Wall clock time and date at job start Mon Mar 30 2020 03:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29600 * 1 3 3 Si 1.86798 * 120.00206 * 2 1 4 4 H 1.48501 * 109.47188 * 240.00095 * 3 2 1 5 5 H 1.48502 * 109.47232 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46958 * 119.99782 * 3 2 1 7 7 C 1.46340 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00360 * 180.02562 * 7 2 1 9 9 C 1.40920 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.40832 * 119.79316 * 179.97438 * 9 7 2 11 11 C 1.38585 * 119.08833 * 180.02562 * 10 9 7 12 12 N 1.48014 * 120.68781 * 179.97438 * 11 10 9 13 13 O 1.31702 * 119.99974 * 180.02562 * 12 11 10 14 14 O 1.31693 * 120.00176 * 0.02562 * 12 11 10 15 15 C 1.38451 * 118.62548 * 0.02562 * 11 10 9 16 16 C 1.40305 * 119.48832 * 0.27605 * 15 11 10 17 17 O 1.35571 * 119.54902 * 179.70118 * 16 15 11 18 18 N 1.31387 * 120.89260 * 359.41903 * 16 15 11 19 19 H 0.97003 * 119.99771 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.45426 * 0.02562 * 10 9 7 21 21 H 1.08002 * 120.25255 * 179.97438 * 15 11 10 22 22 H 0.96698 * 114.00025 * 89.99425 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2960 0.0000 0.0000 3 14 2.2301 1.6177 0.0000 4 1 3.0838 1.6963 -1.2125 5 1 1.2651 2.7465 0.0006 6 1 3.0837 1.6963 1.2125 7 6 2.0277 -1.2674 -0.0006 8 1 3.1076 -1.2674 -0.0001 9 6 1.3231 -2.4878 -0.0006 10 6 2.0317 -3.7048 -0.0017 11 6 1.3241 -4.8964 -0.0022 12 7 2.0328 -6.1959 -0.0039 13 8 1.3468 -7.3201 -0.0049 14 8 3.3493 -6.2279 -0.0044 15 6 -0.0595 -4.8462 -0.0022 16 6 -0.7054 -3.6007 -0.0075 17 8 -2.0602 -3.5501 -0.0136 18 7 -0.0151 -2.4828 -0.0011 19 1 -0.4850 0.8401 -0.0004 20 1 3.1117 -3.7095 -0.0021 21 1 -0.6371 -5.7588 -0.0030 22 1 -2.4572 -3.5338 0.8680 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307019558.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:57 Heat of formation + Delta-G solvation = 8.672396 kcal Electronic energy + Delta-G solvation = -13120.926241 eV Core-core repulsion = 10452.801573 eV Total energy + Delta-G solvation = -2668.124667 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.40098 -37.97437 -36.23755 -33.93696 -33.77088 -31.57094 -29.95158 -26.37694 -25.86000 -22.01207 -21.57308 -18.94596 -17.66506 -17.43754 -16.31601 -15.52424 -15.29235 -15.07499 -14.78726 -14.24199 -13.31398 -12.26575 -11.90139 -11.52579 -11.51314 -11.36614 -10.83542 -10.73027 -10.64504 -10.45394 -10.11572 -9.89600 -9.13147 -8.34114 -8.20752 -7.10880 -5.13321 0.09424 1.88850 2.07849 2.36959 2.78580 2.80276 2.82453 3.51404 4.01806 4.55668 5.11413 5.67566 5.80361 5.96019 6.03389 6.29718 6.48035 6.68321 6.71073 7.06246 7.52231 7.58150 7.76483 8.02598 8.38559 9.34636 9.60500 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.038363 B = 0.009995 C = 0.007957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.698640 B = 2800.591947 C = 3517.960350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.671 5.671 2 C 0.058 3.942 3 Si 0.926 3.074 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.386 4.386 8 H 0.104 0.896 9 C 0.252 3.748 10 C -0.212 4.212 11 C 0.087 3.913 12 N -0.009 5.009 13 O -0.194 6.194 14 O -0.190 6.190 15 C -0.314 4.314 16 C 0.358 3.642 17 O -0.486 6.486 18 N -0.486 5.486 19 H 0.291 0.709 20 H 0.135 0.865 21 H 0.130 0.870 22 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 2.496 1.664 3.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.287 5.287 2 C -0.176 4.176 3 Si 0.748 3.252 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.415 4.415 8 H 0.122 0.878 9 C 0.131 3.869 10 C -0.238 4.238 11 C -0.002 4.002 12 N 0.468 4.532 13 O -0.387 6.387 14 O -0.384 6.384 15 C -0.339 4.339 16 C 0.167 3.833 17 O -0.292 6.292 18 N -0.210 5.210 19 H 0.103 0.897 20 H 0.153 0.847 21 H 0.148 0.852 22 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.075 3.956 1.057 4.233 hybrid contribution 0.727 -0.656 0.455 1.080 sum -0.348 3.300 1.511 3.646 Atomic orbital electron populations 1.69442 1.08509 1.30374 1.20399 1.27638 0.94926 1.01984 0.93089 0.86054 0.80153 0.78181 0.80803 1.18062 1.19580 1.18077 1.21110 0.94667 0.87797 1.37943 0.87774 1.18109 0.86482 0.90948 0.91336 1.21982 1.01033 0.90213 1.10557 1.20198 0.91757 0.79243 1.09045 1.50859 1.02739 1.04917 0.94681 1.96186 1.66512 1.19866 1.56105 1.96191 0.89905 1.96368 1.55903 1.21067 0.91190 0.99487 1.22186 1.19102 0.83939 0.86982 0.93283 1.84677 1.15337 1.95982 1.33201 1.68057 1.07712 1.27059 1.18143 0.89667 0.84688 0.85185 0.75360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -15.30 11.60 55.97 0.65 -14.65 14 2 C 0.06 1.25 5.67 -15.24 -0.09 1.16 14 3 Si 0.93 15.55 29.64 -169.99 -5.04 10.52 14 4 H -0.26 -4.29 7.11 56.52 0.40 -3.89 14 5 H -0.27 -4.43 7.11 56.52 0.40 -4.03 14 6 H -0.26 -4.25 7.11 56.52 0.40 -3.85 14 7 C -0.39 -8.87 9.40 -35.31 -0.33 -9.21 14 8 H 0.10 2.15 7.94 -52.49 -0.42 1.73 14 9 C 0.25 6.18 6.56 -85.00 -0.56 5.62 14 10 C -0.21 -4.91 9.39 -38.47 -0.36 -5.27 14 11 C 0.09 2.03 6.92 -79.74 -0.55 1.48 14 12 N -0.01 -0.21 4.98 34.06 0.17 -0.05 14 13 O -0.19 -4.44 19.24 -31.57 -0.61 -5.05 14 14 O -0.19 -4.35 19.25 -31.56 -0.61 -4.96 14 15 C -0.31 -7.08 9.63 -38.73 -0.37 -7.45 14 16 C 0.36 8.22 7.75 -16.97 -0.13 8.09 14 17 O -0.49 -9.62 13.56 -18.41 -0.25 -9.87 14 18 N -0.49 -12.17 8.01 -11.11 -0.09 -12.26 14 19 H 0.29 5.87 8.27 -40.82 -0.34 5.53 14 20 H 0.14 2.91 7.67 -52.49 -0.40 2.51 14 21 H 0.13 2.75 7.66 -52.49 -0.40 2.35 14 22 H 0.39 5.58 9.06 45.56 0.41 5.99 14 LS Contribution 223.51 15.07 3.37 3.37 Total: -1.00 -27.45 223.51 -4.74 -32.19 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.06 Total: 6.35 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.39 Total: -5.58 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.73 Total: -26.96 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.46 Total: -19.89 kcal Atomic # 14 Polarization: 15.55 SS G_CDS: -5.04 Total: 10.52 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -27.45 -4.74 -32.19 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307019558.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.862 kcal (2) G-P(sol) polarization free energy of solvation -27.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds