Wall clock time and date at job start Mon Mar 30 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36942 * 119.99826 * 2 1 4 4 H 1.08004 * 119.99562 * 161.79929 * 3 2 1 5 5 C 1.38810 * 120.00012 * 341.80025 * 3 2 1 6 6 N 1.31616 * 120.00100 * 329.32459 * 5 3 2 7 7 Si 1.86796 * 119.99765 * 149.32958 * 5 3 2 8 8 H 1.48503 * 109.46929 * 269.99703 * 7 5 3 9 9 H 1.48501 * 109.47627 * 29.99751 * 7 5 3 10 10 H 1.48504 * 109.47277 * 150.00083 * 7 5 3 11 11 C 1.46492 * 120.00117 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.47343 * 187.52052 * 11 2 1 13 13 C 1.53001 * 109.47255 * 307.52452 * 11 2 1 14 14 C 1.52998 * 109.47271 * 120.00071 * 13 11 2 15 15 C 1.52991 * 109.47489 * 59.99919 * 14 13 11 16 16 C 1.52998 * 109.47107 * 299.99972 * 15 14 13 17 17 C 1.52995 * 109.47244 * 0.02562 * 16 15 14 18 18 C 1.53001 * 109.46955 * 299.99972 * 17 16 15 19 19 C 1.52999 * 109.47029 * 299.99539 * 14 13 11 20 20 H 1.08999 * 109.46519 * 84.28101 * 1 2 3 21 21 H 1.09002 * 109.47066 * 204.28053 * 1 2 3 22 22 H 1.09003 * 109.46979 * 324.28336 * 1 2 3 23 23 H 0.97001 * 120.00032 * 355.24007 * 6 5 3 24 24 H 1.09002 * 109.46891 * 239.99841 * 13 11 2 25 25 H 1.08998 * 109.47004 * 359.97438 * 13 11 2 26 26 H 1.09006 * 109.46860 * 180.02562 * 14 13 11 27 27 H 1.09002 * 109.47175 * 59.99921 * 15 14 13 28 28 H 1.09000 * 109.47396 * 180.02562 * 15 14 13 29 29 H 1.09005 * 109.47253 * 239.99931 * 16 15 14 30 30 H 1.09000 * 109.47101 * 120.00091 * 16 15 14 31 31 H 1.08995 * 109.47618 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.46888 * 299.99936 * 18 17 16 33 33 H 1.08998 * 109.47455 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47193 * 180.02562 * 19 14 13 35 35 H 1.08998 * 109.47334 * 300.00384 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1892 1.2093 0.2922 5 6 1.5077 2.3580 -0.3755 6 7 0.5329 2.3204 -1.2590 7 14 2.0274 3.9886 0.3731 8 1 1.2363 4.2427 1.6040 9 1 3.4718 3.9387 0.7146 10 1 1.7872 5.0808 -0.6039 11 6 2.1975 -1.2686 0.0006 12 1 3.2615 -1.0738 0.1350 13 6 1.6916 -2.1492 1.1450 14 6 1.1319 -3.4542 0.5754 15 6 2.2340 -4.1922 -0.1870 16 6 2.7399 -3.3117 -1.3315 17 6 1.9753 -1.9865 -1.3317 18 6 0.4817 -2.2594 -1.5200 19 6 -0.0244 -3.1407 -0.3762 20 1 -0.3632 0.1024 -1.0226 21 1 -0.3633 -0.9368 0.4226 22 1 -0.3633 0.8344 0.5999 23 1 0.3090 1.4854 -1.6989 24 1 2.5154 -2.3725 1.8230 25 1 0.9067 -1.6232 1.6884 26 1 0.7711 -4.0812 1.3907 27 1 3.0578 -4.4155 0.4910 28 1 1.8351 -5.1217 -0.5932 29 1 2.5813 -3.8233 -2.2809 30 1 3.8039 -3.1169 -1.1970 31 1 2.3353 -1.3594 -2.1472 32 1 0.3227 -2.7708 -2.4695 33 1 -0.0630 -1.3153 -1.5206 34 1 -0.4236 -4.0704 -0.7817 35 1 -0.8097 -2.6149 0.1669 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307566169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:47 Heat of formation + Delta-G solvation = 14.830929 kcal Electronic energy + Delta-G solvation = -15077.306842 eV Core-core repulsion = 12882.374423 eV Total energy + Delta-G solvation = -2194.932419 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13197 -35.17354 -31.34249 -30.84179 -30.61133 -28.22444 -26.02937 -22.84706 -22.12560 -21.36116 -20.17168 -17.45332 -16.13009 -15.97402 -15.31966 -15.07842 -13.66172 -13.54684 -13.10209 -12.60913 -12.11805 -11.65827 -11.65618 -11.53179 -11.47488 -11.14508 -11.07606 -10.86840 -10.59159 -10.32207 -10.14173 -10.00368 -9.54710 -9.38442 -9.21536 -9.07893 -8.22077 -6.82155 -5.98201 -3.04565 3.56266 3.58095 3.74611 4.66251 5.00260 5.04108 5.13040 5.42188 5.57489 5.67678 5.74010 5.82211 5.84857 5.86207 5.90569 6.00216 6.06836 6.12505 6.27378 6.35721 6.47155 6.57573 6.59062 6.64712 6.77260 6.85342 6.95322 7.01137 7.07559 7.20388 7.28003 8.06463 8.65375 9.23184 9.97327 10.36526 11.30021 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053729 B = 0.010035 C = 0.009733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.006299 B = 2789.522438 C = 2876.219318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.597 5.597 3 C -0.354 4.354 4 H 0.059 0.941 5 C -0.025 4.025 6 N -0.916 5.916 7 Si 1.061 2.939 8 H -0.295 1.295 9 H -0.294 1.294 10 H -0.292 1.292 11 C 0.186 3.814 12 H 0.058 0.942 13 C -0.127 4.127 14 C -0.084 4.084 15 C -0.109 4.109 16 C -0.111 4.111 17 C -0.100 4.100 18 C -0.130 4.130 19 C -0.110 4.110 20 H 0.019 0.981 21 H 0.032 0.968 22 H 0.036 0.964 23 H 0.270 0.730 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -11.289 2.021 11.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.319 5.319 3 C -0.483 4.483 4 H 0.077 0.923 5 C -0.227 4.227 6 N -0.558 5.558 7 Si 0.892 3.108 8 H -0.223 1.223 9 H -0.220 1.220 10 H -0.219 1.219 11 C 0.078 3.922 12 H 0.076 0.924 13 C -0.166 4.166 14 C -0.103 4.103 15 C -0.146 4.146 16 C -0.149 4.149 17 C -0.121 4.121 18 C -0.167 4.167 19 C -0.147 4.147 20 H 0.037 0.963 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.640 -9.627 2.082 9.870 hybrid contribution 0.426 -1.659 -0.152 1.719 sum 1.065 -11.286 1.930 11.499 Atomic orbital electron populations 1.21228 0.84454 0.97922 0.98064 1.44088 1.00824 1.01036 1.85991 1.20030 0.97503 0.86124 1.44598 0.92292 1.25613 0.98882 1.01065 0.97146 1.70774 1.33841 1.29462 1.21701 0.83568 0.74967 0.76176 0.76117 1.22275 1.22023 1.21855 1.20284 0.95356 0.85512 0.91015 0.92402 1.22134 1.00399 0.95260 0.98777 1.21022 0.95528 0.96750 0.96951 1.21503 0.97967 0.97696 0.97463 1.21525 0.99351 0.96429 0.97621 1.21608 0.94881 0.94988 1.00643 1.21920 0.97069 1.01143 0.96562 1.21557 0.97291 0.98823 0.97024 0.96349 0.94990 0.94564 0.91813 0.93046 0.91382 0.92403 0.92622 0.92890 0.93004 0.92631 0.91782 0.93803 0.89276 0.93194 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.06 6.46 59.85 0.39 3.45 16 2 N -0.60 -14.99 2.70 -173.51 -0.47 -15.46 16 3 C -0.35 -10.03 9.48 -15.06 -0.14 -10.18 16 4 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 5 C -0.02 -0.72 4.69 -17.43 -0.08 -0.80 16 6 N -0.92 -27.88 12.74 55.49 0.71 -27.17 16 7 Si 1.06 25.92 30.01 -169.99 -5.10 20.82 16 8 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 C 0.19 3.92 2.75 -67.96 -0.19 3.73 16 12 H 0.06 1.28 7.83 -51.93 -0.41 0.87 16 13 C -0.13 -2.28 5.08 -26.73 -0.14 -2.41 16 14 C -0.08 -1.28 3.19 -90.63 -0.29 -1.57 16 15 C -0.11 -1.52 5.71 -26.74 -0.15 -1.67 16 16 C -0.11 -1.72 5.71 -26.73 -0.15 -1.87 16 17 C -0.10 -1.90 2.91 -90.64 -0.26 -2.17 16 18 C -0.13 -2.33 5.12 -26.73 -0.14 -2.47 16 19 C -0.11 -1.72 5.18 -26.73 -0.14 -1.86 16 20 H 0.02 0.48 4.62 -51.93 -0.24 0.24 16 21 H 0.03 0.66 3.59 -51.93 -0.19 0.48 16 22 H 0.04 0.95 7.49 -51.93 -0.39 0.56 16 23 H 0.27 8.21 5.95 -40.82 -0.24 7.96 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.32 6.46 -51.93 -0.34 0.98 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.83 4.04 -51.93 -0.21 1.62 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.96 6.44 -51.93 -0.33 0.63 16 LS Contribution 250.62 15.07 3.78 3.78 Total: -1.00 -29.78 250.62 -7.74 -37.52 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.36 Total: -1.67 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -1.29 Total: -17.82 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.24 Total: -42.63 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.10 Total: 20.82 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.78 -7.74 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307566169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.355 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds