Wall clock time and date at job start Mon Mar 30 2020 03:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29463 * 1 3 3 Si 1.86794 * 119.99810 * 2 1 4 4 H 1.48499 * 109.46901 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47097 * 299.99073 * 3 2 1 6 6 H 1.48498 * 109.47282 * 59.99499 * 3 2 1 7 7 C 1.46655 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99779 * 164.84403 * 7 2 1 9 9 C 1.39642 * 120.00313 * 345.11641 * 7 2 1 10 10 C 1.41886 * 121.00762 * 336.66197 * 9 7 2 11 11 C 1.36518 * 118.27888 * 179.70618 * 10 9 7 12 12 C 1.38892 * 120.39616 * 0.60025 * 11 10 9 13 13 N 1.48013 * 118.87913 * 179.69028 * 12 11 10 14 14 O 1.31701 * 120.00161 * 179.97438 * 13 12 11 15 15 O 1.31699 * 120.00070 * 359.97323 * 13 12 11 16 16 N 1.31774 * 122.23971 * 359.66087 * 12 11 10 17 17 C 1.32362 * 121.74110 * 0.02619 * 16 12 11 18 18 O 1.35008 * 120.31645 * 180.02562 * 17 16 12 19 19 H 0.96997 * 119.99887 * 0.02562 * 1 2 3 20 20 H 1.08000 * 120.85868 * 0.02562 * 10 9 7 21 21 H 1.08003 * 119.79690 * 180.31060 * 11 10 9 22 22 H 0.96694 * 113.99780 * 275.02665 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2285 1.6177 0.0000 4 1 3.6885 1.3464 0.0006 5 1 1.8699 2.3963 -1.2126 6 1 1.8697 2.3965 1.2124 7 6 2.0279 -1.2701 0.0006 8 1 3.0797 -1.2865 -0.2440 9 6 1.3648 -2.4590 0.3117 10 6 0.1741 -2.4516 1.0833 11 6 -0.4316 -3.6457 1.3495 12 6 0.1190 -4.8324 0.8829 13 7 -0.5620 -6.1085 1.1970 14 8 -0.0595 -7.2467 0.7652 15 8 -1.6704 -6.1058 1.9082 16 7 1.2266 -4.8608 0.1696 17 6 1.8814 -3.7541 -0.1441 18 8 3.0136 -3.8166 -0.8770 19 1 -0.4850 0.8400 -0.0004 20 1 -0.2450 -1.5247 1.4462 21 1 -1.3419 -3.6681 1.9303 22 1 3.8108 -3.9830 -0.3557 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307051913.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:33 Heat of formation + Delta-G solvation = -28.065207 kcal Electronic energy + Delta-G solvation = -13141.036731 eV Core-core repulsion = 10471.319001 eV Total energy + Delta-G solvation = -2669.717729 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.95864 -38.95102 -37.61035 -36.66292 -34.68297 -33.35190 -31.77820 -29.13454 -26.00645 -23.87567 -23.35011 -20.13844 -19.86163 -18.92162 -18.15101 -17.63436 -16.89372 -16.51347 -15.99692 -15.71125 -14.47368 -14.37233 -13.96985 -13.63644 -13.15220 -12.78702 -12.54773 -11.97234 -11.78064 -11.67602 -11.56797 -11.40267 -10.93036 -10.53880 -10.10999 -9.46440 -7.19949 -1.26204 0.39661 0.74669 0.94245 1.31907 1.49180 1.66530 2.04123 2.15297 2.79412 2.93917 3.79806 4.14590 4.16543 4.27284 4.65277 4.88048 5.03247 5.25322 5.56011 5.60382 5.74578 5.97836 6.36249 6.87049 7.15497 7.30925 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.051761 B = 0.009114 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.821755 B = 3071.387377 C = 3549.931962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.005 3.995 3 Si 1.021 2.979 4 H -0.230 1.230 5 H -0.256 1.256 6 H -0.253 1.253 7 C -0.187 4.187 8 H 0.159 0.841 9 C -0.033 4.033 10 C -0.123 4.123 11 C -0.098 4.098 12 C 0.035 3.965 13 N 0.048 4.952 14 O -0.393 6.393 15 O -0.382 6.382 16 N -0.485 5.485 17 C 0.283 3.717 18 O -0.466 6.466 19 H 0.337 0.663 20 H 0.165 0.835 21 H 0.128 0.872 22 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.618 17.873 -0.900 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.305 5.305 2 C -0.230 4.230 3 Si 0.835 3.165 4 H -0.152 1.152 5 H -0.180 1.180 6 H -0.177 1.177 7 C -0.212 4.212 8 H 0.177 0.823 9 C -0.042 4.042 10 C -0.146 4.146 11 C -0.120 4.120 12 C -0.188 4.188 13 N 0.441 4.559 14 O -0.528 6.528 15 O -0.517 6.517 16 N -0.206 5.206 17 C 0.073 3.927 18 O -0.273 6.273 19 H 0.153 0.847 20 H 0.182 0.818 21 H 0.146 0.854 22 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 8.084 17.082 -1.529 18.960 hybrid contribution -0.518 -0.140 0.670 0.858 sum 7.566 16.942 -0.859 18.575 Atomic orbital electron populations 1.68991 1.11082 1.36623 1.13792 1.29302 0.95983 1.06149 0.91523 0.84497 0.80253 0.71472 0.80229 1.15170 1.18005 1.17690 1.22988 0.99346 0.88800 1.10098 0.82340 1.19980 0.95531 0.92631 0.96016 1.21451 0.96404 0.96179 1.00531 1.20685 1.00470 0.90464 1.00411 1.19317 1.00077 0.80793 1.18621 1.49961 1.01250 1.03693 1.01001 1.96019 1.72341 1.19402 1.65086 1.95983 1.13200 1.96144 1.46335 1.65096 1.08195 1.35337 1.12022 1.20588 0.90807 0.85559 0.95754 1.84599 1.14858 1.92991 1.34895 0.84694 0.81814 0.85442 0.73045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -19.56 10.91 23.24 0.25 -19.30 14 2 C 0.01 0.13 5.40 87.24 0.47 0.61 14 3 Si 1.02 16.16 29.67 68.60 2.04 18.19 14 4 H -0.23 -3.28 7.11 99.48 0.71 -2.57 14 5 H -0.26 -4.18 7.11 99.48 0.71 -3.47 14 6 H -0.25 -4.04 7.11 99.48 0.71 -3.33 14 7 C -0.19 -5.41 9.10 24.81 0.23 -5.18 14 8 H 0.16 3.51 7.80 -2.91 -0.02 3.49 14 9 C -0.03 -1.28 5.79 -19.83 -0.11 -1.39 14 10 C -0.12 -5.01 8.85 22.77 0.20 -4.80 14 11 C -0.10 -4.74 9.48 22.02 0.21 -4.53 14 12 C 0.04 2.00 7.81 129.83 1.01 3.02 14 13 N 0.05 3.08 4.98 -49.56 -0.25 2.83 14 14 O -0.39 -26.62 19.72 3.51 0.07 -26.55 14 15 O -0.38 -24.38 19.04 3.52 0.07 -24.31 14 16 N -0.48 -25.99 10.04 -293.16 -2.94 -28.94 14 17 C 0.28 12.17 8.01 86.82 0.70 12.86 14 18 O -0.47 -15.88 13.03 -82.80 -1.08 -16.96 14 19 H 0.34 7.61 8.27 -92.71 -0.77 6.84 14 20 H 0.16 5.93 6.13 -2.91 -0.02 5.92 14 21 H 0.13 6.01 7.48 -2.91 -0.02 5.98 14 22 H 0.41 9.19 9.06 -74.06 -0.67 8.52 14 Total: -1.00 -74.58 221.89 1.48 -73.10 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.62 Total: 21.36 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 2.70 Total: 0.58 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -2.94 Total: -45.41 kcal Atomic # 8 Polarization: -66.88 SS G_CDS: -0.94 Total: -67.83 kcal Atomic # 14 Polarization: 16.16 SS G_CDS: 2.04 Total: 18.19 kcal Total: -74.58 1.48 -73.10 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307051913.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.036 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds