Wall clock time and date at job start Mon Mar 30 2020 02:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46820 * 2 1 4 4 C 1.50695 * 109.47256 * 120.00543 * 2 1 3 5 5 H 1.07999 * 120.00017 * 120.00567 * 4 2 1 6 6 C 1.37882 * 119.99823 * 300.00051 * 4 2 1 7 7 N 1.31507 * 120.00166 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99646 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47137 * 60.00041 * 8 6 4 10 10 H 1.48501 * 109.46912 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47033 * 299.99910 * 8 6 4 12 12 N 1.46896 * 109.46866 * 240.00768 * 2 1 3 13 13 C 1.46781 * 111.00063 * 306.04140 * 12 2 1 14 14 C 1.52996 * 109.90237 * 188.89052 * 13 12 2 15 15 C 1.53332 * 109.19744 * 297.74527 * 14 13 12 16 16 C 1.53242 * 108.50195 * 54.28341 * 15 14 13 17 17 C 1.52786 * 117.71750 * 93.86817 * 16 15 14 18 18 C 1.52763 * 117.77818 * 162.80691 * 16 15 14 19 19 C 1.47050 * 111.00308 * 70.25507 * 12 2 1 20 20 H 1.09002 * 109.46511 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.46955 * 299.99493 * 1 2 3 22 22 H 1.08999 * 109.47531 * 59.99745 * 1 2 3 23 23 H 0.97006 * 120.00046 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.39901 * 68.75843 * 13 12 2 25 25 H 1.09005 * 109.33152 * 308.97652 * 13 12 2 26 26 H 1.08994 * 109.52380 * 57.66229 * 14 13 12 27 27 H 1.09000 * 109.51972 * 177.83464 * 14 13 12 28 28 H 1.08997 * 109.63437 * 173.98558 * 15 14 13 29 29 H 1.09002 * 109.63539 * 294.58061 * 15 14 13 30 30 H 1.08995 * 117.50812 * 215.23976 * 17 16 15 31 31 H 1.09002 * 117.50794 * 0.30759 * 17 16 15 32 32 H 1.09001 * 117.50299 * 359.80554 * 18 16 15 33 33 H 1.09002 * 117.50124 * 144.84978 * 18 16 15 34 34 H 1.08994 * 109.56997 * 297.64743 * 19 12 2 35 35 H 1.08999 * 109.56664 * 57.87947 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8294 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.8076 -1.1192 4.0075 10 1 1.8280 -0.4197 5.2204 11 1 1.8282 -2.5201 4.0079 12 7 2.0196 -0.6923 -1.1995 13 6 1.4348 -2.0342 -1.3079 14 6 2.1216 -2.8124 -2.4320 15 6 1.8788 -2.0934 -3.7643 16 6 2.3345 -0.6373 -3.6212 17 6 3.7587 -0.2926 -4.0537 18 6 2.5684 0.1644 -4.9003 19 6 1.7580 0.1011 -2.4097 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 0.7087 1.1609 3.4845 24 1 0.3701 -1.9487 -1.5249 25 1 1.5707 -2.5643 -0.3652 26 1 3.1926 -2.8655 -2.2367 27 1 1.7094 -3.8203 -2.4818 28 1 2.4520 -2.5806 -4.5531 29 1 0.8168 -2.1225 -4.0081 30 1 4.2893 0.4670 -3.4797 31 1 4.3751 -1.1011 -4.4469 32 1 2.4018 -0.3434 -5.8502 33 1 2.3160 1.2247 -4.8830 34 1 0.6831 0.2285 -2.5374 35 1 2.2327 1.0777 -2.3155 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307048436.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:22 Heat of formation + Delta-G solvation = 2.957170 kcal Electronic energy + Delta-G solvation = -14476.177141 eV Core-core repulsion = 12280.729837 eV Total energy + Delta-G solvation = -2195.447304 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48812 -37.59680 -34.91101 -33.35320 -30.35486 -28.41616 -27.26737 -25.21368 -23.42472 -22.94289 -21.26517 -19.31413 -18.15674 -17.05412 -16.22383 -16.05321 -15.64616 -15.34027 -14.61923 -14.43003 -14.28284 -13.62126 -13.45858 -12.97837 -12.81542 -12.69889 -12.57167 -12.32704 -12.24342 -12.13036 -11.86400 -11.70742 -11.11467 -11.02881 -10.75233 -10.49673 -10.42129 -8.79055 -8.10652 -6.21734 1.42179 1.44128 1.51746 2.42568 2.89104 3.17864 3.50668 3.78209 3.91675 4.10673 4.19428 4.31019 4.47572 4.66085 4.71498 4.74812 4.79436 4.84040 4.86422 4.94177 5.05127 5.09532 5.11601 5.17386 5.24090 5.35842 5.43144 5.51156 5.53904 5.70247 5.80314 6.22756 6.54002 6.78418 6.92231 7.47504 8.95424 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047285 B = 0.008653 C = 0.008278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.011103 B = 3234.926457 C = 3381.714327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.001 0.999 4 C -0.512 4.512 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.536 5.536 13 C 0.065 3.935 14 C -0.108 4.108 15 C -0.073 4.073 16 C -0.135 4.135 17 C -0.164 4.164 18 C -0.160 4.160 19 C 0.093 3.907 20 H 0.031 0.969 21 H 0.061 0.939 22 H 0.020 0.980 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.091 0.909 34 H 0.020 0.980 35 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 -4.821 -12.462 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 H 0.019 0.981 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.260 5.260 13 C -0.063 4.063 14 C -0.145 4.145 15 C -0.110 4.110 16 C -0.135 4.135 17 C -0.201 4.201 18 C -0.197 4.197 19 C -0.035 4.035 20 H 0.051 0.949 21 H 0.080 0.920 22 H 0.039 0.961 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.038 0.962 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.186 -4.760 -12.270 13.341 hybrid contribution -0.776 0.226 1.215 1.459 sum 1.410 -4.535 -11.055 12.031 Atomic orbital electron populations 1.22182 1.00439 0.99098 0.99729 1.19049 0.89943 0.92722 0.87593 0.98141 1.21319 1.30515 1.12397 0.90847 0.92647 1.25722 0.95424 0.95850 1.01899 1.70010 1.37934 1.24268 1.24060 0.85577 0.78683 0.78690 0.78465 1.19854 1.20928 1.19567 1.62160 1.59075 1.02881 1.01859 1.21892 0.95168 0.90364 0.98923 1.21577 1.00835 0.98289 0.93840 1.21152 1.00959 0.91641 0.97234 1.21444 1.00491 0.96677 0.94885 1.22929 0.90658 1.03425 1.03105 1.23040 1.01973 1.00171 0.94536 1.21560 0.96880 0.95659 0.89371 0.94950 0.92005 0.96073 0.92969 0.96523 0.92576 0.92135 0.90102 0.89731 0.91814 0.90227 0.87699 0.86767 0.89040 0.96219 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.84 8.23 71.98 0.59 -7.25 16 2 C 0.21 11.31 2.31 44.17 0.10 11.41 16 3 H 0.00 0.04 8.04 -2.39 -0.02 0.02 16 4 C -0.51 -28.96 7.83 25.60 0.20 -28.76 16 5 H 0.06 3.13 7.16 -2.91 -0.02 3.11 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -54.18 11.32 21.45 0.24 -53.94 16 8 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 N -0.54 -23.85 4.60 -875.03 -4.02 -27.88 16 13 C 0.06 2.57 4.36 86.32 0.38 2.95 16 14 C -0.11 -3.26 6.12 30.70 0.19 -3.07 16 15 C -0.07 -1.89 5.76 30.79 0.18 -1.72 16 16 C -0.13 -3.97 2.11 -52.20 -0.11 -4.08 16 17 C -0.16 -4.31 9.92 30.54 0.30 -4.01 16 18 C -0.16 -3.70 10.00 30.53 0.31 -3.40 16 19 C 0.09 3.57 4.94 86.32 0.43 3.99 16 20 H 0.03 1.57 6.52 -2.39 -0.02 1.55 16 21 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 22 H 0.02 0.95 6.75 -2.39 -0.02 0.94 16 23 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 24 H 0.02 0.67 6.75 -2.39 -0.02 0.65 16 25 H 0.06 2.47 6.65 -2.38 -0.02 2.46 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.02 0.77 6.74 -2.39 -0.02 0.76 16 35 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 Total: -1.00 -60.96 269.76 2.30 -58.67 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.04 Total: 9.61 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.01 Total: -32.96 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.78 Total: -81.82 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -60.96 2.30 -58.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307048436.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.623 kcal (2) G-P(sol) polarization free energy of solvation -60.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds