Wall clock time and date at job start Mon Mar 30 2020 02:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29826 * 118.35819 * 2 1 4 4 C 1.50312 * 122.89264 * 180.39644 * 3 2 1 5 5 H 1.08996 * 109.42732 * 103.50013 * 4 3 2 6 6 C 1.52992 * 109.42636 * 223.40089 * 4 3 2 7 7 C 1.53084 * 109.71005 * 343.45999 * 4 3 2 8 8 N 1.47239 * 108.47433 * 48.97982 * 7 4 3 9 9 C 1.46902 * 110.99977 * 167.80557 * 8 7 4 10 10 C 1.53001 * 109.47217 * 188.97766 * 9 8 7 11 11 C 1.50694 * 109.47168 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.46843 * 110.20643 * 291.19511 * 8 7 4 20 20 H 1.09001 * 109.47174 * 270.02509 * 1 2 3 21 21 H 1.09000 * 109.47128 * 30.02027 * 1 2 3 22 22 H 1.09002 * 109.47112 * 150.02985 * 1 2 3 23 23 H 1.08001 * 118.55615 * 0.36669 * 3 2 1 24 24 H 1.09003 * 109.47531 * 60.00309 * 6 4 3 25 25 H 1.09007 * 109.46663 * 180.02562 * 6 4 3 26 26 H 1.09003 * 109.47500 * 299.99619 * 6 4 3 27 27 H 1.09002 * 109.63706 * 289.28337 * 7 4 3 28 28 H 1.09004 * 109.63801 * 168.67633 * 7 4 3 29 29 H 1.09002 * 109.46978 * 68.98036 * 9 8 7 30 30 H 1.08998 * 109.47251 * 308.97554 * 9 8 7 31 31 H 1.09007 * 109.46922 * 59.99765 * 10 9 8 32 32 H 1.09003 * 109.46836 * 300.00520 * 10 9 8 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.33414 * 171.17042 * 19 8 7 35 35 H 1.08995 * 109.33435 * 290.84261 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1425 0.0000 4 6 3.6220 1.2613 -0.0087 5 1 3.9584 1.5325 -1.0094 6 6 4.0524 2.3433 0.9836 7 6 4.2484 -0.0764 0.3933 8 7 3.6207 -1.1437 -0.4034 9 6 4.3680 -2.4023 -0.2790 10 6 3.8252 -3.4193 -1.2850 11 6 4.5914 -4.7106 -1.1570 12 1 5.3859 -4.7975 -0.4306 13 6 4.2782 -5.7813 -1.9674 14 7 3.3104 -5.6757 -2.8517 15 14 5.2285 -7.3817 -1.8092 16 1 6.4006 -7.3536 -2.7206 17 1 5.6943 -7.5445 -0.4086 18 1 4.3460 -8.5193 -2.1728 19 6 2.2201 -1.3212 0.0006 20 1 -0.3633 0.0005 1.0277 21 1 -0.3633 0.8898 -0.5141 22 1 -0.3633 -0.8903 -0.5134 23 1 1.5341 2.0473 0.0061 24 1 3.7148 2.0737 1.9843 25 1 5.1390 2.4304 0.9774 26 1 3.6103 3.2971 0.6956 27 1 4.0728 -0.2592 1.4535 28 1 5.3200 -0.0534 0.1952 29 1 4.2538 -2.7944 0.7316 30 1 5.4235 -2.2196 -0.4808 31 1 3.9393 -3.0272 -2.2956 32 1 2.7696 -3.6020 -1.0832 33 1 3.0904 -6.4289 -3.4220 34 1 1.7264 -1.9981 -0.6966 35 1 2.1850 -1.7472 1.0033 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307213517.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:12 Heat of formation + Delta-G solvation = -20.740076 kcal Electronic energy + Delta-G solvation = -13824.236559 eV Core-core repulsion = 11627.761665 eV Total energy + Delta-G solvation = -2196.474893 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.34163 -36.41728 -34.75414 -34.34106 -31.37705 -27.91545 -27.68304 -26.93167 -24.38215 -22.24721 -21.73595 -18.62003 -18.56718 -16.83039 -16.63891 -16.21055 -15.49847 -15.36911 -14.73771 -14.34037 -14.08783 -13.98420 -13.67407 -13.23234 -13.18406 -12.91062 -12.72558 -12.62951 -12.48224 -12.31393 -11.99022 -11.79273 -11.36986 -11.27244 -11.05140 -10.56010 -9.65575 -9.22976 -8.21109 -6.33128 1.33184 1.39618 1.41694 1.52621 2.39560 3.02885 3.12099 3.74375 3.90805 4.09772 4.33234 4.36607 4.43827 4.48427 4.58744 4.60557 4.73381 4.78641 4.78937 4.90755 4.93900 5.03088 5.12488 5.21574 5.26264 5.40822 5.41373 5.57469 5.66250 5.80502 5.99462 6.16791 6.25328 6.34385 6.83758 7.36140 8.91257 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.047137 B = 0.006690 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.872349 B = 4184.136733 C = 4620.310133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.144 4.144 3 C -0.146 4.146 4 C -0.058 4.058 5 H 0.079 0.921 6 C -0.132 4.132 7 C 0.053 3.947 8 N -0.548 5.548 9 C 0.078 3.922 10 C 0.037 3.963 11 C -0.546 4.546 12 H 0.061 0.939 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.969 3.031 16 H -0.271 1.271 17 H -0.263 1.263 18 H -0.281 1.281 19 C 0.091 3.909 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.128 0.872 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.032 0.968 28 H 0.078 0.922 29 H 0.019 0.981 30 H 0.067 0.933 31 H -0.009 1.009 32 H -0.008 1.008 33 H 0.264 0.736 34 H 0.061 0.939 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 14.027 7.828 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.144 4.144 3 C -0.165 4.165 4 C -0.076 4.076 5 H 0.097 0.903 6 C -0.190 4.190 7 C -0.075 4.075 8 N -0.272 5.272 9 C -0.050 4.050 10 C 0.000 4.000 11 C -0.585 4.585 12 H 0.079 0.921 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.793 3.207 16 H -0.196 1.196 17 H -0.187 1.187 18 H -0.206 1.206 19 C -0.036 4.036 20 H 0.095 0.905 21 H 0.098 0.902 22 H 0.073 0.927 23 H 0.146 0.854 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.009 0.991 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.707 14.074 7.207 15.904 hybrid contribution 0.222 -1.478 0.503 1.577 sum -1.486 12.596 7.709 14.842 Atomic orbital electron populations 1.20852 0.90518 1.02841 1.02666 1.21183 0.96983 0.93893 1.02340 1.22256 0.95947 0.97190 1.01060 1.20123 0.92677 0.94297 1.00508 0.90294 1.21698 1.01723 0.97498 0.98045 1.22364 0.99019 0.91429 0.94659 1.62417 1.02179 1.07263 1.55344 1.22031 0.97222 0.88462 0.97238 1.18902 0.94921 0.92548 0.93655 1.21623 1.18525 0.98386 1.19943 0.92117 1.25994 0.96140 1.02912 0.94640 1.70120 1.31287 1.32802 1.23005 0.85394 0.78333 0.78025 0.78953 1.19628 1.18698 1.20630 1.20836 0.88953 0.95910 0.97941 0.90529 0.90239 0.92736 0.85402 0.92742 0.91685 0.90884 0.94945 0.90345 0.96253 0.91498 0.99078 0.98948 0.92707 0.92047 0.94924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.65 9.90 71.24 0.71 -1.95 16 2 C -0.14 -4.27 5.91 -15.45 -0.09 -4.36 16 3 C -0.15 -3.78 8.74 26.73 0.23 -3.55 16 4 C -0.06 -1.46 3.16 -11.64 -0.04 -1.49 16 5 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 6 C -0.13 -2.40 9.15 71.98 0.66 -1.74 16 7 C 0.05 1.63 4.89 86.27 0.42 2.05 16 8 N -0.55 -21.59 4.72 -900.93 -4.25 -25.84 16 9 C 0.08 3.50 4.89 86.30 0.42 3.92 16 10 C 0.04 2.08 4.89 29.85 0.15 2.22 16 11 C -0.55 -32.08 9.11 25.60 0.23 -31.84 16 12 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 13 C 0.00 0.06 5.46 84.66 0.46 0.53 16 14 N -0.93 -58.13 13.29 21.45 0.28 -57.85 16 15 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 16 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 C 0.09 3.43 4.95 85.39 0.42 3.85 16 20 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.08 1.57 7.94 -2.39 -0.02 1.55 16 22 H 0.05 1.40 8.06 -2.39 -0.02 1.38 16 23 H 0.13 2.61 7.87 -2.91 -0.02 2.59 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.03 0.98 8.05 -2.39 -0.02 0.96 16 28 H 0.08 2.29 7.92 -2.39 -0.02 2.27 16 29 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 30 H 0.07 2.90 7.94 -2.39 -0.02 2.88 16 31 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 32 H -0.01 -0.47 6.67 -2.39 -0.02 -0.48 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.06 2.64 6.69 -2.39 -0.02 2.62 16 35 H 0.03 1.23 8.06 -2.39 -0.02 1.21 16 Total: -1.00 -66.09 282.07 2.66 -63.44 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.02 Total: 5.65 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.58 Total: -32.37 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -3.97 Total: -83.68 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.09 2.66 -63.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307213517.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.695 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds