Wall clock time and date at job start Mon Mar 30 2020 02:31:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08999 * 109.46820 * 2 1
4 4 C 1.50695 * 109.47256 * 120.00543 * 2 1 3
5 5 H 1.07999 * 120.00017 * 120.00567 * 4 2 1
6 6 C 1.37882 * 119.99823 * 300.00051 * 4 2 1
7 7 N 1.31507 * 120.00166 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99646 * 180.02562 * 6 4 2
9 9 H 1.48501 * 109.47137 * 60.00041 * 8 6 4
10 10 H 1.48501 * 109.46912 * 179.97438 * 8 6 4
11 11 H 1.48496 * 109.47033 * 299.99910 * 8 6 4
12 12 N 1.46896 * 109.46866 * 240.00768 * 2 1 3
13 13 C 1.46781 * 111.00063 * 306.04140 * 12 2 1
14 14 C 1.52996 * 109.90237 * 188.89052 * 13 12 2
15 15 C 1.53332 * 109.19744 * 297.74527 * 14 13 12
16 16 C 1.53242 * 108.50195 * 54.28341 * 15 14 13
17 17 C 1.52786 * 117.71750 * 93.86817 * 16 15 14
18 18 C 1.52763 * 117.77818 * 162.80691 * 16 15 14
19 19 C 1.47050 * 111.00308 * 70.25507 * 12 2 1
20 20 H 1.09002 * 109.46511 * 179.97438 * 1 2 3
21 21 H 1.08998 * 109.46955 * 299.99493 * 1 2 3
22 22 H 1.08999 * 109.47531 * 59.99745 * 1 2 3
23 23 H 0.97006 * 120.00046 * 180.02562 * 7 6 4
24 24 H 1.08997 * 109.39901 * 68.75843 * 13 12 2
25 25 H 1.09005 * 109.33152 * 308.97652 * 13 12 2
26 26 H 1.08994 * 109.52380 * 57.66229 * 14 13 12
27 27 H 1.09000 * 109.51972 * 177.83464 * 14 13 12
28 28 H 1.08997 * 109.63437 * 173.98558 * 15 14 13
29 29 H 1.09002 * 109.63539 * 294.58061 * 15 14 13
30 30 H 1.08995 * 117.50812 * 215.23976 * 17 16 15
31 31 H 1.09002 * 117.50794 * 0.30759 * 17 16 15
32 32 H 1.09001 * 117.50299 * 359.80554 * 18 16 15
33 33 H 1.09002 * 117.50124 * 144.84978 * 18 16 15
34 34 H 1.08994 * 109.56997 * 297.64743 * 19 12 2
35 35 H 1.08999 * 109.56664 * 57.87947 * 19 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7105 1.2303
5 1 2.6534 -1.5885 1.1312
6 6 1.6993 -0.2395 2.4827
7 7 0.9428 0.8294 2.6035
8 14 2.3226 -1.1199 4.0078
9 1 3.8076 -1.1192 4.0075
10 1 1.8280 -0.4197 5.2204
11 1 1.8282 -2.5201 4.0079
12 7 2.0196 -0.6923 -1.1995
13 6 1.4348 -2.0342 -1.3079
14 6 2.1216 -2.8124 -2.4320
15 6 1.8788 -2.0934 -3.7643
16 6 2.3345 -0.6373 -3.6212
17 6 3.7587 -0.2926 -4.0537
18 6 2.5684 0.1644 -4.9003
19 6 1.7580 0.1011 -2.4097
20 1 -0.3632 -1.0277 -0.0005
21 1 -0.3633 0.5137 0.8900
22 1 -0.3634 0.5139 -0.8899
23 1 0.7087 1.1609 3.4845
24 1 0.3701 -1.9487 -1.5249
25 1 1.5707 -2.5643 -0.3652
26 1 3.1926 -2.8655 -2.2367
27 1 1.7094 -3.8203 -2.4818
28 1 2.4520 -2.5806 -4.5531
29 1 0.8168 -2.1225 -4.0081
30 1 4.2893 0.4670 -3.4797
31 1 4.3751 -1.1011 -4.4469
32 1 2.4018 -0.3434 -5.8502
33 1 2.3160 1.2247 -4.8830
34 1 0.6831 0.2285 -2.5374
35 1 2.2327 1.0777 -2.3155
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307048436.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:31:22
Heat of formation + Delta-G solvation = 2.957170 kcal
Electronic energy + Delta-G solvation = -14476.177141 eV
Core-core repulsion = 12280.729837 eV
Total energy + Delta-G solvation = -2195.447304 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 209.148 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.48812 -37.59680 -34.91101 -33.35320 -30.35486 -28.41616 -27.26737 -25.21368
-23.42472 -22.94289 -21.26517 -19.31413 -18.15674 -17.05412 -16.22383 -16.05321
-15.64616 -15.34027 -14.61923 -14.43003 -14.28284 -13.62126 -13.45858 -12.97837
-12.81542 -12.69889 -12.57167 -12.32704 -12.24342 -12.13036 -11.86400 -11.70742
-11.11467 -11.02881 -10.75233 -10.49673 -10.42129 -8.79055 -8.10652 -6.21734
1.42179 1.44128 1.51746 2.42568 2.89104 3.17864 3.50668 3.78209
3.91675 4.10673 4.19428 4.31019 4.47572 4.66085 4.71498 4.74812
4.79436 4.84040 4.86422 4.94177 5.05127 5.09532 5.11601 5.17386
5.24090 5.35842 5.43144 5.51156 5.53904 5.70247 5.80314 6.22756
6.54002 6.78418 6.92231 7.47504 8.95424
Molecular weight = 209.15amu
Principal moments of inertia in cm(-1)
A = 0.047285 B = 0.008653 C = 0.008278
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 592.011103 B = 3234.926457 C = 3381.714327
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.214 3.786
3 H 0.001 0.999
4 C -0.512 4.512
5 H 0.055 0.945
6 C 0.009 3.991
7 N -0.923 5.923
8 Si 0.960 3.040
9 H -0.273 1.273
10 H -0.284 1.284
11 H -0.271 1.271
12 N -0.536 5.536
13 C 0.065 3.935
14 C -0.108 4.108
15 C -0.073 4.073
16 C -0.135 4.135
17 C -0.164 4.164
18 C -0.160 4.160
19 C 0.093 3.907
20 H 0.031 0.969
21 H 0.061 0.939
22 H 0.020 0.980
23 H 0.261 0.739
24 H 0.017 0.983
25 H 0.056 0.944
26 H 0.060 0.940
27 H 0.080 0.920
28 H 0.084 0.916
29 H 0.063 0.937
30 H 0.079 0.921
31 H 0.105 0.895
32 H 0.114 0.886
33 H 0.091 0.909
34 H 0.020 0.980
35 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.752 -4.821 -12.462 13.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.107 3.893
3 H 0.019 0.981
4 C -0.551 4.551
5 H 0.074 0.926
6 C -0.189 4.189
7 N -0.563 5.563
8 Si 0.786 3.214
9 H -0.199 1.199
10 H -0.209 1.209
11 H -0.196 1.196
12 N -0.260 5.260
13 C -0.063 4.063
14 C -0.145 4.145
15 C -0.110 4.110
16 C -0.135 4.135
17 C -0.201 4.201
18 C -0.197 4.197
19 C -0.035 4.035
20 H 0.051 0.949
21 H 0.080 0.920
22 H 0.039 0.961
23 H 0.070 0.930
24 H 0.035 0.965
25 H 0.074 0.926
26 H 0.079 0.921
27 H 0.099 0.901
28 H 0.103 0.897
29 H 0.082 0.918
30 H 0.098 0.902
31 H 0.123 0.877
32 H 0.132 0.868
33 H 0.110 0.890
34 H 0.038 0.962
35 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 2.186 -4.760 -12.270 13.341
hybrid contribution -0.776 0.226 1.215 1.459
sum 1.410 -4.535 -11.055 12.031
Atomic orbital electron populations
1.22182 1.00439 0.99098 0.99729 1.19049 0.89943 0.92722 0.87593
0.98141 1.21319 1.30515 1.12397 0.90847 0.92647 1.25722 0.95424
0.95850 1.01899 1.70010 1.37934 1.24268 1.24060 0.85577 0.78683
0.78690 0.78465 1.19854 1.20928 1.19567 1.62160 1.59075 1.02881
1.01859 1.21892 0.95168 0.90364 0.98923 1.21577 1.00835 0.98289
0.93840 1.21152 1.00959 0.91641 0.97234 1.21444 1.00491 0.96677
0.94885 1.22929 0.90658 1.03425 1.03105 1.23040 1.01973 1.00171
0.94536 1.21560 0.96880 0.95659 0.89371 0.94950 0.92005 0.96073
0.92969 0.96523 0.92576 0.92135 0.90102 0.89731 0.91814 0.90227
0.87699 0.86767 0.89040 0.96219 0.92968
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -7.84 8.23 71.98 0.59 -7.25 16
2 C 0.21 11.31 2.31 44.17 0.10 11.41 16
3 H 0.00 0.04 8.04 -2.39 -0.02 0.02 16
4 C -0.51 -28.96 7.83 25.60 0.20 -28.76 16
5 H 0.06 3.13 7.16 -2.91 -0.02 3.11 16
6 C 0.01 0.52 5.30 84.66 0.45 0.97 16
7 N -0.92 -54.18 11.32 21.45 0.24 -53.94 16
8 Si 0.96 44.48 29.54 68.60 2.03 46.51 16
9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16
10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16
11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
12 N -0.54 -23.85 4.60 -875.03 -4.02 -27.88 16
13 C 0.06 2.57 4.36 86.32 0.38 2.95 16
14 C -0.11 -3.26 6.12 30.70 0.19 -3.07 16
15 C -0.07 -1.89 5.76 30.79 0.18 -1.72 16
16 C -0.13 -3.97 2.11 -52.20 -0.11 -4.08 16
17 C -0.16 -4.31 9.92 30.54 0.30 -4.01 16
18 C -0.16 -3.70 10.00 30.53 0.31 -3.40 16
19 C 0.09 3.57 4.94 86.32 0.43 3.99 16
20 H 0.03 1.57 6.52 -2.39 -0.02 1.55 16
21 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16
22 H 0.02 0.95 6.75 -2.39 -0.02 0.94 16
23 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16
24 H 0.02 0.67 6.75 -2.39 -0.02 0.65 16
25 H 0.06 2.47 6.65 -2.38 -0.02 2.46 16
26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
28 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16
29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16
32 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16
33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16
34 H 0.02 0.77 6.74 -2.39 -0.02 0.76 16
35 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16
Total: -1.00 -60.96 269.76 2.30 -58.67
By element:
Atomic # 1 Polarization: 8.57 SS G_CDS: 1.04 Total: 9.61 kcal
Atomic # 6 Polarization: -35.97 SS G_CDS: 3.01 Total: -32.96 kcal
Atomic # 7 Polarization: -78.04 SS G_CDS: -3.78 Total: -81.82 kcal
Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal
Total: -60.96 2.30 -58.67 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307048436.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.623 kcal
(2) G-P(sol) polarization free energy of solvation -60.964 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.659 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.957 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds