Wall clock time and date at job start Mon Mar 30 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46813 * 2 1 4 4 C 1.50695 * 109.46881 * 240.00301 * 2 1 3 5 5 H 1.08000 * 119.99730 * 239.99811 * 4 2 1 6 6 C 1.37879 * 120.00540 * 59.99398 * 4 2 1 7 7 N 1.31507 * 119.99710 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00204 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47031 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46927 * 120.00298 * 8 6 4 11 11 H 1.48497 * 109.47546 * 240.00412 * 8 6 4 12 12 N 1.46898 * 109.47272 * 120.00041 * 2 1 3 13 13 C 1.46780 * 111.00017 * 175.78428 * 12 2 1 14 14 C 1.53009 * 109.89145 * 188.89400 * 13 12 2 15 15 C 1.53318 * 109.19965 * 297.73974 * 14 13 12 16 16 C 1.53237 * 108.50762 * 54.28026 * 15 14 13 17 17 C 1.52799 * 117.71981 * 93.89862 * 16 15 14 18 18 C 1.52765 * 117.77394 * 162.82879 * 16 15 14 19 19 C 1.47056 * 110.99715 * 299.99951 * 12 2 1 20 20 H 1.09001 * 109.47079 * 299.99836 * 1 2 3 21 21 H 1.09003 * 109.47560 * 59.99932 * 1 2 3 22 22 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 23 23 H 0.97007 * 120.00189 * 179.97438 * 7 6 4 24 24 H 1.08994 * 109.39693 * 309.02566 * 13 12 2 25 25 H 1.09005 * 109.40082 * 68.76492 * 13 12 2 26 26 H 1.09004 * 109.50795 * 57.65714 * 14 13 12 27 27 H 1.09002 * 109.51551 * 177.81640 * 14 13 12 28 28 H 1.09003 * 109.63462 * 173.98903 * 15 14 13 29 29 H 1.09000 * 109.63079 * 294.37625 * 15 14 13 30 30 H 1.09001 * 117.50156 * 215.23397 * 17 16 15 31 31 H 1.08993 * 117.50994 * 0.29805 * 17 16 15 32 32 H 1.08997 * 117.50347 * 359.80483 * 18 16 15 33 33 H 1.08998 * 117.50065 * 144.84528 * 18 16 15 34 34 H 1.09001 * 109.57076 * 297.64697 * 19 12 2 35 35 H 1.08996 * 109.57068 * 58.00126 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 3.1474 -2.2863 -3.6038 10 1 1.1676 -1.5866 -4.8164 11 1 3.1471 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 3.4835 -0.7999 1.1840 14 6 3.9507 -1.7107 2.3213 15 6 3.5470 -1.0890 3.6633 16 6 2.0394 -0.8156 3.6389 17 6 1.1134 -1.8865 4.2138 18 6 1.3373 -0.5777 4.9746 19 6 1.5482 -0.0256 2.4223 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.7093 1.1617 -3.4844 24 1 3.8058 -1.2173 0.2301 25 1 3.9206 0.1906 1.3105 26 1 3.4836 -2.6902 2.2184 27 1 5.0347 -1.8172 2.2806 28 1 3.7806 -1.7809 4.4726 29 1 4.0891 -0.1552 3.8122 30 1 0.1469 -2.0286 3.7302 31 1 1.5752 -2.7880 4.6163 32 1 1.9464 -0.6181 5.8776 33 1 0.5181 0.1411 4.9916 34 1 1.9451 0.9888 2.4612 35 1 0.4587 0.0066 2.4237 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307048437.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:25 Heat of formation + Delta-G solvation = 3.445802 kcal Electronic energy + Delta-G solvation = -14450.092963 eV Core-core repulsion = 12254.666848 eV Total energy + Delta-G solvation = -2195.426115 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42296 -37.45948 -35.00167 -33.46520 -30.35333 -28.94133 -26.93508 -25.20614 -23.30813 -22.45665 -21.52139 -19.47382 -18.30241 -17.21575 -16.23762 -16.08635 -15.60121 -15.14922 -14.75455 -14.57811 -13.98170 -13.63020 -13.53820 -13.17074 -12.89748 -12.63504 -12.41585 -12.28615 -12.18278 -12.13453 -11.78148 -11.73533 -11.13846 -11.00523 -10.67393 -10.59805 -10.38916 -8.88660 -8.12520 -6.24408 1.40343 1.41879 1.54092 2.41175 2.88119 3.15644 3.47972 3.77915 3.90763 4.10068 4.18635 4.29890 4.46606 4.66051 4.71643 4.75531 4.83291 4.85810 4.92114 4.98323 5.03342 5.09651 5.10566 5.18233 5.28122 5.36283 5.41209 5.48464 5.53896 5.71992 5.79305 6.24851 6.44223 6.77410 6.91610 7.44845 8.94015 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047688 B = 0.008919 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.005341 B = 3138.541425 C = 3487.219940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.214 3.786 3 H -0.044 1.044 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.533 5.533 13 C 0.061 3.939 14 C -0.105 4.105 15 C -0.074 4.074 16 C -0.136 4.136 17 C -0.161 4.161 18 C -0.160 4.160 19 C 0.092 3.908 20 H 0.026 0.974 21 H 0.060 0.940 22 H 0.031 0.969 23 H 0.262 0.738 24 H 0.063 0.937 25 H 0.005 0.995 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.009 0.991 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 -3.996 12.323 13.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 H -0.026 1.026 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.258 5.258 13 C -0.067 4.067 14 C -0.143 4.143 15 C -0.111 4.111 16 C -0.137 4.137 17 C -0.198 4.198 18 C -0.198 4.198 19 C -0.036 4.036 20 H 0.045 0.955 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.023 0.977 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.027 0.973 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.046 -4.358 12.173 13.283 hybrid contribution 0.289 0.893 -1.277 1.585 sum 3.335 -3.465 10.896 11.910 Atomic orbital electron populations 1.21630 0.97331 0.99148 0.99538 1.19053 0.92663 0.89944 0.87608 1.02649 1.21448 1.30986 1.12217 0.90868 0.92179 1.25757 0.95388 0.95797 1.02028 1.70034 1.37897 1.24266 1.24004 0.85441 0.78146 0.78596 0.79070 1.19057 1.20524 1.20653 1.62018 1.10107 1.52045 1.01636 1.21951 0.87936 0.97177 0.99638 1.21557 1.00479 0.98699 0.93554 1.21154 0.91866 1.00672 0.97411 1.21434 0.94972 1.03622 0.93632 1.22930 1.00370 0.93390 1.03127 1.23041 1.02756 0.99492 0.94464 1.21635 0.99107 0.93607 0.89285 0.95481 0.92128 0.94993 0.92933 0.91902 0.97716 0.91874 0.90126 0.89629 0.92042 0.90020 0.87655 0.86809 0.88984 0.97331 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.74 71.98 0.63 -5.43 16 2 C 0.21 11.45 2.07 44.17 0.09 11.54 16 3 H -0.04 -2.64 8.14 -2.38 -0.02 -2.66 16 4 C -0.52 -29.26 7.81 25.60 0.20 -29.06 16 5 H 0.06 3.38 6.42 -2.91 -0.02 3.36 16 6 C 0.01 0.49 5.30 84.66 0.45 0.94 16 7 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16 8 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 N -0.53 -23.99 4.52 -874.97 -3.96 -27.95 16 13 C 0.06 2.51 5.16 86.33 0.45 2.95 16 14 C -0.11 -3.23 6.11 30.70 0.19 -3.04 16 15 C -0.07 -1.96 5.76 30.78 0.18 -1.78 16 16 C -0.14 -4.04 2.11 -52.20 -0.11 -4.15 16 17 C -0.16 -4.17 9.92 30.54 0.30 -3.87 16 18 C -0.16 -3.70 10.00 30.53 0.31 -3.40 16 19 C 0.09 3.53 4.88 86.32 0.42 3.95 16 20 H 0.03 1.22 6.36 -2.39 -0.02 1.21 16 21 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 22 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 24 H 0.06 2.83 5.93 -2.39 -0.01 2.82 16 25 H 0.00 0.19 8.13 -2.38 -0.02 0.18 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.06 2.54 6.15 -2.39 -0.01 2.52 16 Total: -1.00 -61.79 271.44 2.45 -59.34 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.04 Total: 7.58 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 3.10 Total: -31.35 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -3.71 Total: -82.01 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.79 2.45 -59.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307048437.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.789 kcal (2) G-P(sol) polarization free energy of solvation -61.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds