Wall clock time and date at job start Mon Mar 30 2020 03:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36942 * 119.99826 * 2 1 4 4 H 1.08004 * 119.99562 * 161.79929 * 3 2 1 5 5 C 1.38810 * 120.00012 * 341.80025 * 3 2 1 6 6 N 1.31616 * 120.00100 * 329.32459 * 5 3 2 7 7 Si 1.86796 * 119.99765 * 149.32958 * 5 3 2 8 8 H 1.48503 * 109.46929 * 269.99703 * 7 5 3 9 9 H 1.48501 * 109.47627 * 29.99751 * 7 5 3 10 10 H 1.48504 * 109.47277 * 150.00083 * 7 5 3 11 11 C 1.46492 * 120.00117 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.47343 * 187.52052 * 11 2 1 13 13 C 1.53001 * 109.47255 * 307.52452 * 11 2 1 14 14 C 1.52998 * 109.47271 * 120.00071 * 13 11 2 15 15 C 1.52991 * 109.47489 * 59.99919 * 14 13 11 16 16 C 1.52998 * 109.47107 * 299.99972 * 15 14 13 17 17 C 1.52995 * 109.47244 * 0.02562 * 16 15 14 18 18 C 1.53001 * 109.46955 * 299.99972 * 17 16 15 19 19 C 1.52999 * 109.47029 * 299.99539 * 14 13 11 20 20 H 1.08999 * 109.46519 * 84.28101 * 1 2 3 21 21 H 1.09002 * 109.47066 * 204.28053 * 1 2 3 22 22 H 1.09003 * 109.46979 * 324.28336 * 1 2 3 23 23 H 0.97001 * 120.00032 * 355.24007 * 6 5 3 24 24 H 1.09002 * 109.46891 * 239.99841 * 13 11 2 25 25 H 1.08998 * 109.47004 * 359.97438 * 13 11 2 26 26 H 1.09006 * 109.46860 * 180.02562 * 14 13 11 27 27 H 1.09002 * 109.47175 * 59.99921 * 15 14 13 28 28 H 1.09000 * 109.47396 * 180.02562 * 15 14 13 29 29 H 1.09005 * 109.47253 * 239.99931 * 16 15 14 30 30 H 1.09000 * 109.47101 * 120.00091 * 16 15 14 31 31 H 1.08995 * 109.47618 * 180.02562 * 17 16 15 32 32 H 1.09005 * 109.46888 * 299.99936 * 18 17 16 33 33 H 1.08998 * 109.47455 * 180.02562 * 18 17 16 34 34 H 1.09000 * 109.47193 * 180.02562 * 19 14 13 35 35 H 1.08998 * 109.47334 * 300.00384 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1892 1.2093 0.2922 5 6 1.5077 2.3580 -0.3755 6 7 0.5329 2.3204 -1.2590 7 14 2.0274 3.9886 0.3731 8 1 1.2363 4.2427 1.6040 9 1 3.4718 3.9387 0.7146 10 1 1.7872 5.0808 -0.6039 11 6 2.1975 -1.2686 0.0006 12 1 3.2615 -1.0738 0.1350 13 6 1.6916 -2.1492 1.1450 14 6 1.1319 -3.4542 0.5754 15 6 2.2340 -4.1922 -0.1870 16 6 2.7399 -3.3117 -1.3315 17 6 1.9753 -1.9865 -1.3317 18 6 0.4817 -2.2594 -1.5200 19 6 -0.0244 -3.1407 -0.3762 20 1 -0.3632 0.1024 -1.0226 21 1 -0.3633 -0.9368 0.4226 22 1 -0.3633 0.8344 0.5999 23 1 0.3090 1.4854 -1.6989 24 1 2.5154 -2.3725 1.8230 25 1 0.9067 -1.6232 1.6884 26 1 0.7711 -4.0812 1.3907 27 1 3.0578 -4.4155 0.4910 28 1 1.8351 -5.1217 -0.5932 29 1 2.5813 -3.8233 -2.2809 30 1 3.8039 -3.1169 -1.1970 31 1 2.3353 -1.3594 -2.1472 32 1 0.3227 -2.7708 -2.4695 33 1 -0.0630 -1.3153 -1.5206 34 1 -0.4236 -4.0704 -0.7817 35 1 -0.8097 -2.6149 0.1669 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307566169.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:47 Heat of formation + Delta-G solvation = -2.034543 kcal Electronic energy + Delta-G solvation = -15078.038184 eV Core-core repulsion = 12882.374423 eV Total energy + Delta-G solvation = -2195.663761 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.58645 -37.08853 -33.28786 -32.19855 -32.00316 -29.91709 -28.05159 -24.73043 -23.38702 -22.75676 -21.91868 -19.55824 -17.63132 -17.33935 -16.89629 -16.57914 -15.55029 -15.53446 -14.75298 -14.26137 -13.61116 -13.08631 -13.01926 -12.94589 -12.87390 -12.84406 -12.68425 -12.62394 -12.43082 -12.15397 -11.91032 -11.52017 -11.47553 -10.84630 -10.62405 -10.59692 -10.36711 -8.91628 -8.24447 -5.28282 1.56035 1.63495 1.81119 2.66035 3.20519 3.49764 3.72404 3.81525 3.95780 4.36111 4.44931 4.48554 4.49630 4.51604 4.53367 4.58940 4.63890 4.65233 4.82494 4.92659 4.94818 5.07008 5.14558 5.19643 5.30331 5.37801 5.49804 5.51002 5.55171 5.61704 5.67164 5.84189 6.40541 7.09761 7.84908 8.23081 9.01464 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.053729 B = 0.010035 C = 0.009733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.006299 B = 2789.522438 C = 2876.219318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.147 3.853 2 N -0.612 5.612 3 C -0.361 4.361 4 H 0.050 0.950 5 C -0.078 4.078 6 N -0.943 5.943 7 Si 1.112 2.888 8 H -0.286 1.286 9 H -0.275 1.275 10 H -0.295 1.295 11 C 0.177 3.823 12 H 0.038 0.962 13 C -0.120 4.120 14 C -0.080 4.080 15 C -0.103 4.103 16 C -0.106 4.106 17 C -0.098 4.098 18 C -0.129 4.129 19 C -0.107 4.107 20 H 0.002 0.998 21 H 0.064 0.936 22 H 0.003 0.997 23 H 0.257 0.743 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 -13.540 2.972 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.335 5.335 3 C -0.490 4.490 4 H 0.068 0.932 5 C -0.274 4.274 6 N -0.587 5.587 7 Si 0.937 3.063 8 H -0.213 1.213 9 H -0.200 1.200 10 H -0.221 1.221 11 C 0.071 3.929 12 H 0.056 0.944 13 C -0.159 4.159 14 C -0.098 4.098 15 C -0.141 4.141 16 C -0.144 4.144 17 C -0.119 4.119 18 C -0.167 4.167 19 C -0.144 4.144 20 H 0.019 0.981 21 H 0.082 0.918 22 H 0.022 0.978 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.954 -11.922 3.044 12.341 hybrid contribution 0.378 -0.994 -0.477 1.165 sum 1.332 -12.916 2.567 13.236 Atomic orbital electron populations 1.21025 0.83982 0.98088 0.96647 1.44310 1.01354 1.01758 1.86115 1.20267 0.97452 0.87805 1.43511 0.93197 1.26958 0.98880 1.04469 0.97131 1.70888 1.35526 1.28810 1.23439 0.82887 0.75776 0.72253 0.75363 1.21276 1.20005 1.22150 1.20518 0.93978 0.84770 0.93652 0.94385 1.22024 1.00419 0.96066 0.97401 1.21046 0.95618 0.95427 0.97738 1.21505 0.97986 0.97884 0.96712 1.21488 0.98808 0.94537 0.99583 1.21472 0.96362 0.96339 0.97707 1.21852 0.95734 1.00363 0.98712 1.21555 0.97346 0.99419 0.96061 0.98059 0.91754 0.97845 0.93224 0.91660 0.93020 0.89496 0.91153 0.90234 0.91444 0.92596 0.95743 0.92373 0.92607 0.90203 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.29 6.46 127.77 0.82 8.12 16 2 N -0.61 -31.66 2.70 -702.86 -1.90 -33.56 16 3 C -0.36 -21.07 9.48 84.03 0.80 -20.28 16 4 H 0.05 2.94 7.89 -2.91 -0.02 2.92 16 5 C -0.08 -4.61 4.69 84.86 0.40 -4.21 16 6 N -0.94 -59.44 12.74 21.65 0.28 -59.16 16 7 Si 1.11 53.17 30.01 68.60 2.06 55.23 16 8 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 11 C 0.18 7.49 2.75 44.98 0.12 7.61 16 12 H 0.04 1.71 7.83 -2.39 -0.02 1.69 16 13 C -0.12 -4.09 5.08 30.59 0.16 -3.94 16 14 C -0.08 -2.11 3.19 -10.80 -0.03 -2.14 16 15 C -0.10 -2.41 5.71 30.59 0.17 -2.23 16 16 C -0.11 -3.01 5.71 30.59 0.17 -2.83 16 17 C -0.10 -3.70 2.91 -10.81 -0.03 -3.73 16 18 C -0.13 -4.52 5.12 30.60 0.16 -4.37 16 19 C -0.11 -3.00 5.18 30.59 0.16 -2.84 16 20 H 0.00 0.10 4.62 -2.39 -0.01 0.09 16 21 H 0.06 2.70 3.59 -2.39 -0.01 2.69 16 22 H 0.00 0.16 7.49 -2.39 -0.02 0.14 16 23 H 0.26 16.41 5.95 -92.71 -0.55 15.86 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.05 1.93 6.46 -2.39 -0.02 1.91 16 26 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.06 2.33 4.04 -2.39 -0.01 2.32 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.59 6.44 -2.39 -0.02 1.57 16 Total: -1.00 -66.31 250.62 4.61 -61.70 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.27 Total: 6.64 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 2.90 Total: -30.85 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -1.62 Total: -92.72 kcal Atomic # 14 Polarization: 53.17 SS G_CDS: 2.06 Total: 55.23 kcal Total: -66.31 4.61 -61.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307566169.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.669 kcal (2) G-P(sol) polarization free energy of solvation -66.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds