Wall clock time and date at job start Mon Mar 30 2020 03:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29453 * 1 3 3 Si 1.86792 * 120.00115 * 2 1 4 4 H 1.48502 * 109.47248 * 240.00207 * 3 2 1 5 5 H 1.48500 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47095 * 120.00466 * 3 2 1 7 7 C 1.46672 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99783 * 164.96967 * 7 2 1 9 9 C 1.39728 * 120.00209 * 344.96347 * 7 2 1 10 10 C 1.41619 * 121.07087 * 336.16087 * 9 7 2 11 11 N 1.31082 * 120.23121 * 180.26787 * 10 9 7 12 12 C 1.32315 * 122.94282 * 0.02562 * 11 10 9 13 13 N 1.48010 * 118.89007 * 179.97438 * 12 11 10 14 14 O 1.31695 * 120.00250 * 180.02562 * 13 12 11 15 15 O 1.31697 * 119.99742 * 0.02562 * 13 12 11 16 16 C 1.37879 * 122.22549 * 359.97438 * 12 11 10 17 17 C 1.39203 * 119.31889 * 0.02562 * 16 12 11 18 18 O 1.35160 * 121.28520 * 180.02562 * 17 16 12 19 19 H 0.97001 * 119.99586 * 359.97438 * 1 2 3 20 20 H 1.07998 * 119.88141 * 0.27335 * 10 9 7 21 21 H 1.08002 * 120.34008 * 179.97438 * 16 12 11 22 22 H 0.96708 * 113.99696 * 269.97344 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2945 0.0000 0.0000 3 14 2.2285 1.6176 0.0000 4 1 3.0823 1.6963 -1.2125 5 1 1.2636 2.7464 0.0006 6 1 3.0824 1.6962 1.2125 7 6 2.0278 -1.2703 -0.0006 8 1 3.0801 -1.2862 -0.2431 9 6 1.3650 -2.4598 0.3128 10 6 0.1841 -2.4544 1.0945 11 7 -0.4215 -3.5805 1.3830 12 6 0.0191 -4.7595 0.9750 13 7 -0.7354 -5.9752 1.3539 14 8 -0.3163 -7.1599 0.9601 15 8 -1.8261 -5.8720 2.0849 16 6 1.1575 -4.8941 0.2088 17 6 1.8744 -3.7568 -0.1523 18 8 2.9953 -3.8426 -0.9028 19 1 -0.4849 0.8401 0.0004 20 1 -0.2190 -1.5191 1.4539 21 1 1.4900 -5.8718 -0.1073 22 1 3.8074 -3.9403 -0.3869 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307295756.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:03 Heat of formation + Delta-G solvation = -29.160940 kcal Electronic energy + Delta-G solvation = -13128.314356 eV Core-core repulsion = 10458.549112 eV Total energy + Delta-G solvation = -2669.765244 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.90622 -38.91546 -37.89037 -36.59863 -34.66494 -32.74282 -32.03470 -28.98179 -26.15737 -24.15694 -23.11493 -20.21481 -19.87713 -18.70076 -18.06532 -17.43219 -16.88478 -16.47478 -16.11917 -15.65694 -14.87905 -14.22889 -14.19312 -13.73397 -13.63049 -13.12005 -12.15296 -11.78975 -11.78023 -11.54198 -11.41415 -11.38348 -10.64322 -10.49575 -10.24324 -9.54967 -7.18472 -1.27790 0.47703 0.58243 0.96351 1.31960 1.51372 1.63941 2.04387 2.17917 2.92370 3.19050 3.67160 4.04046 4.16669 4.22006 4.66803 4.70057 4.97065 5.14494 5.47781 5.58081 5.63485 5.95140 6.41730 6.95237 7.28806 7.30507 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.049676 B = 0.009199 C = 0.007904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.522249 B = 3042.969255 C = 3541.773146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.005 3.995 3 Si 1.024 2.976 4 H -0.240 1.240 5 H -0.258 1.258 6 H -0.240 1.240 7 C -0.181 4.181 8 H 0.160 0.840 9 C -0.055 4.055 10 C 0.129 3.871 11 N -0.479 5.479 12 C 0.027 3.973 13 N 0.048 4.952 14 O -0.387 6.387 15 O -0.387 6.387 16 C -0.112 4.112 17 C 0.052 3.948 18 O -0.473 6.473 19 H 0.340 0.660 20 H 0.184 0.816 21 H 0.131 0.869 22 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.705 15.778 -3.276 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.230 4.230 3 Si 0.838 3.162 4 H -0.163 1.163 5 H -0.182 1.182 6 H -0.163 1.163 7 C -0.208 4.208 8 H 0.177 0.823 9 C -0.062 4.062 10 C -0.060 4.060 11 N -0.189 5.189 12 C -0.194 4.194 13 N 0.441 4.559 14 O -0.520 6.520 15 O -0.524 6.524 16 C -0.135 4.135 17 C 0.001 3.999 18 O -0.284 6.284 19 H 0.156 0.844 20 H 0.201 0.799 21 H 0.149 0.851 22 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 10.265 15.489 -3.275 18.868 hybrid contribution 0.275 -0.635 0.111 0.701 sum 10.540 14.854 -3.164 18.486 Atomic orbital electron populations 1.68955 1.11135 1.37036 1.13793 1.29364 0.95962 1.06311 0.91382 0.84541 0.78766 0.70731 0.82139 1.16293 1.18177 1.16280 1.22934 0.99338 0.88767 1.09786 0.82263 1.20446 0.95971 0.93662 0.96134 1.23488 0.92791 0.92959 0.96748 1.65412 1.33040 0.97854 1.22619 1.19296 0.99070 0.83400 1.17666 1.49886 1.01683 1.03198 1.01085 1.95981 1.76934 1.11415 1.67683 1.96018 1.16105 1.95505 1.44773 1.21192 0.94666 1.00345 0.97259 1.19357 0.92253 0.89297 0.99019 1.84592 1.15068 1.94790 1.33948 0.84450 0.79944 0.85131 0.73918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -20.19 10.94 23.24 0.25 -19.93 14 2 C 0.00 0.11 5.39 87.25 0.47 0.58 14 3 Si 1.02 16.05 29.67 68.60 2.04 18.08 14 4 H -0.24 -3.62 7.11 99.48 0.71 -2.91 14 5 H -0.26 -4.04 7.11 99.48 0.71 -3.33 14 6 H -0.24 -3.65 7.11 99.48 0.71 -2.94 14 7 C -0.18 -5.20 9.13 24.83 0.23 -4.97 14 8 H 0.16 3.40 7.87 -2.91 -0.02 3.38 14 9 C -0.05 -2.11 5.78 -19.81 -0.11 -2.22 14 10 C 0.13 5.71 10.02 85.64 0.86 6.57 14 11 N -0.48 -25.98 9.94 -184.21 -1.83 -27.81 14 12 C 0.03 1.54 7.80 129.43 1.01 2.55 14 13 N 0.05 3.10 4.98 -49.87 -0.25 2.85 14 14 O -0.39 -24.79 19.04 3.52 0.07 -24.72 14 15 O -0.39 -26.31 19.73 3.52 0.07 -26.24 14 16 C -0.11 -5.43 9.55 22.42 0.21 -5.22 14 17 C 0.05 2.08 7.00 24.77 0.17 2.25 14 18 O -0.47 -14.64 13.11 -84.39 -1.11 -15.74 14 19 H 0.34 8.00 8.27 -92.71 -0.77 7.23 14 20 H 0.18 7.26 6.09 -2.91 -0.02 7.24 14 21 H 0.13 6.23 7.50 -2.91 -0.02 6.21 14 22 H 0.40 7.75 9.06 -74.05 -0.67 7.08 14 Total: -1.00 -74.72 222.17 2.70 -72.02 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.62 Total: 21.96 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 2.84 Total: -0.46 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -1.82 Total: -44.90 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -0.97 Total: -66.71 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: 2.04 Total: 18.08 kcal Total: -74.72 2.70 -72.02 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307295756.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.862 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds