Wall clock time and date at job start Mon Mar 30 2020 02:31:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09004 * 109.46813 * 2 1
4 4 C 1.50695 * 109.46881 * 240.00301 * 2 1 3
5 5 H 1.08000 * 119.99730 * 239.99811 * 4 2 1
6 6 C 1.37879 * 120.00540 * 59.99398 * 4 2 1
7 7 N 1.31507 * 119.99710 * 0.02562 * 6 4 2
8 8 Si 1.86795 * 120.00204 * 179.97438 * 6 4 2
9 9 H 1.48504 * 109.47031 * 0.02562 * 8 6 4
10 10 H 1.48500 * 109.46927 * 120.00298 * 8 6 4
11 11 H 1.48497 * 109.47546 * 240.00412 * 8 6 4
12 12 N 1.46898 * 109.47272 * 120.00041 * 2 1 3
13 13 C 1.46780 * 111.00017 * 175.78428 * 12 2 1
14 14 C 1.53009 * 109.89145 * 188.89400 * 13 12 2
15 15 C 1.53318 * 109.19965 * 297.73974 * 14 13 12
16 16 C 1.53237 * 108.50762 * 54.28026 * 15 14 13
17 17 C 1.52799 * 117.71981 * 93.89862 * 16 15 14
18 18 C 1.52765 * 117.77394 * 162.82879 * 16 15 14
19 19 C 1.47056 * 110.99715 * 299.99951 * 12 2 1
20 20 H 1.09001 * 109.47079 * 299.99836 * 1 2 3
21 21 H 1.09003 * 109.47560 * 59.99932 * 1 2 3
22 22 H 1.09001 * 109.47045 * 180.02562 * 1 2 3
23 23 H 0.97007 * 120.00189 * 179.97438 * 7 6 4
24 24 H 1.08994 * 109.39693 * 309.02566 * 13 12 2
25 25 H 1.09005 * 109.40082 * 68.76492 * 13 12 2
26 26 H 1.09004 * 109.50795 * 57.65714 * 14 13 12
27 27 H 1.09002 * 109.51551 * 177.81640 * 14 13 12
28 28 H 1.09003 * 109.63462 * 173.98903 * 15 14 13
29 29 H 1.09000 * 109.63079 * 294.37625 * 15 14 13
30 30 H 1.09001 * 117.50156 * 215.23397 * 17 16 15
31 31 H 1.08993 * 117.50994 * 0.29805 * 17 16 15
32 32 H 1.08997 * 117.50347 * 359.80483 * 18 16 15
33 33 H 1.08998 * 117.50065 * 144.84528 * 18 16 15
34 34 H 1.09001 * 109.57076 * 297.64697 * 19 12 2
35 35 H 1.08996 * 109.57068 * 58.00126 * 19 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1314
6 6 1.6991 -0.2394 -2.4828
7 7 0.9434 0.8301 -2.6034
8 14 2.3223 -1.1195 -4.0080
9 1 3.1474 -2.2863 -3.6038
10 1 1.1676 -1.5866 -4.8164
11 1 3.1471 -0.1858 -4.8161
12 7 2.0197 -0.6925 1.1994
13 6 3.4835 -0.7999 1.1840
14 6 3.9507 -1.7107 2.3213
15 6 3.5470 -1.0890 3.6633
16 6 2.0394 -0.8156 3.6389
17 6 1.1134 -1.8865 4.2138
18 6 1.3373 -0.5777 4.9746
19 6 1.5482 -0.0256 2.4223
20 1 -0.3633 0.5138 0.8900
21 1 -0.3634 0.5138 -0.8900
22 1 -0.3633 -1.0277 0.0005
23 1 0.7093 1.1617 -3.4844
24 1 3.8058 -1.2173 0.2301
25 1 3.9206 0.1906 1.3105
26 1 3.4836 -2.6902 2.2184
27 1 5.0347 -1.8172 2.2806
28 1 3.7806 -1.7809 4.4726
29 1 4.0891 -0.1552 3.8122
30 1 0.1469 -2.0286 3.7302
31 1 1.5752 -2.7880 4.6163
32 1 1.9464 -0.6181 5.8776
33 1 0.5181 0.1411 4.9916
34 1 1.9451 0.9888 2.4612
35 1 0.4587 0.0066 2.4237
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307048437.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:31:25
Heat of formation + Delta-G solvation = 19.979070 kcal
Electronic energy + Delta-G solvation = -14449.376027 eV
Core-core repulsion = 12254.666848 eV
Total energy + Delta-G solvation = -2194.709179 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 209.148 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-39.01029 -35.85598 -33.22731 -31.73718 -28.48025 -27.40923 -24.96176 -23.58145
-22.19599 -21.01309 -19.61235 -18.10542 -16.22298 -15.46075 -14.99451 -14.29803
-14.02492 -13.55836 -13.22846 -12.79827 -12.42808 -12.23468 -11.88069 -11.48435
-11.25549 -10.97322 -10.82926 -10.59165 -10.47081 -10.28994 -10.12860 -9.92870
-9.69700 -9.51890 -9.23773 -8.76211 -8.39057 -7.06269 -5.98959 -4.03103
3.30817 3.38647 3.43102 4.06767 4.43395 4.93696 5.02191 5.14325
5.30948 5.33281 5.49318 5.62999 5.78176 5.85872 6.00833 6.17125
6.18263 6.27830 6.32418 6.33806 6.41975 6.43908 6.62990 6.81873
6.86030 6.93219 7.09857 7.21469 7.57486 7.79623 7.86015 8.27565
8.38425 8.66744 9.04294 9.61825 11.07952
Molecular weight = 209.15amu
Principal moments of inertia in cm(-1)
A = 0.047688 B = 0.008919 C = 0.008027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 587.005341 B = 3138.541425 C = 3487.219940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.211 3.789
3 H -0.004 1.004
4 C -0.501 4.501
5 H 0.064 0.936
6 C 0.058 3.942
7 N -0.894 5.894
8 Si 0.895 3.105
9 H -0.273 1.273
10 H -0.284 1.284
11 H -0.286 1.286
12 N -0.529 5.529
13 C 0.063 3.937
14 C -0.114 4.114
15 C -0.079 4.079
16 C -0.111 4.111
17 C -0.163 4.163
18 C -0.185 4.185
19 C 0.091 3.909
20 H 0.007 0.993
21 H 0.084 0.916
22 H 0.034 0.966
23 H 0.259 0.741
24 H 0.087 0.913
25 H 0.015 0.985
26 H 0.067 0.933
27 H 0.056 0.944
28 H 0.055 0.945
29 H 0.058 0.942
30 H 0.093 0.907
31 H 0.086 0.914
32 H 0.087 0.913
33 H 0.089 0.911
34 H 0.022 0.978
35 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.579 -2.738 10.796 11.433
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.105 3.895
3 H 0.014 0.986
4 C -0.540 4.540
5 H 0.082 0.918
6 C -0.143 4.143
7 N -0.533 5.533
8 Si 0.724 3.276
9 H -0.197 1.197
10 H -0.211 1.211
11 H -0.212 1.212
12 N -0.254 5.254
13 C -0.066 4.066
14 C -0.152 4.152
15 C -0.117 4.117
16 C -0.112 4.112
17 C -0.200 4.200
18 C -0.222 4.222
19 C -0.037 4.037
20 H 0.025 0.975
21 H 0.103 0.897
22 H 0.053 0.947
23 H 0.069 0.931
24 H 0.105 0.895
25 H 0.033 0.967
26 H 0.085 0.915
27 H 0.074 0.926
28 H 0.073 0.927
29 H 0.077 0.923
30 H 0.112 0.888
31 H 0.105 0.895
32 H 0.106 0.894
33 H 0.108 0.892
34 H 0.040 0.960
35 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 2.307 -3.094 10.625 11.304
hybrid contribution 0.536 0.457 -0.826 1.086
sum 2.843 -2.637 9.799 10.539
Atomic orbital electron populations
1.21828 0.97777 0.99575 0.99782 1.19233 0.92299 0.91928 0.85991
0.98612 1.21205 1.30819 1.12200 0.89756 0.91762 1.24941 0.95261
0.95100 0.99027 1.69906 1.37078 1.23086 1.23240 0.86478 0.78594
0.79614 0.82953 1.19731 1.21056 1.21182 1.62034 1.08902 1.52586
1.01859 1.21915 0.89046 0.96844 0.98767 1.21619 0.99110 1.00130
0.94316 1.21164 0.92873 0.99931 0.97727 1.21486 0.93827 1.02133
0.93740 1.22872 1.01354 0.92390 1.03378 1.22952 1.03422 1.00568
0.95279 1.21626 0.99593 0.93677 0.88825 0.97452 0.89718 0.94712
0.93088 0.89499 0.96663 0.91459 0.92564 0.92659 0.92332 0.88850
0.89507 0.89403 0.89207 0.95968 0.90964
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.28 8.74 37.16 0.32 -2.96 16
2 C 0.21 5.45 2.07 -68.87 -0.14 5.31 16
3 H 0.00 -0.10 8.14 -51.93 -0.42 -0.53 16
4 C -0.50 -13.84 7.81 -34.44 -0.27 -14.10 16
5 H 0.06 1.77 6.42 -52.49 -0.34 1.43 16
6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16
7 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16
8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16
9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
12 N -0.53 -11.70 4.52 -227.91 -1.03 -12.73 16
13 C 0.06 1.27 5.16 -3.88 -0.02 1.25 16
14 C -0.11 -1.86 6.11 -26.56 -0.16 -2.02 16
15 C -0.08 -1.18 5.76 -26.44 -0.15 -1.33 16
16 C -0.11 -1.78 2.11 -154.53 -0.33 -2.10 16
17 C -0.16 -2.34 9.92 -26.82 -0.27 -2.61 16
18 C -0.18 -2.46 10.00 -26.83 -0.27 -2.72 16
19 C 0.09 1.76 4.88 -3.66 -0.02 1.74 16
20 H 0.01 0.15 6.36 -51.93 -0.33 -0.18 16
21 H 0.08 2.30 6.07 -51.93 -0.32 1.98 16
22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16
23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
24 H 0.09 1.91 5.93 -51.93 -0.31 1.60 16
25 H 0.02 0.31 8.13 -51.93 -0.42 -0.11 16
26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
28 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16
29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16
31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16
32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
35 H 0.07 1.41 6.15 -51.93 -0.32 1.09 16
LS Contribution 271.44 15.07 4.09 4.09
Total: -1.00 -28.29 271.44 -8.54 -36.83
By element:
Atomic # 1 Polarization: 4.33 SS G_CDS: -5.81 Total: -1.48 kcal
Atomic # 6 Polarization: -16.65 SS G_CDS: -1.39 Total: -18.05 kcal
Atomic # 7 Polarization: -37.41 SS G_CDS: -0.40 Total: -37.82 kcal
Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal
Total LS contribution 4.09 Total: 4.09 kcal
Total: -28.29 -8.54 -36.83 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307048437.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.812 kcal
(2) G-P(sol) polarization free energy of solvation -28.290 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds