Wall clock time and date at job start Mon Mar 30 2020 02:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.29827 * 118.35458 * 2 1 4 4 C 1.50308 * 122.88900 * 179.63032 * 3 2 1 5 5 H 1.09001 * 109.43070 * 256.41721 * 4 3 2 6 6 C 1.52999 * 109.38732 * 136.54339 * 4 3 2 7 7 C 1.53086 * 109.71740 * 16.49525 * 4 3 2 8 8 N 1.47236 * 108.47291 * 311.03406 * 7 4 3 9 9 C 1.46903 * 111.00343 * 192.19369 * 8 7 4 10 10 C 1.52995 * 109.46985 * 303.12049 * 9 8 7 11 11 C 1.50700 * 109.47100 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00122 * 359.97438 * 11 10 9 13 13 C 1.37887 * 120.00146 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99933 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00124 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47044 * 59.99532 * 15 13 11 17 17 H 1.48490 * 109.46993 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46556 * 300.00121 * 15 13 11 19 19 C 1.46846 * 110.20322 * 68.80604 * 8 7 4 20 20 H 1.09008 * 109.47012 * 269.99641 * 1 2 3 21 21 H 1.08999 * 109.47458 * 29.99891 * 1 2 3 22 22 H 1.08997 * 109.47071 * 150.00148 * 1 2 3 23 23 H 1.07992 * 118.55528 * 359.62501 * 3 2 1 24 24 H 1.08994 * 109.47517 * 299.77130 * 6 4 3 25 25 H 1.09003 * 109.47132 * 59.77892 * 6 4 3 26 26 H 1.09007 * 109.46636 * 179.76736 * 6 4 3 27 27 H 1.09007 * 109.63618 * 191.34536 * 7 4 3 28 28 H 1.08991 * 109.63815 * 70.73550 * 7 4 3 29 29 H 1.08997 * 109.46558 * 63.11868 * 9 8 7 30 30 H 1.08998 * 109.47228 * 183.11725 * 9 8 7 31 31 H 1.09007 * 109.47273 * 299.99344 * 10 9 8 32 32 H 1.08998 * 109.47402 * 59.99783 * 10 9 8 33 33 H 0.96993 * 120.00053 * 179.97438 * 14 13 11 34 34 H 1.09004 * 109.33478 * 69.31999 * 19 8 7 35 35 H 1.09002 * 109.33933 * 188.82288 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1425 0.0000 4 6 3.6220 1.2614 0.0081 5 1 3.9587 1.5337 1.0084 6 6 4.0511 2.3428 -0.9854 7 6 4.2484 -0.0765 -0.3934 8 7 3.6208 -1.1435 0.4039 9 6 4.3681 -2.4021 0.2801 10 6 4.4620 -2.7965 -1.1951 11 6 5.2291 -4.0874 -1.3222 12 1 5.6119 -4.5773 -0.4390 13 6 5.4425 -4.6431 -2.5659 14 7 4.9760 -4.0469 -3.6413 15 14 6.3928 -6.2436 -2.7233 16 1 5.6908 -7.3124 -1.9683 17 1 6.4840 -6.6263 -4.1552 18 1 7.7597 -6.0638 -2.1714 19 6 2.2202 -1.3212 0.0000 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 1.5340 2.0473 -0.0062 24 1 3.7163 2.0703 -1.9862 25 1 3.6054 3.2958 -0.7001 26 1 5.1374 2.4330 -0.9775 27 1 5.3200 -0.0534 -0.1952 28 1 4.0728 -0.2597 -1.4534 29 1 5.3713 -2.2703 0.6855 30 1 3.8526 -3.1867 0.8339 31 1 3.4587 -2.9284 -1.6006 32 1 4.9775 -2.0119 -1.7489 33 1 5.1263 -4.4376 -4.5163 34 1 2.1850 -1.7503 -1.0014 35 1 1.7265 -1.9979 0.6975 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307213516.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:09 Heat of formation + Delta-G solvation = -2.251094 kcal Electronic energy + Delta-G solvation = -14010.600419 eV Core-core repulsion = 11814.927268 eV Total energy + Delta-G solvation = -2195.673151 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.02369 -34.89037 -33.16755 -32.64573 -29.19522 -26.65521 -26.41657 -25.17701 -22.79871 -21.08114 -19.95084 -17.21282 -16.25258 -15.38687 -15.08614 -14.51158 -14.10937 -13.72016 -13.04822 -12.87798 -12.72013 -12.47982 -12.27108 -12.13160 -11.50750 -11.34637 -11.20610 -11.13769 -10.88251 -10.70076 -10.33930 -9.96702 -9.86783 -9.74272 -9.16157 -8.45951 -8.31358 -7.47146 -6.02011 -4.05083 2.54241 3.32101 3.36404 3.39012 4.42869 4.60677 4.95577 5.16644 5.32614 5.33860 5.58888 5.64357 5.66251 5.77521 5.89235 5.94499 6.01104 6.06467 6.19352 6.21441 6.29545 6.34177 6.50108 6.58161 6.70198 6.82537 6.93486 7.25358 7.54469 7.58036 7.73456 7.85750 7.99734 8.41562 9.01787 9.59020 11.08990 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.041433 B = 0.007305 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.623450 B = 3832.300270 C = 4061.446610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.123 4.123 3 C -0.155 4.155 4 C -0.056 4.056 5 H 0.078 0.922 6 C -0.141 4.141 7 C 0.057 3.943 8 N -0.537 5.537 9 C 0.055 3.945 10 C -0.009 4.009 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.083 3.917 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.098 0.902 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.017 0.983 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.058 0.942 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 9.663 5.933 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.123 4.123 3 C -0.173 4.173 4 C -0.075 4.075 5 H 0.096 0.904 6 C -0.199 4.199 7 C -0.071 4.071 8 N -0.260 5.260 9 C -0.072 4.072 10 C -0.047 4.047 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.045 4.045 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.081 0.919 23 H 0.116 0.884 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.458 9.778 6.252 12.825 hybrid contribution 0.464 -1.180 -1.105 1.682 sum -4.994 8.598 5.147 11.196 Atomic orbital electron populations 1.20842 0.92624 1.02121 1.01668 1.21103 0.95361 0.95246 1.00576 1.21956 0.95686 0.96606 1.03063 1.20074 0.92708 0.95299 0.99386 0.90377 1.21757 1.01034 0.97729 0.99357 1.22173 0.98343 0.90253 0.96377 1.62790 1.01602 1.07889 1.53720 1.22347 0.96876 0.88581 0.99403 1.19670 0.97206 0.96827 0.91041 1.21136 1.34835 1.07401 0.92572 0.92620 1.25030 0.95863 0.97525 0.95962 1.69955 1.45906 1.39504 0.98063 0.86644 0.80525 0.83850 0.76916 1.20207 1.21299 1.20199 1.20906 0.89237 0.94012 1.00319 0.91797 0.92287 0.91941 0.88383 0.92649 0.92932 0.92567 0.91008 0.93672 0.91802 0.92026 0.96523 0.96307 0.92954 0.92453 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.90 36.01 0.36 -1.06 16 2 C -0.12 -1.89 5.91 -101.01 -0.60 -2.49 16 3 C -0.15 -2.28 8.74 -35.89 -0.31 -2.59 16 4 C -0.06 -0.84 3.16 -91.92 -0.29 -1.13 16 5 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.14 -1.79 9.14 37.16 0.34 -1.45 16 7 C 0.06 1.03 3.97 -3.60 -0.01 1.02 16 8 N -0.54 -10.32 4.93 -236.12 -1.16 -11.48 16 9 C 0.05 1.18 5.28 -3.83 -0.02 1.16 16 10 C -0.01 -0.24 4.27 -27.89 -0.12 -0.36 16 11 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 12 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.08 1.50 5.18 -5.28 -0.03 1.47 16 20 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 21 H 0.06 0.65 7.93 -51.93 -0.41 0.24 16 22 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 23 H 0.10 1.25 7.86 -52.49 -0.41 0.84 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.29 8.06 -51.92 -0.42 0.87 16 28 H 0.04 0.92 6.93 -51.93 -0.36 0.56 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.31 8.12 -51.93 -0.42 0.89 16 31 H 0.02 0.46 6.43 -51.92 -0.33 0.13 16 32 H 0.02 0.52 6.64 -51.93 -0.35 0.17 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.06 1.17 6.21 -51.93 -0.32 0.85 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 278.53 15.07 4.20 4.20 Total: -1.00 -29.87 278.53 -8.29 -38.16 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -5.95 Total: -2.29 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -1.10 Total: -19.01 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.43 Total: -37.81 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.87 -8.29 -38.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307213516.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.913 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds