Wall clock time and date at job start Mon Mar 30 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29509 * 1 3 3 Si 1.86807 * 120.00065 * 2 1 4 4 H 1.48490 * 109.47346 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46977 * 300.00296 * 3 2 1 6 6 H 1.48496 * 109.46838 * 59.99626 * 3 2 1 7 7 C 1.46535 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00081 * 165.12212 * 7 2 1 9 9 C 1.40349 * 119.99797 * 345.40408 * 7 2 1 10 10 C 1.41549 * 121.14485 * 336.51117 * 9 7 2 11 11 C 1.36451 * 119.02520 * 179.77556 * 10 9 7 12 12 N 1.48018 * 119.24442 * 180.23183 * 11 10 9 13 13 O 1.31697 * 120.00288 * 180.28547 * 12 11 10 14 14 O 1.31703 * 120.00054 * 0.28090 * 12 11 10 15 15 N 1.32114 * 121.51040 * 0.52110 * 11 10 9 16 16 C 1.31373 * 122.60861 * 359.73182 * 15 11 10 17 17 C 1.39369 * 120.72938 * 0.02562 * 16 15 11 18 18 O 1.35220 * 120.78973 * 180.02562 * 17 16 15 19 19 H 0.96999 * 119.99822 * 359.97438 * 1 2 3 20 20 H 1.07994 * 120.48466 * 0.02562 * 10 9 7 21 21 H 1.07997 * 119.63254 * 179.97438 * 16 15 11 22 22 H 0.96697 * 113.99859 * 275.07802 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 3.6890 1.3465 -0.0006 5 1 1.8703 2.3965 -1.2125 6 1 1.8703 2.3965 1.2124 7 6 2.0278 -1.2690 -0.0006 8 1 3.0807 -1.2845 -0.2407 9 6 1.3601 -2.4650 0.3052 10 6 0.1704 -2.4638 1.0722 11 6 -0.4458 -3.6514 1.3401 12 7 -1.6929 -3.6553 2.1374 13 8 -2.2970 -4.7935 2.4095 14 8 -2.1984 -2.5206 2.5747 15 7 0.0482 -4.7983 0.9089 16 6 1.1501 -4.8717 0.1973 17 6 1.8587 -3.7197 -0.1391 18 8 2.9926 -3.7937 -0.8719 19 1 -0.4850 0.8401 0.0004 20 1 -0.2456 -1.5362 1.4366 21 1 1.5111 -5.8355 -0.1300 22 1 3.7876 -3.9680 -0.3498 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306919774.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:05 Heat of formation + Delta-G solvation = 2.059802 kcal Electronic energy + Delta-G solvation = -13278.055451 eV Core-core repulsion = 10609.644040 eV Total energy + Delta-G solvation = -2668.411411 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.49511 -37.73843 -36.08343 -34.67693 -33.50670 -31.28678 -30.03099 -26.33348 -25.53266 -22.48413 -21.31191 -18.71970 -17.62025 -17.34074 -16.75805 -15.92430 -15.21338 -14.98027 -14.47023 -13.90695 -13.24497 -12.53939 -12.22853 -12.03817 -11.71122 -11.19813 -10.80533 -10.58283 -10.51207 -10.20665 -9.95289 -9.86153 -8.81512 -8.57684 -8.32621 -7.52684 -5.14735 0.29320 2.00464 2.13952 2.23040 2.69708 2.78127 2.81103 3.40259 3.92222 4.71197 5.10920 5.26821 5.83054 5.93470 6.21645 6.36452 6.48489 6.71433 6.96252 7.25042 7.60840 7.62308 7.88047 7.95015 8.51591 8.82968 9.30804 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.029579 B = 0.012599 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.378128 B = 2221.828911 C = 3099.965457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.730 5.730 2 C 0.064 3.936 3 Si 0.934 3.066 4 H -0.250 1.250 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.395 4.395 8 H 0.105 0.895 9 C 0.084 3.916 10 C -0.114 4.114 11 C 0.199 3.801 12 N -0.004 5.004 13 O -0.176 6.176 14 O -0.199 6.199 15 N -0.549 5.549 16 C 0.129 3.871 17 C -0.065 4.065 18 O -0.476 6.476 19 H 0.305 0.695 20 H 0.158 0.842 21 H 0.148 0.852 22 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.663 2.330 -0.413 6.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.350 5.350 2 C -0.167 4.167 3 Si 0.756 3.244 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.423 4.423 8 H 0.123 0.877 9 C 0.076 3.924 10 C -0.141 4.141 11 C -0.010 4.010 12 N 0.472 4.528 13 O -0.374 6.374 14 O -0.386 6.386 15 N -0.270 5.270 16 C -0.031 4.031 17 C -0.116 4.116 18 O -0.282 6.282 19 H 0.118 0.882 20 H 0.175 0.825 21 H 0.165 0.835 22 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.072 1.874 -0.995 5.498 hybrid contribution 0.516 1.212 0.388 1.374 sum 5.588 3.086 -0.607 6.412 Atomic orbital electron populations 1.69022 1.09120 1.32494 1.24406 1.27802 0.94849 1.03084 0.90969 0.85807 0.81043 0.78037 0.79562 1.17327 1.18911 1.18655 1.20949 0.97538 0.88637 1.35218 0.87716 1.17921 0.90994 0.93376 0.90075 1.21923 0.96470 0.96790 0.98934 1.19866 0.87386 0.92520 1.01256 1.50667 1.02371 1.01836 0.97899 1.96173 1.62920 1.15764 1.62516 1.96205 1.69452 1.16029 1.56869 1.65683 1.16276 1.26499 1.18528 1.22279 0.89837 0.97531 0.93405 1.19713 0.93671 0.92712 1.05475 1.84705 1.15147 1.93923 1.34412 0.88218 0.82478 0.83470 0.78681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -16.14 10.92 55.98 0.61 -15.53 14 2 C 0.06 1.33 5.41 -15.19 -0.08 1.24 14 3 Si 0.93 15.24 29.67 -169.99 -5.04 10.20 14 4 H -0.25 -4.00 7.11 56.52 0.40 -3.60 14 5 H -0.26 -4.27 7.11 56.52 0.40 -3.87 14 6 H -0.26 -4.22 7.11 56.52 0.40 -3.82 14 7 C -0.40 -8.84 9.09 -35.45 -0.32 -9.17 14 8 H 0.10 2.19 7.77 -52.48 -0.41 1.78 14 9 C 0.08 2.00 5.66 -106.35 -0.60 1.40 14 10 C -0.11 -2.82 8.32 -38.96 -0.32 -3.14 14 11 C 0.20 5.05 7.76 -146.62 -1.14 3.91 14 12 N 0.00 -0.10 4.98 32.60 0.16 0.06 14 13 O -0.18 -4.48 19.74 -31.57 -0.62 -5.10 14 14 O -0.20 -5.01 19.07 -31.57 -0.60 -5.62 14 15 N -0.55 -13.41 9.98 -10.47 -0.10 -13.51 14 16 C 0.13 2.77 11.17 -17.33 -0.19 2.58 14 17 C -0.07 -1.43 6.82 -37.67 -0.26 -1.69 14 18 O -0.48 -9.02 12.92 -17.36 -0.22 -9.25 14 19 H 0.30 5.91 8.27 -40.82 -0.34 5.58 14 20 H 0.16 3.96 5.58 -52.49 -0.29 3.67 14 21 H 0.15 2.62 8.06 -52.49 -0.42 2.20 14 22 H 0.36 4.96 9.06 45.56 0.41 5.38 14 LS Contribution 221.55 15.07 3.34 3.34 Total: -1.00 -27.71 221.55 -5.25 -32.96 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 0.16 Total: 7.30 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.92 Total: -4.86 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: 0.67 Total: -28.98 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.45 Total: -19.97 kcal Atomic # 14 Polarization: 15.24 SS G_CDS: -5.04 Total: 10.20 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -27.71 -5.25 -32.96 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306919774.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.020 kcal (2) G-P(sol) polarization free energy of solvation -27.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds