Wall clock time and date at job start Mon Mar 30 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36940 * 119.99365 * 2 1 4 4 H 1.07997 * 119.99673 * 170.76516 * 3 2 1 5 5 C 1.38810 * 120.00161 * 350.77117 * 3 2 1 6 6 N 1.31620 * 120.00078 * 340.64160 * 5 3 2 7 7 Si 1.86801 * 120.00003 * 160.64425 * 5 3 2 8 8 H 1.48497 * 109.46990 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47083 * 119.99849 * 7 5 3 10 10 H 1.48494 * 109.47087 * 239.99840 * 7 5 3 11 11 C 1.46494 * 120.00266 * 180.02562 * 2 1 3 12 12 H 1.09002 * 109.47194 * 353.75602 * 11 2 1 13 13 C 1.52998 * 109.47118 * 233.75384 * 11 2 1 14 14 C 1.53007 * 109.47068 * 239.99992 * 13 11 2 15 15 C 1.52996 * 109.47411 * 300.00242 * 14 13 11 16 16 C 1.53005 * 109.47028 * 59.99624 * 15 14 13 17 17 C 1.52995 * 109.47162 * 0.02562 * 16 15 14 18 18 C 1.52998 * 109.47289 * 59.99769 * 17 16 15 19 19 C 1.52998 * 109.47118 * 299.99936 * 18 17 16 20 20 H 1.09004 * 109.46320 * 185.72635 * 1 2 3 21 21 H 1.08997 * 109.47538 * 305.72198 * 1 2 3 22 22 H 1.08994 * 109.47232 * 65.73324 * 1 2 3 23 23 H 0.97002 * 119.99933 * 180.02562 * 6 5 3 24 24 H 1.08996 * 109.46958 * 120.00555 * 13 11 2 25 25 H 1.09001 * 109.47402 * 359.97438 * 13 11 2 26 26 H 1.08997 * 109.47048 * 179.97438 * 14 13 11 27 27 H 1.08995 * 109.47106 * 180.02562 * 15 14 13 28 28 H 1.09002 * 109.46539 * 300.00260 * 15 14 13 29 29 H 1.08997 * 109.47050 * 239.99794 * 16 15 14 30 30 H 1.09003 * 109.46783 * 120.00465 * 16 15 14 31 31 H 1.09004 * 109.47131 * 180.02562 * 17 16 15 32 32 H 1.08994 * 109.47360 * 60.00346 * 18 17 16 33 33 H 1.09007 * 109.46821 * 180.02562 * 18 17 16 34 34 H 1.09003 * 109.47270 * 240.00536 * 19 18 17 35 35 H 1.08995 * 109.47350 * 120.00093 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.2191 1.1921 0.1501 5 6 1.4690 2.3803 -0.1928 6 7 0.2735 2.3750 -0.7434 7 14 2.2497 3.9951 0.3291 8 1 3.5869 3.7307 0.9183 9 1 2.3960 4.8796 -0.8548 10 1 1.3866 4.6585 1.3391 11 6 2.1976 -1.2686 -0.0006 12 1 1.4946 -2.0942 0.1108 13 6 3.1912 -1.2843 1.1628 14 6 4.6119 -1.4454 0.6179 15 6 4.7146 -2.7598 -0.1583 16 6 3.7209 -2.7441 -1.3216 17 6 2.9562 -1.4189 -1.3213 18 6 3.9433 -0.2604 -1.4780 19 6 4.9369 -0.2762 -0.3147 20 1 -0.3632 -1.0226 0.1025 21 1 -0.3634 0.6000 0.8343 22 1 -0.3633 0.4223 -0.9368 23 1 -0.2020 3.2096 -0.8784 24 1 2.9602 -2.1174 1.8266 25 1 3.1184 -0.3477 1.7155 26 1 5.3198 -1.4561 1.4467 27 1 5.7268 -2.8746 -0.5460 28 1 4.4834 -3.5927 0.5057 29 1 3.0180 -3.5696 -1.2102 30 1 4.2611 -2.8513 -2.2623 31 1 2.2480 -1.4079 -2.1498 32 1 4.4834 -0.3679 -2.4186 33 1 3.3984 0.6837 -1.4773 34 1 4.8639 0.6605 0.2382 35 1 5.9489 -0.3912 -0.7027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307566172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:50 Heat of formation + Delta-G solvation = 1.623895 kcal Electronic energy + Delta-G solvation = -15162.625128 eV Core-core repulsion = 12967.120009 eV Total energy + Delta-G solvation = -2195.505119 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.36633 -36.72282 -33.23139 -32.00840 -31.70518 -30.04122 -27.78750 -24.67086 -23.21880 -22.73260 -22.02311 -18.82226 -17.59645 -17.19459 -16.70543 -16.16522 -15.90383 -14.99169 -14.38176 -14.11834 -13.52489 -13.09872 -12.84271 -12.78712 -12.76112 -12.70285 -12.66780 -12.58140 -12.52114 -12.15396 -11.95745 -11.36760 -11.27369 -10.82621 -10.61821 -10.43016 -10.30991 -8.74096 -7.64856 -5.05802 1.44477 1.47593 1.55625 2.56949 3.37788 3.63355 3.87266 3.97468 4.13037 4.49074 4.58031 4.63160 4.65453 4.69769 4.73013 4.75306 4.82123 4.87331 4.92740 5.06869 5.21533 5.27907 5.34354 5.38759 5.48599 5.61998 5.65394 5.71650 5.81009 5.84001 5.88864 5.95619 6.43706 7.26475 8.02579 8.41377 9.32946 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039088 B = 0.012867 C = 0.011241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.157371 B = 2175.654092 C = 2490.353985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.615 5.615 3 C -0.219 4.219 4 H 0.101 0.899 5 C -0.075 4.075 6 N -0.945 5.945 7 Si 0.946 3.054 8 H -0.265 1.265 9 H -0.299 1.299 10 H -0.300 1.300 11 C 0.175 3.825 12 H 0.055 0.945 13 C -0.119 4.119 14 C -0.080 4.080 15 C -0.103 4.103 16 C -0.106 4.106 17 C -0.090 4.090 18 C -0.127 4.127 19 C -0.105 4.105 20 H 0.027 0.973 21 H -0.008 1.008 22 H 0.032 0.968 23 H 0.239 0.761 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 -10.105 1.407 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.338 5.338 3 C -0.349 4.349 4 H 0.119 0.881 5 C -0.267 4.267 6 N -0.596 5.596 7 Si 0.777 3.223 8 H -0.189 1.189 9 H -0.227 1.227 10 H -0.227 1.227 11 C 0.068 3.932 12 H 0.073 0.927 13 C -0.158 4.158 14 C -0.099 4.099 15 C -0.140 4.140 16 C -0.144 4.144 17 C -0.111 4.111 18 C -0.165 4.165 19 C -0.143 4.143 20 H 0.045 0.955 21 H 0.011 0.989 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.665 -9.993 1.398 13.300 hybrid contribution -0.344 1.477 0.029 1.517 sum 8.321 -8.516 1.427 11.991 Atomic orbital electron populations 1.20793 0.83249 0.94581 0.99254 1.44494 1.01787 1.01937 1.85551 1.19862 0.93598 0.83921 1.37481 0.88134 1.25451 0.97873 1.00360 1.03052 1.70302 1.15839 1.24703 1.48769 0.85459 0.78156 0.81492 0.77211 1.18916 1.22738 1.22724 1.20594 0.92429 0.86451 0.93709 0.92653 1.21995 0.95186 1.00919 0.97735 1.21023 0.96060 0.95282 0.97504 1.21494 0.99306 0.96455 0.96772 1.21508 0.98054 0.95868 0.98987 1.21380 0.96572 0.95401 0.97728 1.21806 0.96909 1.00650 0.97111 1.21491 0.98379 0.97845 0.96566 0.95471 0.98928 0.94969 0.95140 0.91603 0.93374 0.90602 0.90988 0.90935 0.91747 0.91820 0.94807 0.93538 0.91277 0.94005 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.54 9.08 127.77 1.16 9.70 16 2 N -0.62 -30.67 2.83 -702.69 -1.99 -32.66 16 3 C -0.22 -11.67 5.96 84.03 0.50 -11.16 16 4 H 0.10 5.11 3.57 -2.91 -0.01 5.10 16 5 C -0.07 -4.26 5.20 84.86 0.44 -3.82 16 6 N -0.95 -57.34 10.23 21.65 0.22 -57.12 16 7 Si 0.95 46.23 29.60 68.60 2.03 48.26 16 8 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 9 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 10 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 11 C 0.17 6.95 2.82 45.01 0.13 7.08 16 12 H 0.06 2.10 7.56 -2.39 -0.02 2.08 16 13 C -0.12 -4.17 5.11 30.60 0.16 -4.01 16 14 C -0.08 -2.34 3.20 -10.78 -0.03 -2.37 16 15 C -0.10 -2.48 5.71 30.59 0.17 -2.31 16 16 C -0.11 -2.91 5.71 30.59 0.17 -2.73 16 17 C -0.09 -3.32 2.91 -10.78 -0.03 -3.35 16 18 C -0.13 -4.87 5.11 30.59 0.16 -4.71 16 19 C -0.11 -3.49 5.19 30.61 0.16 -3.33 16 20 H 0.03 1.19 7.56 -2.38 -0.02 1.17 16 21 H -0.01 -0.44 7.86 -2.39 -0.02 -0.46 16 22 H 0.03 1.84 6.47 -2.39 -0.02 1.83 16 23 H 0.24 14.26 8.31 -92.71 -0.77 13.49 16 24 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.05 1.97 6.87 -2.39 -0.02 1.95 16 26 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 3.28 4.75 -2.38 -0.01 3.27 16 34 H 0.04 1.55 6.49 -2.39 -0.02 1.53 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -61.57 252.70 4.30 -57.27 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.05 Total: 5.27 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 2.99 Total: -21.02 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -1.77 Total: -89.78 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -61.57 4.30 -57.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307566172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.893 kcal (2) G-P(sol) polarization free energy of solvation -61.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds