Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47241 * 2 1 4 4 C 1.50702 * 109.47045 * 239.99674 * 2 1 3 5 5 H 1.08001 * 119.99760 * 239.99564 * 4 2 1 6 6 C 1.37872 * 120.00047 * 60.00439 * 4 2 1 7 7 N 1.31519 * 119.99730 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46903 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47118 * 119.99501 * 8 6 4 11 11 H 1.48497 * 109.47077 * 240.00024 * 8 6 4 12 12 N 1.46902 * 109.46971 * 119.99922 * 2 1 3 13 13 C 1.47852 * 110.99979 * 300.91614 * 12 2 1 14 14 C 1.54901 * 104.79874 * 213.63547 * 13 12 2 15 15 C 1.55148 * 101.65021 * 37.07165 * 14 13 12 16 16 H 1.09007 * 110.70481 * 82.72993 * 15 14 13 17 17 C 1.52999 * 110.85446 * 205.88774 * 15 14 13 18 18 C 1.52999 * 117.50171 * 242.30626 * 17 15 14 19 19 C 1.52994 * 60.00051 * 252.51503 * 18 17 15 20 20 C 1.47445 * 110.99755 * 180.02562 * 12 2 1 21 21 H 1.08999 * 109.46961 * 54.45261 * 1 2 3 22 22 H 1.08997 * 109.47003 * 174.44685 * 1 2 3 23 23 H 1.09003 * 109.47385 * 294.45141 * 1 2 3 24 24 H 0.97002 * 119.99798 * 180.02562 * 7 6 4 25 25 H 1.08991 * 110.37106 * 332.47189 * 13 12 2 26 26 H 1.09003 * 110.36554 * 94.80968 * 13 12 2 27 27 H 1.08992 * 110.99417 * 278.98372 * 14 13 12 28 28 H 1.08992 * 110.99300 * 155.16118 * 14 13 12 29 29 H 1.09004 * 115.55003 * 28.02143 * 17 15 14 30 30 H 1.09000 * 117.49689 * 0.02562 * 18 17 15 31 31 H 1.08999 * 117.49669 * 145.01796 * 18 17 15 32 32 H 1.09000 * 117.49977 * 252.50684 * 19 18 17 33 33 H 1.09003 * 117.52060 * 107.48468 * 19 18 17 34 34 H 1.09003 * 109.88629 * 242.66168 * 20 12 2 35 35 H 1.09003 * 109.88938 * 3.68493 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1484 -2.2858 -3.6037 10 1 1.1679 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 1.5276 -0.0349 2.4289 14 6 2.6714 -0.2137 3.4581 15 6 3.9275 -0.0534 2.5616 16 1 4.1617 1.0006 2.4113 17 6 5.1247 -0.7909 3.1645 18 6 6.3418 0.0458 3.5641 19 6 6.4060 -0.8577 2.3311 20 6 3.4936 -0.7116 1.2338 21 1 -0.3633 0.5975 -0.8361 22 1 -0.3633 -1.0228 -0.0994 23 1 -0.3634 0.4254 0.9355 24 1 0.7083 1.1608 -3.4844 25 1 1.3441 1.0237 2.2455 26 1 0.6193 -0.5227 2.7825 27 1 2.6384 -1.2048 3.9103 28 1 2.6348 0.5634 4.2214 29 1 4.8817 -1.6542 3.7841 30 1 6.2893 1.1218 3.3978 31 1 6.8995 -0.2668 4.4468 32 1 7.0062 -1.7648 2.4025 33 1 6.3959 -0.3766 1.3530 34 1 3.8521 -1.7403 1.1946 35 1 3.8915 -0.1480 0.3900 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307440038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = 19.869561 kcal Electronic energy + Delta-G solvation = -14204.955737 eV Core-core repulsion = 12010.241810 eV Total energy + Delta-G solvation = -2194.713927 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.83818 -36.45776 -33.48331 -30.99010 -28.40098 -27.51809 -24.97813 -22.49253 -21.89141 -21.21223 -19.68778 -19.02744 -16.10139 -15.65262 -15.19473 -14.88441 -14.06964 -13.51296 -13.06453 -12.56792 -12.20636 -11.98599 -11.68470 -11.40856 -11.22939 -11.01774 -10.86186 -10.70916 -10.56402 -10.32958 -10.21829 -9.94465 -9.84340 -9.78093 -9.40487 -8.83847 -8.40915 -7.07960 -5.97895 -4.01305 3.31493 3.39239 3.44393 3.95824 4.44390 4.79672 5.00934 5.06020 5.12508 5.32819 5.34384 5.55888 5.70657 5.73720 5.78667 6.02633 6.03498 6.10553 6.25316 6.30800 6.42251 6.45928 6.61938 6.78989 6.87505 6.90876 7.11151 7.13934 7.56620 7.75571 7.89610 8.23951 8.39094 8.64543 9.06300 9.63593 11.09462 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033206 B = 0.009231 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.026638 B = 3032.520534 C = 3673.296310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.207 3.793 3 H -0.003 1.003 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.527 5.527 13 C 0.044 3.956 14 C -0.120 4.120 15 C -0.084 4.084 16 H 0.068 0.932 17 C -0.132 4.132 18 C -0.187 4.187 19 C -0.179 4.179 20 C 0.065 3.935 21 H 0.080 0.920 22 H 0.034 0.966 23 H 0.007 0.993 24 H 0.259 0.741 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.327 -1.082 10.158 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.100 3.900 3 H 0.015 0.985 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.252 5.252 13 C -0.085 4.085 14 C -0.158 4.158 15 C -0.103 4.103 16 H 0.087 0.913 17 C -0.151 4.151 18 C -0.224 4.224 19 C -0.216 4.216 20 C -0.063 4.063 21 H 0.099 0.901 22 H 0.053 0.947 23 H 0.026 0.974 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.042 -1.476 9.962 11.744 hybrid contribution 0.572 0.446 -0.898 1.154 sum 6.614 -1.029 9.065 11.268 Atomic orbital electron populations 1.21794 0.97762 1.00328 0.98909 1.19445 0.92383 0.91783 0.86367 0.98514 1.21185 1.30741 1.12156 0.89774 0.91978 1.24939 0.95289 0.95100 0.99011 1.69923 1.37149 1.23161 1.23209 0.86485 0.78603 0.79656 0.82956 1.19715 1.21040 1.21201 1.63674 1.06635 1.52555 1.02309 1.22944 0.97299 0.97108 0.91104 1.22729 0.94607 1.01265 0.97215 1.22095 0.93076 0.98663 0.96504 0.91330 1.22251 0.89108 1.01055 1.02687 1.22992 1.02572 0.97886 0.98921 1.22919 1.01013 1.01664 0.96046 1.22640 0.89240 0.99840 0.94581 0.90130 0.94653 0.97372 0.93123 0.94584 0.91523 0.91232 0.92012 0.88027 0.89122 0.89371 0.89159 0.88565 0.91929 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.87 37.16 0.33 -2.94 16 2 C 0.21 5.37 1.65 -68.86 -0.11 5.26 16 3 H 0.00 -0.08 8.11 -51.93 -0.42 -0.50 16 4 C -0.50 -14.01 7.69 -34.44 -0.26 -14.27 16 5 H 0.06 1.75 7.43 -52.49 -0.39 1.36 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.95 11.38 55.43 0.63 -25.32 16 8 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.53 -11.78 5.02 -224.60 -1.13 -12.90 16 13 C 0.04 0.82 5.32 -2.30 -0.01 0.81 16 14 C -0.12 -1.85 6.53 -24.59 -0.16 -2.01 16 15 C -0.08 -1.36 3.12 -88.74 -0.28 -1.63 16 16 H 0.07 1.13 7.95 -51.92 -0.41 0.72 16 17 C -0.13 -1.80 5.12 -90.62 -0.46 -2.27 16 18 C -0.19 -2.21 10.19 -26.73 -0.27 -2.48 16 19 C -0.18 -2.31 9.94 -26.74 -0.27 -2.57 16 20 C 0.07 1.31 5.37 -2.78 -0.01 1.29 16 21 H 0.08 2.20 6.24 -51.93 -0.32 1.87 16 22 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.01 0.17 6.83 -51.93 -0.35 -0.19 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.04 0.70 7.61 -51.93 -0.40 0.31 16 26 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 27 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.32 7.94 -51.93 -0.41 0.90 16 30 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.25 7.83 -51.93 -0.41 0.84 16 35 H 0.06 1.35 7.05 -51.93 -0.37 0.99 16 LS Contribution 276.43 15.07 4.17 4.17 Total: -1.00 -28.77 276.43 -8.94 -37.71 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.98 Total: -0.99 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -1.61 Total: -19.31 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.50 Total: -38.23 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.77 -8.94 -37.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307440038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.578 kcal (2) G-P(sol) polarization free energy of solvation -28.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds