Wall clock time and date at job start Mon Mar 30 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36940 * 119.99365 * 2 1 4 4 H 1.07997 * 119.99673 * 170.76516 * 3 2 1 5 5 C 1.38810 * 120.00161 * 350.77117 * 3 2 1 6 6 N 1.31620 * 120.00078 * 340.64160 * 5 3 2 7 7 Si 1.86801 * 120.00003 * 160.64425 * 5 3 2 8 8 H 1.48497 * 109.46990 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47083 * 119.99849 * 7 5 3 10 10 H 1.48494 * 109.47087 * 239.99840 * 7 5 3 11 11 C 1.46494 * 120.00266 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.47194 * 353.75602 * 11 2 1 13 13 C 1.52998 * 109.47118 * 233.75384 * 11 2 1 14 14 C 1.53007 * 109.47068 * 239.99992 * 13 11 2 15 15 C 1.52996 * 109.47411 * 300.00242 * 14 13 11 16 16 C 1.53005 * 109.47028 * 59.99624 * 15 14 13 17 17 C 1.52995 * 109.47162 * 0.02562 * 16 15 14 18 18 C 1.52998 * 109.47289 * 59.99769 * 17 16 15 19 19 C 1.52998 * 109.47118 * 299.99936 * 18 17 16 20 20 H 1.09004 * 109.46320 * 185.72635 * 1 2 3 21 21 H 1.08997 * 109.47538 * 305.72198 * 1 2 3 22 22 H 1.08994 * 109.47232 * 65.73324 * 1 2 3 23 23 H 0.97002 * 119.99933 * 180.02562 * 6 5 3 24 24 H 1.08996 * 109.46958 * 120.00555 * 13 11 2 25 25 H 1.09001 * 109.47402 * 359.97438 * 13 11 2 26 26 H 1.08997 * 109.47048 * 179.97438 * 14 13 11 27 27 H 1.08995 * 109.47106 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.46539 * 300.00260 * 15 14 13 29 29 H 1.08997 * 109.47050 * 239.99794 * 16 15 14 30 30 H 1.09003 * 109.46783 * 120.00465 * 16 15 14 31 31 H 1.09004 * 109.47131 * 180.02562 * 17 16 15 32 32 H 1.08994 * 109.47360 * 60.00346 * 18 17 16 33 33 H 1.09007 * 109.46821 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.47270 * 240.00536 * 19 18 17 35 35 H 1.08995 * 109.47350 * 120.00093 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2191 1.1921 0.1501 5 6 1.4690 2.3803 -0.1928 6 7 0.2735 2.3750 -0.7434 7 14 2.2497 3.9951 0.3291 8 1 3.5869 3.7307 0.9183 9 1 2.3960 4.8796 -0.8548 10 1 1.3866 4.6585 1.3391 11 6 2.1976 -1.2686 -0.0006 12 1 1.4946 -2.0942 0.1108 13 6 3.1912 -1.2843 1.1628 14 6 4.6119 -1.4454 0.6179 15 6 4.7146 -2.7598 -0.1583 16 6 3.7209 -2.7441 -1.3216 17 6 2.9562 -1.4189 -1.3213 18 6 3.9433 -0.2604 -1.4780 19 6 4.9369 -0.2762 -0.3147 20 1 -0.3632 -1.0226 0.1025 21 1 -0.3634 0.6000 0.8343 22 1 -0.3633 0.4223 -0.9368 23 1 -0.2020 3.2096 -0.8784 24 1 2.9602 -2.1174 1.8266 25 1 3.1184 -0.3477 1.7155 26 1 5.3198 -1.4561 1.4467 27 1 5.7268 -2.8746 -0.5460 28 1 4.4834 -3.5927 0.5057 29 1 3.0180 -3.5696 -1.2102 30 1 4.2611 -2.8513 -2.2623 31 1 2.2480 -1.4079 -2.1498 32 1 4.4834 -0.3679 -2.4186 33 1 3.3984 0.6837 -1.4773 34 1 4.8639 0.6605 0.2382 35 1 5.9489 -0.3912 -0.7027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307566172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:50 Heat of formation + Delta-G solvation = 16.740964 kcal Electronic energy + Delta-G solvation = -15161.969602 eV Core-core repulsion = 12967.120009 eV Total energy + Delta-G solvation = -2194.849593 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86852 -34.85344 -31.31287 -30.58883 -30.27223 -28.33379 -25.74427 -22.86701 -21.85262 -21.24673 -20.31178 -16.90918 -15.92851 -15.77621 -15.10296 -14.66071 -14.04624 -13.07951 -12.70963 -12.32305 -11.90745 -11.47605 -11.41411 -11.31012 -11.27944 -11.20551 -10.93325 -10.79730 -10.67784 -10.32201 -10.14211 -9.74820 -9.46605 -9.22430 -9.11877 -8.90930 -8.35254 -6.71553 -5.55763 -2.95972 3.42855 3.51092 3.52047 4.58077 5.16561 5.23458 5.30473 5.50965 5.70810 5.85324 5.91358 6.03913 6.05881 6.08735 6.11201 6.23700 6.31481 6.35333 6.48244 6.51542 6.66614 6.74608 6.83205 6.83694 7.05632 7.14384 7.20745 7.30564 7.51444 7.59017 7.92739 7.97104 8.48924 9.35246 10.02545 10.46589 11.42494 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039088 B = 0.012867 C = 0.011241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.157371 B = 2175.654092 C = 2490.353985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.154 3.846 2 N -0.602 5.602 3 C -0.239 4.239 4 H 0.092 0.908 5 C -0.011 4.011 6 N -0.909 5.909 7 Si 0.891 3.109 8 H -0.279 1.279 9 H -0.294 1.294 10 H -0.292 1.292 11 C 0.185 3.815 12 H 0.047 0.953 13 C -0.125 4.125 14 C -0.082 4.082 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.092 4.092 18 C -0.128 4.128 19 C -0.107 4.107 20 H -0.003 1.003 21 H 0.017 0.983 22 H 0.061 0.939 23 H 0.248 0.752 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.417 -7.986 0.830 10.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.324 5.324 3 C -0.367 4.367 4 H 0.109 0.891 5 C -0.207 4.207 6 N -0.556 5.556 7 Si 0.722 3.278 8 H -0.204 1.204 9 H -0.221 1.221 10 H -0.219 1.219 11 C 0.077 3.923 12 H 0.066 0.934 13 C -0.164 4.164 14 C -0.101 4.101 15 C -0.146 4.146 16 C -0.151 4.151 17 C -0.112 4.112 18 C -0.165 4.165 19 C -0.145 4.145 20 H 0.016 0.984 21 H 0.036 0.964 22 H 0.080 0.920 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.279 -7.841 0.809 10.078 hybrid contribution 0.370 0.903 0.235 1.003 sum 6.648 -6.938 1.044 9.666 Atomic orbital electron populations 1.21077 0.82542 0.93648 1.01792 1.44197 1.01747 1.00631 1.85833 1.19515 0.93166 0.83384 1.40682 0.89073 1.24783 0.96974 0.97533 1.01454 1.70126 1.14350 1.24882 1.46275 0.86350 0.78495 0.84758 0.78166 1.20446 1.22100 1.21876 1.20275 0.91801 0.88245 0.91973 0.93427 1.22097 0.94072 1.01513 0.98692 1.21005 0.97387 0.94781 0.96923 1.21505 0.98542 0.97250 0.97315 1.21561 0.97775 0.98218 0.97514 1.21478 0.96856 0.93167 0.99745 1.21939 0.96529 1.02741 0.95305 1.21513 0.97649 0.98007 0.97293 0.98447 0.96440 0.92041 0.94170 0.93827 0.90442 0.92769 0.93091 0.92931 0.93022 0.93131 0.92297 0.94859 0.86803 0.91901 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.86 9.08 59.85 0.54 4.40 16 2 N -0.60 -14.87 2.83 -173.46 -0.49 -15.36 16 3 C -0.24 -6.26 5.96 -15.06 -0.09 -6.35 16 4 H 0.09 2.30 3.57 -52.49 -0.19 2.12 16 5 C -0.01 -0.30 5.20 -17.43 -0.09 -0.39 16 6 N -0.91 -26.42 10.23 55.49 0.57 -25.85 16 7 Si 0.89 21.89 29.60 -169.99 -5.03 16.86 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 C 0.19 3.82 2.82 -67.91 -0.19 3.63 16 12 H 0.05 0.95 7.56 -51.93 -0.39 0.56 16 13 C -0.12 -2.34 5.11 -26.73 -0.14 -2.47 16 14 C -0.08 -1.37 3.20 -90.59 -0.29 -1.66 16 15 C -0.11 -1.61 5.71 -26.73 -0.15 -1.76 16 16 C -0.11 -1.77 5.71 -26.73 -0.15 -1.92 16 17 C -0.09 -1.76 2.91 -90.60 -0.26 -2.03 16 18 C -0.13 -2.53 5.11 -26.73 -0.14 -2.67 16 19 C -0.11 -1.92 5.19 -26.71 -0.14 -2.06 16 20 H 0.00 -0.07 7.56 -51.93 -0.39 -0.46 16 21 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 22 H 0.06 1.69 6.47 -51.93 -0.34 1.36 16 23 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.64 6.87 -51.93 -0.36 1.28 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.11 2.68 4.75 -51.92 -0.25 2.43 16 34 H 0.06 1.22 6.49 -51.93 -0.34 0.88 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 252.70 15.07 3.81 3.81 Total: -1.00 -27.90 252.70 -7.84 -35.75 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.60 Total: -1.92 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.10 Total: -13.28 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.08 Total: -41.21 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.90 -7.84 -35.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307566172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.487 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds