Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46970 * 2 1 4 4 C 1.50704 * 109.46778 * 119.99637 * 2 1 3 5 5 H 1.08000 * 119.99478 * 120.00068 * 4 2 1 6 6 C 1.37869 * 120.00115 * 300.00291 * 4 2 1 7 7 N 1.31511 * 120.00275 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99918 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46892 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47280 * 119.99760 * 8 6 4 11 11 H 1.48501 * 109.46819 * 239.99910 * 8 6 4 12 12 N 1.46900 * 109.47101 * 239.99847 * 2 1 3 13 13 C 1.47959 * 110.99870 * 173.40151 * 12 2 1 14 14 C 1.53939 * 86.17790 * 222.41841 * 13 12 2 15 15 C 1.53001 * 113.73432 * 138.07871 * 14 13 12 16 16 C 1.53789 * 113.61212 * 82.75998 * 15 14 13 17 17 C 1.54052 * 86.98216 * 140.01832 * 16 15 14 18 18 C 1.53780 * 87.08057 * 334.56934 * 17 16 15 19 19 C 1.48187 * 111.06996 * 73.96693 * 12 2 1 20 20 H 1.09000 * 109.47352 * 306.32397 * 1 2 3 21 21 H 1.09002 * 109.46962 * 66.32114 * 1 2 3 22 22 H 1.08995 * 109.47333 * 186.32090 * 1 2 3 23 23 H 0.97008 * 120.00372 * 180.02562 * 7 6 4 24 24 H 1.09000 * 113.76354 * 108.09654 * 13 12 2 25 25 H 1.09006 * 113.85727 * 336.74029 * 13 12 2 26 26 H 1.09001 * 113.72751 * 269.25353 * 14 13 12 27 27 H 1.08996 * 112.85075 * 311.56473 * 15 14 13 28 28 H 1.09002 * 113.61128 * 254.61226 * 16 15 14 29 29 H 1.08997 * 113.61749 * 25.51697 * 16 15 14 30 30 H 1.08997 * 113.62195 * 220.01934 * 17 16 15 31 31 H 1.09005 * 113.61188 * 89.11314 * 17 16 15 32 32 H 1.09000 * 113.61083 * 270.88137 * 18 17 16 33 33 H 1.08997 * 113.69573 * 139.98634 * 18 17 16 34 34 H 1.08997 * 113.76213 * 23.23859 * 19 12 2 35 35 H 1.08999 * 113.82335 * 251.80705 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1473 -2.2862 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5865 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 3.4901 -0.5763 -1.3156 14 6 3.2482 -0.3197 -2.8140 15 6 4.1191 0.7955 -3.3963 16 6 5.5311 0.3316 -3.7914 17 6 5.3899 1.2299 -5.0349 18 6 3.8688 1.0555 -4.8911 19 6 1.8372 0.1436 -2.4092 20 1 -0.3634 0.6087 0.8280 21 1 -0.3633 0.4127 -0.9412 22 1 -0.3634 -1.0214 0.1131 23 1 0.7094 1.1619 3.4844 24 1 4.0218 -1.5052 -1.1093 25 1 3.9080 0.2796 -0.7854 26 1 3.2555 -1.2251 -3.4209 27 1 4.1108 1.7001 -2.7883 28 1 6.3077 0.6592 -3.1002 29 1 5.5921 -0.7312 -4.0253 30 1 5.7965 0.7854 -5.9433 31 1 5.7291 2.2535 -4.8749 32 1 3.4762 0.1902 -5.4252 33 1 3.3031 1.9663 -5.0871 34 1 1.7689 1.2110 -2.1991 35 1 1.0506 -0.2112 -3.0751 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307167492.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = 24.467950 kcal Electronic energy + Delta-G solvation = -14064.352496 eV Core-core repulsion = 11869.837969 eV Total energy + Delta-G solvation = -2194.514526 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.11194 -38.74795 -35.51438 -32.47381 -28.70411 -27.83051 -26.68120 -25.86463 -24.89038 -21.74795 -20.51120 -20.18805 -18.42259 -17.14330 -16.52528 -16.16275 -15.93240 -15.20206 -14.63845 -14.30874 -13.77423 -13.49762 -13.22576 -13.19292 -13.03720 -12.84127 -12.53155 -12.40504 -12.33533 -12.11637 -11.65142 -11.56061 -11.31260 -10.91854 -10.81521 -10.65613 -10.53732 -9.36093 -8.15456 -6.27783 1.38036 1.39462 1.51991 2.39526 3.12554 3.37786 3.44081 3.77886 3.92661 4.01778 4.26616 4.35807 4.47443 4.67119 4.71014 4.75516 4.85167 4.87363 4.93559 4.96065 4.96832 5.00548 5.07081 5.15471 5.20141 5.31438 5.44582 5.47524 5.55491 5.68206 5.71524 6.06360 6.27520 6.56690 6.85771 7.41523 8.91261 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.048765 B = 0.007362 C = 0.006810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.039240 B = 3802.460356 C = 4110.783454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.185 3.815 3 H -0.029 1.029 4 C -0.521 4.521 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.278 1.278 12 N -0.496 5.496 13 C 0.023 3.977 14 C -0.082 4.082 15 C -0.110 4.110 16 C -0.134 4.134 17 C -0.134 4.134 18 C -0.129 4.129 19 C 0.005 3.995 20 H 0.056 0.944 21 H 0.028 0.972 22 H 0.026 0.974 23 H 0.262 0.738 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.966 0.180 -13.073 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.077 3.923 3 H -0.012 1.012 4 C -0.559 4.559 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.204 1.204 12 N -0.219 5.219 13 C -0.106 4.106 14 C -0.100 4.100 15 C -0.129 4.129 16 C -0.171 4.171 17 C -0.172 4.172 18 C -0.166 4.166 19 C -0.124 4.124 20 H 0.075 0.925 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.559 -0.350 -12.870 14.449 hybrid contribution 0.242 0.674 1.422 1.592 sum 6.801 0.324 -11.448 13.320 Atomic orbital electron populations 1.21511 0.97456 0.99416 0.98830 1.19551 0.93033 0.90701 0.88990 1.01183 1.21355 1.31155 1.12198 0.91227 0.93043 1.25749 0.95301 0.95766 1.02022 1.70038 1.37805 1.24164 1.24079 0.85449 0.78204 0.78592 0.79056 1.19325 1.20376 1.20361 1.68494 1.08146 1.42453 1.02769 1.23554 0.91119 1.00058 0.95906 1.22892 0.93668 0.98881 0.94590 1.22552 0.96360 0.97183 0.96768 1.22957 0.95703 1.00461 0.97974 1.22835 0.95998 1.00074 0.98244 1.22884 0.97000 1.02133 0.94629 1.23865 0.98518 0.96008 0.93999 0.92533 0.95343 0.95441 0.92854 0.90990 0.93805 0.87719 0.91098 0.91979 0.89472 0.90210 0.90128 0.89331 0.91601 0.93329 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.91 9.05 71.98 0.65 -5.26 16 2 C 0.19 9.91 1.65 44.17 0.07 9.99 16 3 H -0.03 -1.73 7.70 -2.39 -0.02 -1.75 16 4 C -0.52 -30.06 8.20 25.60 0.21 -29.85 16 5 H 0.05 2.99 7.69 -2.91 -0.02 2.97 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -54.55 11.39 21.44 0.24 -54.31 16 8 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 N -0.50 -22.39 5.97 -886.25 -5.29 -27.68 16 13 C 0.02 0.91 6.83 86.41 0.59 1.50 16 14 C -0.08 -2.50 3.54 -10.15 -0.04 -2.54 16 15 C -0.11 -2.81 3.37 -10.26 -0.03 -2.84 16 16 C -0.13 -2.85 7.66 31.22 0.24 -2.61 16 17 C -0.13 -2.40 8.09 31.21 0.25 -2.14 16 18 C -0.13 -2.62 7.64 31.12 0.24 -2.38 16 19 C 0.01 0.18 6.78 86.36 0.59 0.77 16 20 H 0.06 3.18 6.27 -2.39 -0.01 3.16 16 21 H 0.03 1.29 7.52 -2.39 -0.02 1.27 16 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 24 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 25 H 0.04 1.89 7.81 -2.38 -0.02 1.88 16 26 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.87 7.69 -2.39 -0.02 1.85 16 35 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -62.37 278.79 1.23 -61.14 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.03 Total: 8.26 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 3.22 Total: -34.34 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -5.04 Total: -81.99 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -62.37 1.23 -61.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307167492.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.609 kcal (2) G-P(sol) polarization free energy of solvation -62.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds