Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46970 * 2 1 4 4 C 1.50704 * 109.46778 * 119.99637 * 2 1 3 5 5 H 1.08000 * 119.99478 * 120.00068 * 4 2 1 6 6 C 1.37869 * 120.00115 * 300.00291 * 4 2 1 7 7 N 1.31511 * 120.00275 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99918 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46892 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47280 * 119.99760 * 8 6 4 11 11 H 1.48501 * 109.46819 * 239.99910 * 8 6 4 12 12 N 1.46900 * 109.47101 * 239.99847 * 2 1 3 13 13 C 1.47959 * 110.99870 * 173.40151 * 12 2 1 14 14 C 1.53939 * 86.17790 * 222.41841 * 13 12 2 15 15 C 1.53001 * 113.73432 * 138.07871 * 14 13 12 16 16 C 1.53789 * 113.61212 * 82.75998 * 15 14 13 17 17 C 1.54052 * 86.98216 * 140.01832 * 16 15 14 18 18 C 1.53780 * 87.08057 * 334.56934 * 17 16 15 19 19 C 1.48187 * 111.06996 * 73.96693 * 12 2 1 20 20 H 1.09000 * 109.47352 * 306.32397 * 1 2 3 21 21 H 1.09002 * 109.46962 * 66.32114 * 1 2 3 22 22 H 1.08995 * 109.47333 * 186.32090 * 1 2 3 23 23 H 0.97008 * 120.00372 * 180.02562 * 7 6 4 24 24 H 1.09000 * 113.76354 * 108.09654 * 13 12 2 25 25 H 1.09006 * 113.85727 * 336.74029 * 13 12 2 26 26 H 1.09001 * 113.72751 * 269.25353 * 14 13 12 27 27 H 1.08996 * 112.85075 * 311.56473 * 15 14 13 28 28 H 1.09002 * 113.61128 * 254.61226 * 16 15 14 29 29 H 1.08997 * 113.61749 * 25.51697 * 16 15 14 30 30 H 1.08997 * 113.62195 * 220.01934 * 17 16 15 31 31 H 1.09005 * 113.61188 * 89.11314 * 17 16 15 32 32 H 1.09000 * 113.61083 * 270.88137 * 18 17 16 33 33 H 1.08997 * 113.69573 * 139.98634 * 18 17 16 34 34 H 1.08997 * 113.76213 * 23.23859 * 19 12 2 35 35 H 1.08999 * 113.82335 * 251.80705 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5865 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 3.4901 -0.5763 -1.3156 14 6 3.2482 -0.3197 -2.8140 15 6 4.1191 0.7955 -3.3963 16 6 5.5311 0.3316 -3.7914 17 6 5.3899 1.2299 -5.0349 18 6 3.8688 1.0555 -4.8911 19 6 1.8372 0.1436 -2.4092 20 1 -0.3634 0.6087 0.8280 21 1 -0.3633 0.4127 -0.9412 22 1 -0.3634 -1.0214 0.1131 23 1 0.7094 1.1619 3.4844 24 1 4.0218 -1.5052 -1.1093 25 1 3.9080 0.2796 -0.7854 26 1 3.2555 -1.2251 -3.4209 27 1 4.1108 1.7001 -2.7883 28 1 6.3077 0.6592 -3.1002 29 1 5.5921 -0.7312 -4.0253 30 1 5.7965 0.7854 -5.9433 31 1 5.7291 2.2535 -4.8749 32 1 3.4762 0.1902 -5.4252 33 1 3.3031 1.9663 -5.0871 34 1 1.7689 1.2110 -2.1991 35 1 1.0506 -0.2112 -3.0751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307167492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = 42.232401 kcal Electronic energy + Delta-G solvation = -14063.582171 eV Core-core repulsion = 11869.837969 eV Total energy + Delta-G solvation = -2193.744202 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.70051 -37.50783 -33.47550 -30.50361 -27.19589 -26.09306 -25.34441 -24.27335 -23.48344 -20.03249 -19.19979 -18.87944 -16.32497 -15.52675 -15.16355 -14.83875 -14.22819 -13.44319 -13.12386 -12.58694 -12.34432 -12.19583 -11.98533 -11.72051 -11.37303 -11.00094 -10.78837 -10.67196 -10.47573 -10.43616 -10.33196 -10.11092 -9.89737 -9.63905 -9.10855 -8.81924 -8.43612 -7.55242 -5.98966 -4.03061 3.30818 3.38446 3.43662 4.43446 4.63035 4.78539 4.81640 4.93950 5.09506 5.33048 5.50779 5.56565 5.65922 5.84297 5.85253 5.95488 6.01725 6.10159 6.17386 6.28792 6.36682 6.43330 6.55948 6.61821 6.79143 6.86937 6.96446 7.11367 7.44101 7.52924 7.85429 8.11250 8.33622 8.55508 9.03560 9.61876 11.08410 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.048765 B = 0.007362 C = 0.006810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.039240 B = 3802.460356 C = 4110.783454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.180 3.820 3 H 0.004 0.996 4 C -0.501 4.501 5 H 0.060 0.940 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.478 5.478 13 C 0.029 3.971 14 C -0.111 4.111 15 C -0.100 4.100 16 C -0.135 4.135 17 C -0.144 4.144 18 C -0.135 4.135 19 C 0.007 3.993 20 H 0.079 0.921 21 H 0.006 0.994 22 H 0.034 0.966 23 H 0.259 0.741 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 0.809 -11.830 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.073 3.927 3 H 0.021 0.979 4 C -0.540 4.540 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.201 5.201 13 C -0.100 4.100 14 C -0.130 4.130 15 C -0.119 4.119 16 C -0.172 4.172 17 C -0.182 4.182 18 C -0.172 4.172 19 C -0.123 4.123 20 H 0.098 0.902 21 H 0.025 0.975 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.707 0.278 -11.610 12.940 hybrid contribution 0.516 0.466 1.055 1.264 sum 6.224 0.743 -10.555 12.275 Atomic orbital electron populations 1.21686 0.97673 1.00355 0.98645 1.19755 0.92890 0.92388 0.87685 0.97880 1.21117 1.30841 1.12209 0.89832 0.92142 1.24939 0.95219 0.95077 0.99038 1.69920 1.37131 1.23093 1.23236 0.86476 0.78604 0.79647 0.82915 1.19754 1.21137 1.21020 1.68554 1.06433 1.42026 1.03062 1.23535 0.92779 1.00759 0.92945 1.23054 0.95393 0.97549 0.96966 1.22548 0.95222 0.98634 0.95521 1.22933 0.97320 0.99650 0.97309 1.22874 0.96980 0.99996 0.98316 1.22885 0.95925 1.01562 0.96859 1.23792 0.96074 0.96910 0.95496 0.90216 0.97543 0.94725 0.93100 0.91103 0.91870 0.89424 0.89536 0.91769 0.90233 0.91968 0.90587 0.90287 0.91909 0.92424 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.05 37.16 0.34 -2.87 16 2 C 0.18 4.71 1.65 -68.86 -0.11 4.59 16 3 H 0.00 0.10 7.70 -51.93 -0.40 -0.30 16 4 C -0.50 -14.20 8.20 -34.44 -0.28 -14.48 16 5 H 0.06 1.73 7.69 -52.49 -0.40 1.33 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -26.06 11.39 55.43 0.63 -25.43 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.48 -10.75 5.97 -231.47 -1.38 -12.13 16 13 C 0.03 0.57 6.83 -2.76 -0.02 0.55 16 14 C -0.11 -1.78 3.54 -89.69 -0.32 -2.10 16 15 C -0.10 -1.36 3.37 -89.80 -0.30 -1.67 16 16 C -0.13 -1.59 7.66 -25.77 -0.20 -1.79 16 17 C -0.14 -1.51 8.09 -25.78 -0.21 -1.72 16 18 C -0.13 -1.56 7.64 -25.92 -0.20 -1.75 16 19 C 0.01 0.12 6.78 -2.64 -0.02 0.11 16 20 H 0.08 2.19 6.27 -51.93 -0.33 1.87 16 21 H 0.01 0.13 7.52 -51.93 -0.39 -0.26 16 22 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.06 1.32 7.81 -51.93 -0.41 0.91 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.10 7.69 -51.93 -0.40 0.70 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 278.79 15.07 4.20 4.20 Total: -1.00 -29.06 278.79 -9.09 -38.15 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.10 Total: -1.97 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.42 Total: -19.57 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.75 Total: -37.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.06 -9.09 -38.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307167492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.382 kcal (2) G-P(sol) polarization free energy of solvation -29.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds