Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47241 * 2 1 4 4 C 1.50702 * 109.47045 * 239.99674 * 2 1 3 5 5 H 1.08001 * 119.99760 * 239.99564 * 4 2 1 6 6 C 1.37872 * 120.00047 * 60.00439 * 4 2 1 7 7 N 1.31519 * 119.99730 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46903 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47118 * 119.99501 * 8 6 4 11 11 H 1.48497 * 109.47077 * 240.00024 * 8 6 4 12 12 N 1.46902 * 109.46971 * 119.99922 * 2 1 3 13 13 C 1.47852 * 110.99979 * 300.91614 * 12 2 1 14 14 C 1.54901 * 104.79874 * 213.63547 * 13 12 2 15 15 C 1.55148 * 101.65021 * 37.07165 * 14 13 12 16 16 H 1.09007 * 110.70481 * 82.72993 * 15 14 13 17 17 C 1.52999 * 110.85446 * 205.88774 * 15 14 13 18 18 C 1.52999 * 117.50171 * 242.30626 * 17 15 14 19 19 C 1.52994 * 60.00051 * 252.51503 * 18 17 15 20 20 C 1.47445 * 110.99755 * 180.02562 * 12 2 1 21 21 H 1.08999 * 109.46961 * 54.45261 * 1 2 3 22 22 H 1.08997 * 109.47003 * 174.44685 * 1 2 3 23 23 H 1.09003 * 109.47385 * 294.45141 * 1 2 3 24 24 H 0.97002 * 119.99798 * 180.02562 * 7 6 4 25 25 H 1.08991 * 110.37106 * 332.47189 * 13 12 2 26 26 H 1.09003 * 110.36554 * 94.80968 * 13 12 2 27 27 H 1.08992 * 110.99417 * 278.98372 * 14 13 12 28 28 H 1.08992 * 110.99300 * 155.16118 * 14 13 12 29 29 H 1.09004 * 115.55003 * 28.02143 * 17 15 14 30 30 H 1.09000 * 117.49689 * 0.02562 * 18 17 15 31 31 H 1.08999 * 117.49669 * 145.01796 * 18 17 15 32 32 H 1.09000 * 117.49977 * 252.50684 * 19 18 17 33 33 H 1.09003 * 117.52060 * 107.48468 * 19 18 17 34 34 H 1.09003 * 109.88629 * 242.66168 * 20 12 2 35 35 H 1.09003 * 109.88938 * 3.68493 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1484 -2.2858 -3.6037 10 1 1.1679 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 1.5276 -0.0349 2.4289 14 6 2.6714 -0.2137 3.4581 15 6 3.9275 -0.0534 2.5616 16 1 4.1617 1.0006 2.4113 17 6 5.1247 -0.7909 3.1645 18 6 6.3418 0.0458 3.5641 19 6 6.4060 -0.8577 2.3311 20 6 3.4936 -0.7116 1.2338 21 1 -0.3633 0.5975 -0.8361 22 1 -0.3633 -1.0228 -0.0994 23 1 -0.3634 0.4254 0.9355 24 1 0.7083 1.1608 -3.4844 25 1 1.3441 1.0237 2.2455 26 1 0.6193 -0.5227 2.7825 27 1 2.6384 -1.2048 3.9103 28 1 2.6348 0.5634 4.2214 29 1 4.8817 -1.6542 3.7841 30 1 6.2893 1.1218 3.3978 31 1 6.8995 -0.2668 4.4468 32 1 7.0062 -1.7648 2.4025 33 1 6.3959 -0.3766 1.3530 34 1 3.8521 -1.7403 1.1946 35 1 3.8915 -0.1480 0.3900 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307440038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = 2.844590 kcal Electronic energy + Delta-G solvation = -14205.693995 eV Core-core repulsion = 12010.241810 eV Total energy + Delta-G solvation = -2195.452185 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.29482 -37.78506 -35.39289 -32.85174 -29.98936 -29.23874 -27.08089 -23.86521 -23.00918 -22.75198 -21.21756 -20.58740 -18.22693 -17.21742 -16.62898 -16.36585 -15.73860 -15.06410 -14.79102 -14.16930 -13.81540 -13.65263 -13.45785 -12.91038 -12.67797 -12.55364 -12.41819 -12.33555 -12.32016 -12.11092 -11.84959 -11.69505 -11.45820 -10.97520 -10.94180 -10.65890 -10.56054 -8.89830 -8.13840 -6.25159 1.38559 1.40045 1.52550 2.40542 2.91955 3.14367 3.45385 3.67587 3.83843 3.96506 4.15847 4.31808 4.42730 4.51605 4.61061 4.75040 4.78448 4.82560 4.90151 4.98579 5.05583 5.07913 5.08288 5.18215 5.23241 5.30909 5.34382 5.46276 5.50243 5.71801 5.77446 6.23558 6.41297 6.71472 6.90053 7.44128 8.92910 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033206 B = 0.009231 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.026638 B = 3032.520534 C = 3673.296310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.213 3.787 3 H -0.040 1.040 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.280 1.280 12 N -0.539 5.539 13 C 0.037 3.963 14 C -0.106 4.106 15 C -0.075 4.075 16 H 0.060 0.940 17 C -0.142 4.142 18 C -0.167 4.167 19 C -0.189 4.189 20 C 0.067 3.933 21 H 0.056 0.944 22 H 0.029 0.971 23 H 0.031 0.969 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.259 -1.877 11.582 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 H -0.022 1.022 4 C -0.556 4.556 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.193 1.193 10 H -0.203 1.203 11 H -0.205 1.205 12 N -0.264 5.264 13 C -0.091 4.091 14 C -0.144 4.144 15 C -0.095 4.095 16 H 0.079 0.921 17 C -0.161 4.161 18 C -0.204 4.204 19 C -0.226 4.226 20 C -0.061 4.061 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.978 -2.272 11.404 13.561 hybrid contribution 0.281 0.717 -1.326 1.533 sum 7.259 -1.555 10.078 12.517 Atomic orbital electron populations 1.21609 0.97291 0.99534 0.99134 1.19222 0.92698 0.89850 0.87698 1.02249 1.21411 1.30952 1.12101 0.91121 0.92864 1.25737 0.95399 0.95796 1.01957 1.70042 1.37879 1.24250 1.24014 0.85472 0.78217 0.78615 0.79154 1.19255 1.20332 1.20548 1.63601 1.08079 1.52374 1.02341 1.23066 0.99154 0.96195 0.90660 1.22694 0.91990 1.03141 0.96534 1.21968 0.94859 0.98125 0.94521 0.92106 1.22189 0.88403 1.01953 1.03511 1.23066 1.00729 0.97592 0.98976 1.22965 1.01017 1.02782 0.95792 1.22581 0.88006 0.99613 0.95905 0.92522 0.95199 0.94992 0.92906 0.95722 0.90569 0.89698 0.89263 0.86633 0.89220 0.86914 0.87564 0.90395 0.92008 0.95502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.87 71.98 0.64 -5.39 16 2 C 0.21 11.39 1.65 44.17 0.07 11.46 16 3 H -0.04 -2.38 8.11 -2.39 -0.02 -2.40 16 4 C -0.52 -29.77 7.69 25.60 0.20 -29.57 16 5 H 0.05 3.08 7.43 -2.91 -0.02 3.06 16 6 C 0.01 0.54 5.30 84.65 0.45 0.99 16 7 N -0.92 -54.60 11.38 21.45 0.24 -54.36 16 8 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 N -0.54 -24.32 5.02 -864.51 -4.34 -28.66 16 13 C 0.04 1.36 5.32 86.77 0.46 1.82 16 14 C -0.11 -2.99 6.53 31.98 0.21 -2.78 16 15 C -0.08 -2.34 3.12 -9.58 -0.03 -2.37 16 16 H 0.06 1.97 7.95 -2.38 -0.02 1.95 16 17 C -0.14 -3.52 5.12 -10.80 -0.06 -3.58 16 18 C -0.17 -3.45 10.19 30.59 0.31 -3.14 16 19 C -0.19 -4.53 9.94 30.59 0.30 -4.23 16 20 C 0.07 2.73 5.37 86.68 0.47 3.20 16 21 H 0.06 3.16 6.24 -2.39 -0.01 3.15 16 22 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.03 1.43 6.83 -2.39 -0.02 1.41 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 25 H 0.02 0.95 7.61 -2.39 -0.02 0.94 16 26 H 0.08 2.63 8.10 -2.39 -0.02 2.62 16 27 H 0.08 2.18 7.91 -2.39 -0.02 2.16 16 28 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.12 2.58 7.94 -2.38 -0.02 2.57 16 30 H 0.09 1.89 8.07 -2.39 -0.02 1.87 16 31 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 2.48 7.83 -2.39 -0.02 2.46 16 35 H 0.03 1.25 7.05 -2.39 -0.02 1.23 16 Total: -1.00 -62.62 276.43 1.99 -60.64 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.03 Total: 9.03 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 3.02 Total: -33.60 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -4.10 Total: -83.01 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -62.62 1.99 -60.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307440038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.481 kcal (2) G-P(sol) polarization free energy of solvation -62.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds