Wall clock time and date at job start Mon Mar 30 2020 02:31:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09004 * 109.46813 * 2 1
4 4 C 1.50695 * 109.46881 * 240.00301 * 2 1 3
5 5 H 1.08000 * 119.99730 * 239.99811 * 4 2 1
6 6 C 1.37879 * 120.00540 * 59.99398 * 4 2 1
7 7 N 1.31507 * 119.99710 * 0.02562 * 6 4 2
8 8 Si 1.86795 * 120.00204 * 179.97438 * 6 4 2
9 9 H 1.48504 * 109.47031 * 0.02562 * 8 6 4
10 10 H 1.48500 * 109.46927 * 120.00298 * 8 6 4
11 11 H 1.48497 * 109.47546 * 240.00412 * 8 6 4
12 12 N 1.46898 * 109.47272 * 120.00041 * 2 1 3
13 13 C 1.46780 * 111.00017 * 175.78428 * 12 2 1
14 14 C 1.53009 * 109.89145 * 188.89400 * 13 12 2
15 15 C 1.53318 * 109.19965 * 297.73974 * 14 13 12
16 16 C 1.53237 * 108.50762 * 54.28026 * 15 14 13
17 17 C 1.52799 * 117.71981 * 93.89862 * 16 15 14
18 18 C 1.52765 * 117.77394 * 162.82879 * 16 15 14
19 19 C 1.47056 * 110.99715 * 299.99951 * 12 2 1
20 20 H 1.09001 * 109.47079 * 299.99836 * 1 2 3
21 21 H 1.09003 * 109.47560 * 59.99932 * 1 2 3
22 22 H 1.09001 * 109.47045 * 180.02562 * 1 2 3
23 23 H 0.97007 * 120.00189 * 179.97438 * 7 6 4
24 24 H 1.08994 * 109.39693 * 309.02566 * 13 12 2
25 25 H 1.09005 * 109.40082 * 68.76492 * 13 12 2
26 26 H 1.09004 * 109.50795 * 57.65714 * 14 13 12
27 27 H 1.09002 * 109.51551 * 177.81640 * 14 13 12
28 28 H 1.09003 * 109.63462 * 173.98903 * 15 14 13
29 29 H 1.09000 * 109.63079 * 294.37625 * 15 14 13
30 30 H 1.09001 * 117.50156 * 215.23397 * 17 16 15
31 31 H 1.08993 * 117.50994 * 0.29805 * 17 16 15
32 32 H 1.08997 * 117.50347 * 359.80483 * 18 16 15
33 33 H 1.08998 * 117.50065 * 144.84528 * 18 16 15
34 34 H 1.09001 * 109.57076 * 297.64697 * 19 12 2
35 35 H 1.08996 * 109.57068 * 58.00126 * 19 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 2.6532 -1.5884 -1.1314
6 6 1.6991 -0.2394 -2.4828
7 7 0.9434 0.8301 -2.6034
8 14 2.3223 -1.1195 -4.0080
9 1 3.1474 -2.2863 -3.6038
10 1 1.1676 -1.5866 -4.8164
11 1 3.1471 -0.1858 -4.8161
12 7 2.0197 -0.6925 1.1994
13 6 3.4835 -0.7999 1.1840
14 6 3.9507 -1.7107 2.3213
15 6 3.5470 -1.0890 3.6633
16 6 2.0394 -0.8156 3.6389
17 6 1.1134 -1.8865 4.2138
18 6 1.3373 -0.5777 4.9746
19 6 1.5482 -0.0256 2.4223
20 1 -0.3633 0.5138 0.8900
21 1 -0.3634 0.5138 -0.8900
22 1 -0.3633 -1.0277 0.0005
23 1 0.7093 1.1617 -3.4844
24 1 3.8058 -1.2173 0.2301
25 1 3.9206 0.1906 1.3105
26 1 3.4836 -2.6902 2.2184
27 1 5.0347 -1.8172 2.2806
28 1 3.7806 -1.7809 4.4726
29 1 4.0891 -0.1552 3.8122
30 1 0.1469 -2.0286 3.7302
31 1 1.5752 -2.7880 4.6163
32 1 1.9464 -0.6181 5.8776
33 1 0.5181 0.1411 4.9916
34 1 1.9451 0.9888 2.4612
35 1 0.4587 0.0066 2.4237
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307048437.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:31:25
Heat of formation + Delta-G solvation = 3.445802 kcal
Electronic energy + Delta-G solvation = -14450.092963 eV
Core-core repulsion = 12254.666848 eV
Total energy + Delta-G solvation = -2195.426115 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 209.148 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.42296 -37.45948 -35.00167 -33.46520 -30.35333 -28.94133 -26.93508 -25.20614
-23.30813 -22.45665 -21.52139 -19.47382 -18.30241 -17.21575 -16.23762 -16.08635
-15.60121 -15.14922 -14.75455 -14.57811 -13.98170 -13.63020 -13.53820 -13.17074
-12.89748 -12.63504 -12.41585 -12.28615 -12.18278 -12.13453 -11.78148 -11.73533
-11.13846 -11.00523 -10.67393 -10.59805 -10.38916 -8.88660 -8.12520 -6.24408
1.40343 1.41879 1.54092 2.41175 2.88119 3.15644 3.47972 3.77915
3.90763 4.10068 4.18635 4.29890 4.46606 4.66051 4.71643 4.75531
4.83291 4.85810 4.92114 4.98323 5.03342 5.09651 5.10566 5.18233
5.28122 5.36283 5.41209 5.48464 5.53896 5.71992 5.79305 6.24851
6.44223 6.77410 6.91610 7.44845 8.94015
Molecular weight = 209.15amu
Principal moments of inertia in cm(-1)
A = 0.047688 B = 0.008919 C = 0.008027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 587.005341 B = 3138.541425 C = 3487.219940
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.214 3.786
3 H -0.044 1.044
4 C -0.517 4.517
5 H 0.060 0.940
6 C 0.009 3.991
7 N -0.922 5.922
8 Si 0.962 3.038
9 H -0.266 1.266
10 H -0.279 1.279
11 H -0.281 1.281
12 N -0.533 5.533
13 C 0.061 3.939
14 C -0.105 4.105
15 C -0.074 4.074
16 C -0.136 4.136
17 C -0.161 4.161
18 C -0.160 4.160
19 C 0.092 3.908
20 H 0.026 0.974
21 H 0.060 0.940
22 H 0.031 0.969
23 H 0.262 0.738
24 H 0.063 0.937
25 H 0.005 0.995
26 H 0.062 0.938
27 H 0.080 0.920
28 H 0.085 0.915
29 H 0.061 0.939
30 H 0.081 0.919
31 H 0.105 0.895
32 H 0.114 0.886
33 H 0.092 0.908
34 H 0.009 0.991
35 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.313 -3.996 12.323 13.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.107 3.893
3 H -0.026 1.026
4 C -0.555 4.555
5 H 0.078 0.922
6 C -0.190 4.190
7 N -0.562 5.562
8 Si 0.787 3.213
9 H -0.191 1.191
10 H -0.205 1.205
11 H -0.207 1.207
12 N -0.258 5.258
13 C -0.067 4.067
14 C -0.143 4.143
15 C -0.111 4.111
16 C -0.137 4.137
17 C -0.198 4.198
18 C -0.198 4.198
19 C -0.036 4.036
20 H 0.045 0.955
21 H 0.079 0.921
22 H 0.050 0.950
23 H 0.071 0.929
24 H 0.081 0.919
25 H 0.023 0.977
26 H 0.081 0.919
27 H 0.099 0.901
28 H 0.104 0.896
29 H 0.080 0.920
30 H 0.100 0.900
31 H 0.123 0.877
32 H 0.132 0.868
33 H 0.110 0.890
34 H 0.027 0.973
35 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 3.046 -4.358 12.173 13.283
hybrid contribution 0.289 0.893 -1.277 1.585
sum 3.335 -3.465 10.896 11.910
Atomic orbital electron populations
1.21630 0.97331 0.99148 0.99538 1.19053 0.92663 0.89944 0.87608
1.02649 1.21448 1.30986 1.12217 0.90868 0.92179 1.25757 0.95388
0.95797 1.02028 1.70034 1.37897 1.24266 1.24004 0.85441 0.78146
0.78596 0.79070 1.19057 1.20524 1.20653 1.62018 1.10107 1.52045
1.01636 1.21951 0.87936 0.97177 0.99638 1.21557 1.00479 0.98699
0.93554 1.21154 0.91866 1.00672 0.97411 1.21434 0.94972 1.03622
0.93632 1.22930 1.00370 0.93390 1.03127 1.23041 1.02756 0.99492
0.94464 1.21635 0.99107 0.93607 0.89285 0.95481 0.92128 0.94993
0.92933 0.91902 0.97716 0.91874 0.90126 0.89629 0.92042 0.90020
0.87655 0.86809 0.88984 0.97331 0.91691
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -6.06 8.74 71.98 0.63 -5.43 16
2 C 0.21 11.45 2.07 44.17 0.09 11.54 16
3 H -0.04 -2.64 8.14 -2.38 -0.02 -2.66 16
4 C -0.52 -29.26 7.81 25.60 0.20 -29.06 16
5 H 0.06 3.38 6.42 -2.91 -0.02 3.36 16
6 C 0.01 0.49 5.30 84.66 0.45 0.94 16
7 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16
8 Si 0.96 44.41 29.54 68.60 2.03 46.44 16
9 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16
10 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16
11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
12 N -0.53 -23.99 4.52 -874.97 -3.96 -27.95 16
13 C 0.06 2.51 5.16 86.33 0.45 2.95 16
14 C -0.11 -3.23 6.11 30.70 0.19 -3.04 16
15 C -0.07 -1.96 5.76 30.78 0.18 -1.78 16
16 C -0.14 -4.04 2.11 -52.20 -0.11 -4.15 16
17 C -0.16 -4.17 9.92 30.54 0.30 -3.87 16
18 C -0.16 -3.70 10.00 30.53 0.31 -3.40 16
19 C 0.09 3.53 4.88 86.32 0.42 3.95 16
20 H 0.03 1.22 6.36 -2.39 -0.02 1.21 16
21 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16
22 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16
23 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16
24 H 0.06 2.83 5.93 -2.39 -0.01 2.82 16
25 H 0.00 0.19 8.13 -2.38 -0.02 0.18 16
26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16
27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16
28 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16
29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
31 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16
32 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16
33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16
34 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
35 H 0.06 2.54 6.15 -2.39 -0.01 2.52 16
Total: -1.00 -61.79 271.44 2.45 -59.34
By element:
Atomic # 1 Polarization: 6.54 SS G_CDS: 1.04 Total: 7.58 kcal
Atomic # 6 Polarization: -34.45 SS G_CDS: 3.10 Total: -31.35 kcal
Atomic # 7 Polarization: -78.29 SS G_CDS: -3.71 Total: -82.01 kcal
Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal
Total: -61.79 2.45 -59.34 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307048437.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.789 kcal
(2) G-P(sol) polarization free energy of solvation -61.795 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.994 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.343 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.446 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds