -2.91 -0.02 5.63 14 22 H 0.13 5.85 7.62 -2.91 -0.02 5.83 14 Total: -1.00 -68.40 216.85 1.34 -67.06 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.62 Total: 18.75 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 2.56 Total: -2.73 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -3.10 Total: -47.77 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -0.77 Total: -64.58 kcal Atomic # 14 Polarization: 27.25 SS G_CDS: 2.04 Total: 29.29 kcal Total: -68.40 1.34 -67.06 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306879732.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.403 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds