Wall clock time and date at job start Mon Mar 30 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46813 * 2 1 4 4 C 1.50695 * 109.46881 * 240.00301 * 2 1 3 5 5 H 1.08000 * 119.99730 * 239.99811 * 4 2 1 6 6 C 1.37879 * 120.00540 * 59.99398 * 4 2 1 7 7 N 1.31507 * 119.99710 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00204 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47031 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46927 * 120.00298 * 8 6 4 11 11 H 1.48497 * 109.47546 * 240.00412 * 8 6 4 12 12 N 1.46898 * 109.47272 * 120.00041 * 2 1 3 13 13 C 1.46780 * 111.00017 * 175.78428 * 12 2 1 14 14 C 1.53009 * 109.89145 * 188.89400 * 13 12 2 15 15 C 1.53318 * 109.19965 * 297.73974 * 14 13 12 16 16 C 1.53237 * 108.50762 * 54.28026 * 15 14 13 17 17 C 1.52799 * 117.71981 * 93.89862 * 16 15 14 18 18 C 1.52765 * 117.77394 * 162.82879 * 16 15 14 19 19 C 1.47056 * 110.99715 * 299.99951 * 12 2 1 20 20 H 1.09001 * 109.47079 * 299.99836 * 1 2 3 21 21 H 1.09003 * 109.47560 * 59.99932 * 1 2 3 22 22 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 23 23 H 0.97007 * 120.00189 * 179.97438 * 7 6 4 24 24 H 1.08994 * 109.39693 * 309.02566 * 13 12 2 25 25 H 1.09005 * 109.40082 * 68.76492 * 13 12 2 26 26 H 1.09004 * 109.50795 * 57.65714 * 14 13 12 27 27 H 1.09002 * 109.51551 * 177.81640 * 14 13 12 28 28 H 1.09003 * 109.63462 * 173.98903 * 15 14 13 29 29 H 1.09000 * 109.63079 * 294.37625 * 15 14 13 30 30 H 1.09001 * 117.50156 * 215.23397 * 17 16 15 31 31 H 1.08993 * 117.50994 * 0.29805 * 17 16 15 32 32 H 1.08997 * 117.50347 * 359.80483 * 18 16 15 33 33 H 1.08998 * 117.50065 * 144.84528 * 18 16 15 34 34 H 1.09001 * 109.57076 * 297.64697 * 19 12 2 35 35 H 1.08996 * 109.57068 * 58.00126 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6038 10 1 1.1676 -1.5866 -4.8164 11 1 3.1471 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 3.4835 -0.7999 1.1840 14 6 3.9507 -1.7107 2.3213 15 6 3.5470 -1.0890 3.6633 16 6 2.0394 -0.8156 3.6389 17 6 1.1134 -1.8865 4.2138 18 6 1.3373 -0.5777 4.9746 19 6 1.5482 -0.0256 2.4223 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7093 1.1617 -3.4844 24 1 3.8058 -1.2173 0.2301 25 1 3.9206 0.1906 1.3105 26 1 3.4836 -2.6902 2.2184 27 1 5.0347 -1.8172 2.2806 28 1 3.7806 -1.7809 4.4726 29 1 4.0891 -0.1552 3.8122 30 1 0.1469 -2.0286 3.7302 31 1 1.5752 -2.7880 4.6163 32 1 1.9464 -0.6181 5.8776 33 1 0.5181 0.1411 4.9916 34 1 1.9451 0.9888 2.4612 35 1 0.4587 0.0066 2.4237 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307048437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:25 Heat of formation + Delta-G solvation = 19.979070 kcal Electronic energy + Delta-G solvation = -14449.376027 eV Core-core repulsion = 12254.666848 eV Total energy + Delta-G solvation = -2194.709179 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.01029 -35.85598 -33.22731 -31.73718 -28.48025 -27.40923 -24.96176 -23.58145 -22.19599 -21.01309 -19.61235 -18.10542 -16.22298 -15.46075 -14.99451 -14.29803 -14.02492 -13.55836 -13.22846 -12.79827 -12.42808 -12.23468 -11.88069 -11.48435 -11.25549 -10.97322 -10.82926 -10.59165 -10.47081 -10.28994 -10.12860 -9.92870 -9.69700 -9.51890 -9.23773 -8.76211 -8.39057 -7.06269 -5.98959 -4.03103 3.30817 3.38647 3.43102 4.06767 4.43395 4.93696 5.02191 5.14325 5.30948 5.33281 5.49318 5.62999 5.78176 5.85872 6.00833 6.17125 6.18263 6.27830 6.32418 6.33806 6.41975 6.43908 6.62990 6.81873 6.86030 6.93219 7.09857 7.21469 7.57486 7.79623 7.86015 8.27565 8.38425 8.66744 9.04294 9.61825 11.07952 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047688 B = 0.008919 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.005341 B = 3138.541425 C = 3487.219940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H -0.004 1.004 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.529 5.529 13 C 0.063 3.937 14 C -0.114 4.114 15 C -0.079 4.079 16 C -0.111 4.111 17 C -0.163 4.163 18 C -0.185 4.185 19 C 0.091 3.909 20 H 0.007 0.993 21 H 0.084 0.916 22 H 0.034 0.966 23 H 0.259 0.741 24 H 0.087 0.913 25 H 0.015 0.985 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.022 0.978 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -2.738 10.796 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.014 0.986 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.254 5.254 13 C -0.066 4.066 14 C -0.152 4.152 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.200 4.200 18 C -0.222 4.222 19 C -0.037 4.037 20 H 0.025 0.975 21 H 0.103 0.897 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.105 0.895 25 H 0.033 0.967 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.040 0.960 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.307 -3.094 10.625 11.304 hybrid contribution 0.536 0.457 -0.826 1.086 sum 2.843 -2.637 9.799 10.539 Atomic orbital electron populations 1.21828 0.97777 0.99575 0.99782 1.19233 0.92299 0.91928 0.85991 0.98612 1.21205 1.30819 1.12200 0.89756 0.91762 1.24941 0.95261 0.95100 0.99027 1.69906 1.37078 1.23086 1.23240 0.86478 0.78594 0.79614 0.82953 1.19731 1.21056 1.21182 1.62034 1.08902 1.52586 1.01859 1.21915 0.89046 0.96844 0.98767 1.21619 0.99110 1.00130 0.94316 1.21164 0.92873 0.99931 0.97727 1.21486 0.93827 1.02133 0.93740 1.22872 1.01354 0.92390 1.03378 1.22952 1.03422 1.00568 0.95279 1.21626 0.99593 0.93677 0.88825 0.97452 0.89718 0.94712 0.93088 0.89499 0.96663 0.91459 0.92564 0.92659 0.92332 0.88850 0.89507 0.89403 0.89207 0.95968 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.74 37.16 0.32 -2.96 16 2 C 0.21 5.45 2.07 -68.87 -0.14 5.31 16 3 H 0.00 -0.10 8.14 -51.93 -0.42 -0.53 16 4 C -0.50 -13.84 7.81 -34.44 -0.27 -14.10 16 5 H 0.06 1.77 6.42 -52.49 -0.34 1.43 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.08 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.53 -11.70 4.52 -227.91 -1.03 -12.73 16 13 C 0.06 1.27 5.16 -3.88 -0.02 1.25 16 14 C -0.11 -1.86 6.11 -26.56 -0.16 -2.02 16 15 C -0.08 -1.18 5.76 -26.44 -0.15 -1.33 16 16 C -0.11 -1.78 2.11 -154.53 -0.33 -2.10 16 17 C -0.16 -2.34 9.92 -26.82 -0.27 -2.61 16 18 C -0.18 -2.46 10.00 -26.83 -0.27 -2.72 16 19 C 0.09 1.76 4.88 -3.66 -0.02 1.74 16 20 H 0.01 0.15 6.36 -51.93 -0.33 -0.18 16 21 H 0.08 2.30 6.07 -51.93 -0.32 1.98 16 22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.09 1.91 5.93 -51.93 -0.31 1.60 16 25 H 0.02 0.31 8.13 -51.93 -0.42 -0.11 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.41 6.15 -51.93 -0.32 1.09 16 LS Contribution 271.44 15.07 4.09 4.09 Total: -1.00 -28.29 271.44 -8.54 -36.83 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -5.81 Total: -1.48 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -1.39 Total: -18.05 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.40 Total: -37.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.29 -8.54 -36.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307048437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.812 kcal (2) G-P(sol) polarization free energy of solvation -28.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds