Wall clock time and date at job start Mon Mar 30 2020 03:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29558 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48501 * 109.46907 * 90.00062 * 3 2 1 5 5 H 1.48498 * 109.46858 * 210.00040 * 3 2 1 6 6 H 1.48498 * 109.47177 * 330.00113 * 3 2 1 7 7 C 1.46436 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99970 * 14.28815 * 7 2 1 9 9 C 1.40308 * 120.00249 * 194.29290 * 7 2 1 10 10 C 1.41230 * 119.72696 * 188.50008 * 9 7 2 11 11 C 1.36810 * 119.20552 * 179.74594 * 10 9 7 12 12 C 1.39675 * 118.63350 * 0.50922 * 11 10 9 13 13 O 1.35261 * 120.31183 * 179.70155 * 12 11 10 14 14 C 1.40607 * 119.38028 * 359.72783 * 12 11 10 15 15 N 1.48017 * 119.62372 * 179.97438 * 14 12 11 16 16 O 1.31699 * 120.00020 * 180.02562 * 15 14 12 17 17 O 1.31701 * 119.99664 * 0.02562 * 15 14 12 18 18 N 1.30710 * 120.75039 * 0.02562 * 14 12 11 19 19 H 0.97000 * 119.99862 * 174.75957 * 1 2 3 20 20 H 1.08001 * 120.39868 * 359.97438 * 10 9 7 21 21 H 1.08001 * 120.67941 * 180.23752 * 11 10 9 22 22 H 0.96695 * 113.99939 * 270.02519 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2956 0.0000 0.0000 3 14 2.2295 1.6178 0.0000 4 1 2.4770 2.0464 1.4001 5 1 3.5271 1.4402 -0.7000 6 1 1.4270 2.6527 -0.7000 7 6 2.0278 -1.2681 -0.0006 8 1 1.5129 -2.1890 -0.2318 9 6 3.3983 -1.2871 0.2994 10 6 4.1374 -2.4776 0.1232 11 6 5.4742 -2.4827 0.4140 12 6 6.0607 -1.3067 0.8874 13 8 7.3784 -1.2753 1.1912 14 6 5.2684 -0.1560 1.0458 15 7 5.8842 1.0930 1.5476 16 8 5.1488 2.1750 1.6993 17 8 7.1674 1.1221 1.8425 18 7 3.9940 -0.1769 0.7558 19 1 -0.4850 -0.8365 -0.0767 20 1 3.6539 -3.3723 -0.2403 21 1 6.0630 -3.3788 0.2844 22 1 7.5761 -1.5079 2.1087 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307504284.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:52 Heat of formation + Delta-G solvation = -1.541269 kcal Electronic energy + Delta-G solvation = -13555.606957 eV Core-core repulsion = 10887.039392 eV Total energy + Delta-G solvation = -2668.567565 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.79965 -37.67408 -36.73195 -34.03472 -33.57748 -31.86912 -30.55573 -26.83856 -25.03489 -22.36672 -21.43587 -19.17518 -18.06041 -17.76623 -17.18907 -15.74972 -15.52465 -14.73414 -14.16225 -14.14557 -12.95260 -12.73768 -12.64538 -12.17597 -11.25159 -10.99287 -10.72283 -10.51075 -10.33135 -10.04600 -9.94175 -9.61197 -9.25964 -8.66555 -8.30243 -7.84205 -5.31750 0.08652 1.76652 1.91563 2.11843 3.31667 3.41721 3.68982 3.99082 4.14874 4.65988 4.83852 5.12046 5.48971 5.69441 5.79797 6.42917 6.48688 6.56065 6.75752 6.92303 7.23560 7.45351 7.59355 7.86684 8.16993 8.68671 9.35364 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.034518 B = 0.015337 C = 0.010842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.985160 B = 1825.202125 C = 2581.824078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.047 3.953 3 Si 1.128 2.872 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.312 1.312 7 C -0.434 4.434 8 H 0.100 0.900 9 C 0.235 3.765 10 C -0.202 4.202 11 C -0.065 4.065 12 C -0.036 4.036 13 O -0.470 6.470 14 C 0.254 3.746 15 N -0.016 5.016 16 O -0.173 6.173 17 O -0.168 6.168 18 N -0.530 5.530 19 H 0.295 0.705 20 H 0.128 0.872 21 H 0.133 0.867 22 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -4.402 0.632 5.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.184 4.184 3 Si 0.956 3.044 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.242 1.242 7 C -0.463 4.463 8 H 0.118 0.882 9 C 0.116 3.884 10 C -0.226 4.226 11 C -0.089 4.089 12 C -0.093 4.093 13 O -0.276 6.276 14 C 0.029 3.971 15 N 0.462 4.538 16 O -0.367 6.367 17 O -0.361 6.361 18 N -0.256 5.256 19 H 0.108 0.892 20 H 0.146 0.854 21 H 0.151 0.849 22 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.885 -2.541 0.001 3.845 hybrid contribution 0.601 -2.343 0.505 2.471 sum 3.486 -4.885 0.506 6.022 Atomic orbital electron populations 1.70162 1.08770 1.34140 1.23255 1.29446 0.94838 1.06039 0.88029 0.82415 0.72452 0.69145 0.80343 1.18538 1.20442 1.24249 1.22223 0.92139 0.96796 1.35177 0.88182 1.18124 0.93414 0.85155 0.91748 1.21757 0.93643 0.99700 1.07495 1.21020 0.94804 0.95786 0.97252 1.18312 0.84827 0.91587 1.14614 1.84805 1.18988 1.91331 1.32478 1.21249 0.91587 0.81563 1.02651 1.50684 1.02262 1.03681 0.97171 1.96225 1.60268 1.22193 1.58017 1.96193 0.92344 1.92982 1.54563 1.65736 1.07651 1.30326 1.21861 0.89170 0.85418 0.84915 0.77668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.75 13.58 55.98 0.76 -16.99 14 2 C 0.05 1.15 5.69 -15.21 -0.09 1.06 14 3 Si 1.13 27.00 25.09 -169.99 -4.26 22.74 14 4 H -0.26 -6.45 7.01 56.52 0.40 -6.05 14 5 H -0.28 -7.00 6.47 56.52 0.37 -6.63 14 6 H -0.31 -7.16 7.11 56.52 0.40 -6.76 14 7 C -0.43 -10.19 9.79 -35.51 -0.35 -10.54 14 8 H 0.10 2.20 8.06 -52.48 -0.42 1.78 14 9 C 0.24 5.49 6.32 -85.01 -0.54 4.95 14 10 C -0.20 -3.96 9.79 -38.96 -0.38 -4.34 14 11 C -0.07 -1.20 10.06 -39.56 -0.40 -1.60 14 12 C -0.04 -0.75 6.78 -38.15 -0.26 -1.01 14 13 O -0.47 -8.70 11.43 -39.51 -0.45 -9.15 14 14 C 0.25 6.09 7.86 -146.23 -1.15 4.94 14 15 N -0.02 -0.39 4.98 33.14 0.17 -0.22 14 16 O -0.17 -4.38 18.57 -31.57 -0.59 -4.96 14 17 O -0.17 -3.84 17.90 -39.19 -0.70 -4.54 14 18 N -0.53 -13.29 4.77 -7.91 -0.04 -13.33 14 19 H 0.30 6.48 8.74 -40.82 -0.36 6.12 14 20 H 0.13 2.14 8.06 -52.49 -0.42 1.72 14 21 H 0.13 1.94 8.06 -52.49 -0.42 1.51 14 22 H 0.37 5.19 9.06 45.56 0.41 5.61 14 LS Contribution 215.18 15.07 3.24 3.24 Total: -1.00 -27.35 215.18 -5.08 -32.43 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -0.05 Total: -2.69 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.16 Total: -6.54 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.89 Total: -30.54 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -1.74 Total: -18.65 kcal Atomic # 14 Polarization: 27.00 SS G_CDS: -4.26 Total: 22.74 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -27.35 -5.08 -32.43 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307504284.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.892 kcal (2) G-P(sol) polarization free energy of solvation -27.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds